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Jianfeng Lu

Publications and source records attributed to Jianfeng Lu.

At least 271 records · Page 15Linked to original sources

Path integral molecular dynamics with surface hopping for thermal equilibrium sampling of nonadiabatic systems

In this work, a novel ring polymer representation for multi-level quantum system is proposed for thermal average calculations. The proposed presentation keeps the discreteness of the electronic states: besides position and momentum, each bead in the ring polymer is also characterized by a surface index indicating the electronic energy surface. A path integral molecular dynamics with surface hopping (PIMD-SH) dynamics is also developed to sample the equilibrium distribution of ring polymer configurational space. The PIMD-SH sampling method is validated theoretically and by numerical examples.

physics.chem-ph↗

Point cloud discretization of Fokker-Planck operators for committor functions

The committor functions provide useful information to the understanding of transitions of a stochastic system between disjoint regions in phase space. In this work, we develop a point cloud discretization for Fokker-Planck operators to numerically calculate the committor function, with the assumption that the transition occurs on an intrinsically low-dimensional manifold in the ambient potentially high dimensional configurational space of the stochastic system. Numerical examples on model systems validate the effectiveness of the proposed method.

math.NA↗

Frozen Gaussian approximation with surface hopping for mixed quantum-classical dynamics: A mathematical justification of fewest switches surface hopping algorithms

We develop a surface hopping algorithm based on frozen Gaussian approximation for semiclassical matrix Schrödinger equations, in the spirit of Tully's fewest switches surface hopping method. The algorithm is asymptotically derived from the Schrödinger equation with rigorous approximation error analysis. The resulting algorithm can be viewed as a path integral stochastic representation of the semiclassical matrix Schrödinger equations. Our results provide mathematical understanding to and shed new light on the important class of surface hopping methods in theoretical and computational chemistry.

math.NA↗

Moderate Deviation for Random Elliptic PDEs with Small Noise

Partial differential equations with random inputs have become popular models to characterize physical systems with uncertainty coming from, e.g., imprecise measurement and intrinsic randomness. In this paper, we perform asymptotic rare event analysis for such elliptic PDEs with random inputs. In particular, we consider the asymptotic regime that the noise level converges to zero suggesting that the system uncertainty is low, but does exists. We develop sharp approximations of the probability of a large class of rare events.

math.PR↗

A Surface Hopping Gaussian Beam Method for High-Dimensional Transport Systems

We propose a surface hopping Gaussian beam method to numerically solve a class of high frequency linear transport systems in high spatial dimensions, based on asymptotic analysis. The stochastic surface hopping is combined with Gaussian beam method to deal with the multiple characteristic directions of the transport system in high dimensions. The Monte Carlo nature of the proposed algorithm makes it easy for parallel implementations. We validate the performance of the algorithms for applications on the quantum-classical Liouville equations.

math.NA↗

A Mathematical Theory of Optimal Milestoning (with a Detour via Exact Milestoning)

Milestoning is a computational procedure that reduces the dynamics of complex systems to memoryless jumps between intermediates, or milestones, and only retains some information about the probability of these jumps and the time lags between them. Here we analyze a variant of this procedure, termed optimal milestoning, which relies on a specific choice of milestones to capture exactly some kinetic features of the original dynamical system. In particular, we prove that optimal milestoning permits the exact calculation of the mean first passage times (MFPT) between any two milestones. In so doing, we also analyze another variant of the method, called exact milestoning, which also permits the exact calculation of certain MFPTs, but at the price of retaining more information about the original system's dynamics. Finally, we discuss importance sampling strategies based on optimal and exact milestoning that can be used to bypass the simulation of the original system when estimating the statistical quantities used in these methods.

math-ph↗

Multi-Label Image Classification with Regional Latent Semantic Dependencies

Deep convolution neural networks (CNN) have demonstrated advanced performance on single-label image classification, and various progress also have been made to apply CNN methods on multi-label image classification, which requires to annotate objects, attributes, scene categories etc. in a single shot. Recent state-of-the-art approaches to multi-label image classification exploit the label dependencies in an image, at global level, largely improving the labeling capacity. However, predicting small objects and visual concepts is still challenging due to the limited discrimination of the global visual features. In this paper, we propose a Regional Latent Semantic Dependencies model (RLSD) to address this problem. The utilized model includes a fully convolutional localization architecture to localize the regions that may contain multiple highly-dependent labels. The localized regions are further sent to the recurrent neural networks (RNN) to characterize the latent semantic dependencies at the regional level. Experimental results on several benchmark datasets show that our proposed model achieves the best performance compared to the state-of-the-art models, especially for predicting small objects occurred in the images. In addition, we set up an upper bound model (RLSD+ft-RPN) using bounding box coordinates during training, the experimental results also show that our RLSD can approach the upper bound without using the bounding-box annotations, which is more realistic in the real world.

