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Jie Chen

Publications and source records attributed to Jie Chen.

At least 739 records · Page 41Linked to original sources

Stochastic approximation of score functions for Gaussian processes

We discuss the statistical properties of a recently introduced unbiased stochastic approximation to the score equations for maximum likelihood calculation for Gaussian processes. Under certain conditions, including bounded condition number of the covariance matrix, the approach achieves $O(n)$ storage and nearly $O(n)$ computational effort per optimization step, where $n$ is the number of data sites. Here, we prove that if the condition number of the covariance matrix is bounded, then the approximate score equations are nearly optimal in a well-defined sense. Therefore, not only is the approximation efficient to compute, but it also has comparable statistical properties to the exact maximum likelihood estimates. We discuss a modification of the stochastic approximation in which design elements of the stochastic terms mimic patterns from a $2^n$ factorial design. We prove these designs are always at least as good as the unstructured design, and we demonstrate through simulation that they can produce a substantial improvement over random designs. Our findings are validated by numerical experiments on simulated data sets of up to 1 million observations. We apply the approach to fit a space-time model to over 80,000 observations of total column ozone contained in the latitude band $40^{\circ}$-$50^{\circ}$N during April 2012.

stat.AP↗

Metabolizable Bi2Se3 Nanoplates: Biodistribution, Toxicity, and Uses for Cancer Radiation Therapy and Imaging

Bi, a high atom number element, has a high photoelectric absorption coefficient, and Se element has anticancer activity. Hence, their compound chalcogenide (Bi2Se3) deserves a thorough investigation for biomedical applications. This study reveals that Bi2Se3 nanoplates (54 nm wide) protected with poly(vinylpyrollidone) (PVP) are biocompatible and have low toxicity even at a high dose of 20 mg/kg in mice. This conclusion was made through the studies on the biodistribution and 90-day long term in vivo clearance of the nanoplates. Liver and spleen were dominant organs for the nanoplates accumulation which was mainly due to RES absorption, but 93 % the nanoplates were cleared after 90 days treatment. Concentrations of Bi and Se in tumor tissue continuously increased until 72 h after intraperitoneal injection into mice. Such selective accumulation of Bi was utilized to enhance the contrast of X-ray CT images. The Bi elements concentrated in a tumor led to damage on the tumor cells when exposed to gamma radiation. Growth of the tumor significantly delayed and stopped after 16 days after the tumor was treated with the Bi2Se3 nanoplates and radiation. This work clearly shows that the Bi2Se3 nanoplates may be used for cancer radiation therapy and CT imaging. They deserve further studies for biological and medical applications.

physics.bio-ph↗

Multitask Diffusion Adaptation over Networks

Adaptive networks are suitable for decentralized inference tasks, e.g., to monitor complex natural phenomena. Recent research works have intensively studied distributed optimization problems in the case where the nodes have to estimate a single optimum parameter vector collaboratively. However, there are many important applications that are multitask-oriented in the sense that there are multiple optimum parameter vectors to be inferred simultaneously, in a collaborative manner, over the area covered by the network. In this paper, we employ diffusion strategies to develop distributed algorithms that address multitask problems by minimizing an appropriate mean-square error criterion with $\ell_2$-regularization. The stability and convergence of the algorithm in the mean and in the mean-square sense is analyzed. Simulations are conducted to verify the theoretical findings, and to illustrate how the distributed strategy can be used in several useful applications related to spectral sensing, target localization, and hyperspectral data unmixing.

cs.MA↗

Nonlinear unmixing of hyperspectral images using a semiparametric model and spatial regularization

Incorporating spatial information into hyperspectral unmixing procedures has been shown to have positive effects, due to the inherent spatial-spectral duality in hyperspectral scenes. Current research works that consider spatial information are mainly focused on the linear mixing model. In this paper, we investigate a variational approach to incorporating spatial correlation into a nonlinear unmixing procedure. A nonlinear algorithm operating in reproducing kernel Hilbert spaces, associated with an $\ell_1$ local variation norm as the spatial regularizer, is derived. Experimental results, with both synthetic and real data, illustrate the effectiveness of the proposed scheme.

stat.ML↗

Diffusion LMS for clustered multitask networks

Recent research works on distributed adaptive networks have intensively studied the case where the nodes estimate a common parameter vector collaboratively. However, there are many applications that are multitask-oriented in the sense that there are multiple parameter vectors that need to be inferred simultaneously. In this paper, we employ diffusion strategies to develop distributed algorithms that address clustered multitask problems by minimizing an appropriate mean-square error criterion with $\ell_2$-regularization. Some results on the mean-square stability and convergence of the algorithm are also provided. Simulations are conducted to illustrate the theoretical findings.