cs.CV↗

Quasinonlocal coupling of nonlocal diffusions

We developed a new self-adjoint, consistent, and stable coupling strategy for nonlocal diffusion models, inspired by the quasinonlocal atomistic-to-continuum method for crystalline solids. The proposed coupling model is coercive with respect to the energy norms induced by the nonlocal diffusion kernels as well as the $L^2$ norm, and it satisfies the maximum principle. A finite difference approximation is used to discretize the coupled system, which inherits the property from the continuous formulation. Furthermore, we design a numerical example which shows the discrepancy between the fully nonlocal and fully local diffusions, whereas the result of the coupled diffusion agrees with that of the fully nonlocal diffusion.

math.NA↗

Weak solution of a continuum model for vicinal surface in the attachment-detachment-limited regime

We study in this work a continuum model derived from 1D attachment-detachment-limited (ADL) type step flow on vicinal surface, $ u_t=-u^2(u^3)_{hhhh}$, where $u$, considered as a function of step height $h$, is the step slope of the surface. We formulate a notion of weak solution to this continuum model and prove the existence of a global weak solution, which is positive almost everywhere. We also study the long time behavior of weak solution and prove it converges to a constant solution as time goes to infinity. The space-time Hölder continuity of the weak solution is also discussed as a byproduct.

math.AP↗

Wavepackets in inhomogeneous periodic media: effective particle-field dynamics and Berry curvature

We consider a model of an electron in a crystal moving under the influence of an external electric field: Schrödinger's equation with a potential which is the sum of a periodic function and a general smooth function. We identify two dimensionless parameters: (re-scaled) Planck's constant and the ratio of the lattice spacing to the scale of variation of the external potential. We consider the special case where both parameters are equal and denote this parameter $ε$. In the limit $ε\downarrow 0$, we prove the existence of solutions known as semiclassical wavepackets which are asymptotic up to `Ehrenfest time' $t \sim \ln 1/ε$. To leading order, the center of mass and average quasi-momentum of these solutions evolve along trajectories generated by the classical Hamiltonian given by the sum of the Bloch band energy and the external potential. We then derive all corrections to the evolution of these observables proportional to $ε$. The corrections depend on the gauge-invariant Berry curvature of the Bloch band, and a coupling to the evolution of the wave-packet envelope which satisfies Schrödinger's equation with a time-dependent harmonic oscillator Hamiltonian. This infinite dimensional coupled `particle-field' system may be derived from an `extended' $ε$-dependent Hamiltonian. It is known that such coupling of observables (discrete particle-like degrees of freedom) to the wave-envelope (continuum field-like degrees of freedom) can have a significant impact on the overall dynamics.

math-ph↗

Validity and regularization of classical half-space equations

Recent result [Wu and Guo, Comm. Math. Phys., 2015] has shown that over the 2D unit disk, the classical half-space equation (CHS) for the neutron transport does not capture the correct boundary layer behaviour as long believed. In this paper we develop a regularization technique for CHS to any arbitrary order and use its first-order regularization to show that in the case of the 2D unit disk, although CHS misrepresents the boundary layer behaviour, it does give the correct boundary condition for the interior macroscopic (Laplace) equation. Therefore CHS is still a valid equation to recover the correct boundary condition for the interior Laplace equation over the 2D unit disk.

math.AP↗

A convergent method for linear half-space kinetic equations

We give a unified proof for the well-posedness of a class of linear half-space equations with general incoming data and construct a Galerkin method to numerically resolve this type of equations in a systematic way. Our main strategy in both analysis and numerics includes three steps: adding damping terms to the original half-space equation, using an inf-sup argument and even-odd decomposition to establish the well-posedness of the damped equation, and then recovering solutions to the original half-space equation. The proposed numerical methods for the damped equation is shown to be quasi-optimal and the numerical error of approximations to the original equation is controlled by that of the damped equation. This efficient solution to the half-space problem is useful for kinetic-fluid coupling simulations.

math.AP↗

Preconditioning orbital minimization method for planewave discretization

We present an efficient preconditioner for the orbital minimization method when the Hamiltonian is discretized using planewaves (i.e., pseudospectral method). This novel preconditioner is based on an approximate Fermi operator projection by pole expansion, combined with the sparsifying preconditioner to efficiently evaluate the pole expansion for a wide range of Hamiltonian operators. Numerical results validate the performance of the new preconditioner for the orbital minimization method, in particular, the iteration number is reduced to $O(1)$ and often only a few iterations are enough for convergence.

math.NA↗

Dislocation climb models from atomistic scheme to dislocation dynamics

We develop a mesoscopic dislocation dynamics model for vacancy-assisted dislocation climb by upscalings from a stochastic model on the atomistic scale. Our models incorporate microscopic mechanisms of (i) bulk diffusion of vacancies, (ii) vacancy exchange dynamics between bulk and dislocation core, (iii) vacancy pipe diffusion along the dislocation core, and (iv) vacancy attachment-detachment kinetics at jogs leading to the motion of jogs. Our mesoscopic model consists of the vacancy bulk diffusion equation and a dislocation climb velocity formula. The effects of pipe diffusion and the jog structure on dislocations are incorporated by a Robin boundary condition near the dislocations for the bulk diffusion equation and a new contribution in the dislocation climb velocity due to vacancy pipe diffusion driven by the stress variation along the dislocation. Our climb formulation is able to quantitatively describe the translation of prismatic loops at low temperatures when the bulk diffusion is negligible. Using this new formulation, we derive analytical formulas for the climb velocity of a straight edge dislocation and a prismatic circular loop. Our dislocation climb formulation can be implemented in dislocation dynamics simulations to incorporate all the above four microscopic mechanisms of dislocation climb.

cond-mat.mtrl-sci↗

A cubic scaling algorithm for excited states calculations in particle-particle random phase approximation

The particle-particle random phase approximation (pp-RPA) has been shown to be capable of describing double, Rydberg, and charge transfer excitations, for which the conventional time-dependent density functional theory (TDDFT) might not be suitable. It is thus desirable to reduce the computational cost of pp-RPA so that it can be efficiently applied to larger molecules and even solids. This paper introduces an $O(N^3)$ algorithm, where $N$ is the number of orbitals, based on an interpolative separable density fitting technique and the Jacobi-Davidson eigensolver to calculate a few low-lying excitations in the pp-RPA framework. The size of the pp-RPA matrix can also be reduced by keeping only a small portion of orbitals with orbital energy close to the Fermi energy. This reduced system leads to a smaller prefactor of the cubic scaling algorithm, while keeping the accuracy for the low-lying excitation energies.

physics.comp-ph↗

PEXSI-$Σ$: A Green's function embedding method for Kohn-Sham density functional theory

In this paper, we propose a new Green's function embedding method called PEXSI-$Σ$ for describing complex systems within the Kohn-Sham density functional theory (KSDFT) framework, after revisiting the physics literature of Green's function embedding methods from a numerical linear algebra perspective. The PEXSI-$Σ$ method approximates the density matrix using a set of nearly optimally chosen Green's functions evaluated at complex frequencies. For each Green's function, the complex boundary conditions are described by a self energy matrix $Σ$ constructed from a physical reference Green's function, which can be computed relatively easily. In the linear regime, such treatment of the boundary condition can be numerically exact. The support of the $Σ$ matrix is restricted to degrees of freedom near the boundary of computational domain, and can be interpreted as a frequency dependent surface potential. This makes it possible to perform KSDFT calculations with $\mathcal{O}(N^2)$ computational complexity, where $N$ is the number of atoms within the computational domain. Green's function embedding methods are also naturally compatible with atomistic Green's function methods for relaxing the atomic configuration outside the computational domain. As a proof of concept, we demonstrate the accuracy of the PEXSI-$Σ$ method for graphene with divacancy and dislocation dipole type of defects using the DFTB+ software package.

physics.comp-ph↗

Improved sampling and validation of frozen Gaussian approximation with surface hopping algorithm for nonadiabatic dynamics

In the spirit of the fewest switches surface hopping, the frozen Gaussian approximation with surface hopping (FGA-SH) method samples a path integral representation of the non-adiabatic dynamics in the semiclassical regime. An improved sampling scheme is developed in this work for FGA-SH based on birth and death branching processes. The algorithm is validated for the standard test examples of non-adiabatic dynamics.

physics.chem-ph↗

Thermalization of oscillator chains with onsite anharmonicity and comparison with kinetic theory

We perform microscopic molecular dynamics simulations of particle chains with an onsite anharmonicity to study relaxation of spatially homogeneous states to equilibrium, and directly compare the simulations with the corresponding Boltzmann-Peierls kinetic theory. The Wigner function serves as common interface between the microscopic and kinetic level. We demonstrate quantitative agreement after an initial transient time interval. In particular, besides energy conservation, we observe the additional quasi-conservation of the phonon density, defined via an ensemble average of the related microscopic field variables and exactly conserved by the kinetic equations. On super-kinetic time scales, density quasi-conservation is lost while energy remains conserved, and we find evidence for eventual relaxation of the density to its canonical ensemble value. However, the precise mechanism remains unknown and is not captured by the Boltzmann-Peierls equations.

cond-mat.stat-mech↗