eess.SY↗

Convergence analysis of kernel LMS algorithm with pre-tuned dictionary

The kernel least-mean-square (KLMS) algorithm is an appealing tool for online identification of nonlinear systems due to its simplicity and robustness. In addition to choosing a reproducing kernel and setting filter parameters, designing a KLMS adaptive filter requires to select a so-called dictionary in order to get a finite-order model. This dictionary has a significant impact on performance, and requires careful consideration. Theoretical analysis of KLMS as a function of dictionary setting has rarely, if ever, been addressed in the literature. In an analysis previously published by the authors, the dictionary elements were assumed to be governed by the same probability density function of the input data. In this paper, we modify this study by considering the dictionary as part of the filter parameters to be set. This theoretical analysis paves the way for future investigations on KLMS dictionary design.

stat.ML↗

Enhanced Tumor Accumulation of Sub-2 nm Gold Nanoclusters for Cancer Radiation Therapy

A new type of metabolizable and efficient radiosensitizer for cancer radiotherapy is presented in this study by combining ultrasmall Au nanoclusters (NCs, <2 nm) with biocompatible coating ligands (glutathione, GSH). The new nano-construct (GSH-coated Au25 NCs) inherits attractive features of both the Au core (strong radiosensitizing effect) and GSH shell (good biocompatibility). It can preferentially accumulate in tumor via the improved EPR effect, which leads to strong enhancement for cancer radiotherapy. After the treatment, the small-sized GSH-Au25 NCs can be efficiently cleared by the kidney, minimizing any potential side effects due to the accumulation of Au25 NCs in the body.

physics.bio-ph↗

Online dictionary learning for kernel LMS. Analysis and forward-backward splitting algorithm

Adaptive filtering algorithms operating in reproducing kernel Hilbert spaces have demonstrated superiority over their linear counterpart for nonlinear system identification. Unfortunately, an undesirable characteristic of these methods is that the order of the filters grows linearly with the number of input data. This dramatically increases the computational burden and memory requirement. A variety of strategies based on dictionary learning have been proposed to overcome this severe drawback. Few, if any, of these works analyze the problem of updating the dictionary in a time-varying environment. In this paper, we present an analytical study of the convergence behavior of the Gaussian least-mean-square algorithm in the case where the statistics of the dictionary elements only partially match the statistics of the input data. This allows us to emphasize the need for updating the dictionary in an online way, by discarding the obsolete elements and adding appropriate ones. We introduce a kernel least-mean-square algorithm with L1-norm regularization to automatically perform this task. The stability in the mean of this method is analyzed, and its performance is tested with experiments.

stat.ML↗

Gaussian Process-Based Decentralized Data Fusion and Active Sensing for Mobility-on-Demand System

Mobility-on-demand (MoD) systems have recently emerged as a promising paradigm of one-way vehicle sharing for sustainable personal urban mobility in densely populated cities. In this paper, we enhance the capability of a MoD system by deploying robotic shared vehicles that can autonomously cruise the streets to be hailed by users. A key challenge to managing the MoD system effectively is that of real-time, fine-grained mobility demand sensing and prediction. This paper presents a novel decentralized data fusion and active sensing algorithm for real-time, fine-grained mobility demand sensing and prediction with a fleet of autonomous robotic vehicles in a MoD system. Our Gaussian process (GP)-based decentralized data fusion algorithm can achieve a fine balance between predictive power and time efficiency. We theoretically guarantee its predictive performance to be equivalent to that of a sophisticated centralized sparse approximation for the GP model: The computation of such a sparse approximate GP model can thus be distributed among the MoD vehicles, hence achieving efficient and scalable demand prediction. Though our decentralized active sensing strategy is devised to gather the most informative demand data for demand prediction, it can achieve a dual effect of fleet rebalancing to service the mobility demands. Empirical evaluation on real-world mobility demand data shows that our proposed algorithm can achieve a better balance between predictive accuracy and time efficiency than state-of-the-art algorithms.

cs.RO↗

Parallel Gaussian Process Regression with Low-Rank Covariance Matrix Approximations

Gaussian processes (GP) are Bayesian non-parametric models that are widely used for probabilistic regression. Unfortunately, it cannot scale well with large data nor perform real-time predictions due to its cubic time cost in the data size. This paper presents two parallel GP regression methods that exploit low-rank covariance matrix approximations for distributing the computational load among parallel machines to achieve time efficiency and scalability. We theoretically guarantee the predictive performances of our proposed parallel GPs to be equivalent to that of some centralized approximate GP regression methods: The computation of their centralized counterparts can be distributed among parallel machines, hence achieving greater time efficiency and scalability. We analytically compare the properties of our parallel GPs such as time, space, and communication complexity. Empirical evaluation on two real-world datasets in a cluster of 20 computing nodes shows that our parallel GPs are significantly more time-efficient and scalable than their centralized counterparts and exact/full GP while achieving predictive performances comparable to full GP.

stat.ML↗

Estimation in Phase-Shift and Forward Wireless Sensor Networks

We consider a network of single-antenna sensors that observe an unknown deterministic parameter. Each sensor applies a phase shift to the observation and the sensors simultaneously transmit the result to a multi-antenna fusion center (FC). Based on its knowledge of the wireless channel to the sensors, the FC calculates values for the phase factors that minimize the variance of the parameter estimate, and feeds this information back to the sensors. The use of a phase-shift-only transmission scheme provides a simplified analog implementation at the sensor, and also leads to a simpler algorithm design and performance analysis. We propose two algorithms for this problem, a numerical solution based on a relaxed semidefinite programming problem, and a closed-form solution based on the analytic constant modulus algorithm. Both approaches are shown to provide performance close to the theoretical bound. We derive asymptotic performance analyses for cases involving large numbers of sensors or large numbers of FC antennas, and we also study the impact of phase errors at the sensor transmitters. Finally, we consider the sensor selection problem, in which only a subset of the sensors is chosen to send their observations to the FC.

cs.IT↗

Parameter Tracking via Optimal Distributed Beamforming in an Analog Sensor Network

We consider the problem of optimal distributed beamforming in a sensor network where the sensors observe a dynamic parameter in noise and coherently amplify and forward their observations to a fusion center (FC). The FC uses a Kalman filter to track the parameter using the observations from the sensors, and we show how to find the optimal gain and phase of the sensor transmissions under both global and individual power constraints in order to minimize the mean squared error (MSE) of the parameter estimate. For the case of a global power constraint, a closed-form solution can be obtained. A numerical optimization is required for individual power constraints, but the problem can be relaxed to a semidefinite programming problem (SDP), and we show how the optimal solution can be constructed from the solution to the SDP. Simulation results show that compared with equal power transmission, the use of optimized power control can significantly reduce the MSE.

cs.IT↗

Linearly Reconfigurable Kalman Filtering for a Vector Process

In this paper, we consider a dynamic linear system in state-space form where the observation equation depends linearly on a set of parameters. We address the problem of how to dynamically calculate these parameters in order to minimize the mean-squared error (MSE) of the state estimate achieved by a Kalman filter. We formulate and solve two kinds of problems under a quadratic constraint on the observation parameters: minimizing the sum MSE (Min-Sum-MSE) or minimizing the maximum MSE (Min-Max-MSE). In each case, the optimization problem is divided into two sub-problems for which optimal solutions can be found: a semidefinite programming (SDP) problem followed by a constrained least-squares minimization. A more direct solution is shown to exist for the special case of a scalar observation; in particular, the Min-Sum-MSE solution can be found directly using a generalized eigendecomposition, and is optimally solved utilizing Rayleigh quotient, and the Min-Max-MSE problem reduces to an SDP feasibility test that can be solved via the bisection method.

cs.IT↗

Inverse Problem of Electro-seismic Conversion

When a porous rock is saturated with an electrolyte, electrical fields are coupled with seismic waves via the electro-seismic conversion. Pride derived the governing models, in which Maxwell equations are coupled with Biot equations through the electro-kinetic mobility parameter. The inverse problem of the linearized electro-seismic conversion consists in two step, namely the inversion of Biot equations and the inversion of Maxwell equations. We analyze the reconstruction of conductivity and electro-kinetic mobility parameter in Maxwell equations with internal measurements, while the internal measurements are provided by the results of the inversion of Biot equations. We show that knowledge of two internal data based on well-chosen boundary conditions uniquely determine these two parameters. Moreover, a Lipschitz type stability is proved based on the same sets of well-chosen boundary conditions.

math.AP↗

Helices 2 and 3 are the initiation sites in the PrPc -> PrPsc transition

It is established that prion protein is the sole causative agent in a number of diseases in humans and animals. However, the nature of conformational changes that the normal cellular form PrPC undergoes in the conversion process to a self-replicating state is still not fully understood. The ordered C-terminus of PrPC proteins has three helices (H1, H2, and H3). Here, we use the Statistical Coupling Analysis (SCA) to infer co-variations at various locations using a family of evolutionarily related sequences, and the response of mouse and human PrPCs to mechanical force to decipher the initiation sites for transition from PrPC to an aggregation prone PrP* state. The sequence-based SCA predicts that the clustered residues in non-mammals are localized in the stable core (near H1) of PrPC whereas in mammalian PrPC they are localized in the frustrated helices H2 and H3 where most of the pathogenic mutations are found. Force-extension curves and free energy profiles as a function of extension of mouse and human PrPC in the absence of disulfide (SS) bond between residues Cys179 and Cys214, generated by applying mechanical force to the ends of the molecule, show a sequence of unfolding events starting first with rupture of H2 and H3. This is followed by disruption of structure in two strands. Helix H1, stabilized by three salt-bridges, resists substantial force before unfolding. Force extension profiles and the dynamics of rupture of tertiary contacts also show that even in the presence of SS bond the instabilities in most of H3 and parts of H2 still determine the propensity to form the PrP* state. In mouse PrPC with SS bond there are about ten residues that retain their order even at high forces.

q-bio.BM↗

Substrate Coupling Suppresses Size Dependence of Thermal Conductivity in Supported Graphene

Thermal conductivity $κ$ of both suspended and supported graphene has been studied by using molecular dynamics simulations. Obvious length dependence is observed in $κ$ of suspended single-layer graphene (SLG), while $κ$ of supported SLG is insensitive to the length. The simulation result of room temperature $κ$ of supported SLG is in good agreement with experimental value. In contrast to the decrease in $κ$ induced by inter-layer interaction in suspended few-layer graphene (FLG), $κ$ of supported FLG is found to increase rapidly with the layer thickness, reaching about 90% of that of bulk graphite at six layers, and eventually saturates at the thickness of 13.4 nm. More interestingly, unlike the remarkable substrate dependent $κ$ in SLG, the effect of substrate on thermal transport is much weaker in FLG. The underlying physics is investigated and presented.

cond-mat.mes-hall↗

Anonymous and Adaptively Secure Revocable IBE with Constant Size Public Parameters

In Identity-Based Encryption (IBE) systems, key revocation is non-trivial. This is because a user's identity is itself a public key. Moreover, the private key corresponding to the identity needs to be obtained from a trusted key authority through an authenticated and secrecy protected channel. So far, there exist only a very small number of revocable IBE (RIBE) schemes that support non-interactive key revocation, in the sense that the user is not required to interact with the key authority or some kind of trusted hardware to renew her private key without changing her public key (or identity). These schemes are either proven to be only selectively secure or have public parameters which grow linearly in a given security parameter. In this paper, we present two constructions of non-interactive RIBE that satisfy all the following three attractive properties: (i) proven to be adaptively secure under the Symmetric External Diffie-Hellman (SXDH) and the Decisional Linear (DLIN) assumptions; (ii) have constant-size public parameters; and (iii) preserve the anonymity of ciphertexts---a property that has not yet been achieved in all the current schemes.

cs.CR↗

Size-dependent radiosensitization of PEG-coated gold nanoparticles for cancer radiation therapy

Gold nanoparticles have been conceived as a radiosensitizer in cancer radiation therapy, but one of the important questions for primary drug screening is what size of gold nanoparticles can optimally enhance radiation effects. Herein, we perform in vitro and in vivo radiosensitization studies of 4.8, 12.1, 27.3, and 46.6 nm PEG-coated gold nanoparticles. In vitro results show that all sizes of the PEG-coated gold nanoparticles can cause a significant decrease in cancer cell survival after gamma radiation. 12.1 and 27.3 nm PEG-coated gold nanoparticles have dispersive distributions in the cells and have stronger sensitization effects than 4.8 and 46.6 nm particles by both cell apoptosis and necrosis. Further, in vivo results also show all sizes of the PEG-coated gold nanoparticles can decrease tumor volume and weight after 5 Gy radiations, and 12.1 and 27.3 nm PEG-coated gold nanoparticles have greater sensitization effects than 4.8 and 46.6 nm particles, which can lead to almost complete disappearance of the tumor. In vivo biodistribution confirms that 12.1 and 27.3 nm PEG-coated gold nanoparticles are accumulated in the tumor with high concentrations. The pathology, immune response, and blood biochemistry indicate that the PEG-coated gold nanoparticles do not cause spleen and kidney damages, but give rise to liver damage and gold accumulation. It can be concluded that 12.1 and 27.3 nm PEG-coated gold nanoparticles show high radiosensitivity, and these results have an important indication for possible radiotherapy and drug delivery.

physics.med-ph↗