arXiv subjects

Jun Zhao

Publications and source records attributed to Jun Zhao.

At least 19 recordsLinked to original sources

arXiv2026

SAEScientist-Bench: Can AI Agents Conduct Autonomous SAE Interpretability Research?

While research on recursive self-improvement (RSI) has predominantly automated model training pipelines, reliable autonomous development demands a missing pillar: post-hoc monitoring and auditing to understand what models learn and ensure safe alignment. Mechanistic interpretability tools are essential to bridge this gap, among which Sparse Autoencoders (SAEs) serve as a cornerstone by isolating interpretable features for model inspection and steering. In this paper, we introduce SAEScientist-Bench to evaluate whether AI agents can act as scientists utilizing SAE tools for autonomous mechanistic discovery. Given a target concept, an agent designs contrastive probes and navigates a Gemma Scope dictionary of 131K+ features in Gemma-2-9B-IT to discover the optimal feature, evaluated against curated expert reference features anchored on Neuronpedia across activation rank, concept selectivity on contrastive texts, and causal steering. Across 10 agent configurations and 20 tasks, frontier agents demonstrate genuine discovery capabilities and lead different evaluation dimensions, but remain well behind the expert baseline, approaching expert levels on separating target concepts from contrastive controls while lagging substantially in causal generation steering. Further analysis reveals that although agents can design contrasts to rule out spurious candidates, they frequently misinterpret experimental measurements. These results establish experimental model understanding as a measurable capability for closed-loop autonomous AI R&D. Our code is available at https://github.com/Trae1ounG/SAEScientist.

cs.AI↗

arXiv2026

FoundDiff: Foundational Diffusion Model for Generalizable Low-Dose CT Denoising

Low-dose computed tomography (CT) denoising is crucial for reduced radiation exposure while ensuring diagnostically acceptable image quality. Despite significant advancements driven by deep learning (DL) in recent years, existing DL-based methods, typically trained on a specific dose level and anatomical region, struggle to handle diverse noise characteristics and anatomical heterogeneity during varied scanning conditions, limiting their generalizability and robustness in clinical scenarios. In this paper, we propose FoundDiff, a foundational diffusion model for unified and generalizable LDCT denoising across various dose levels and anatomical regions. FoundDiff employs a two-stage strategy: (i) dose-anatomy perception and (ii) adaptive denoising. First, we develop a dose- and anatomy-aware contrastive language-image pre-training model (DA-CLIP) to achieve robust dose and anatomy perception by leveraging specialized contrastive learning strategies to learn continuous representations that quantify ordinal dose variations and identify salient anatomical regions. Second, we design a dose- and anatomy-aware diffusion model (DA-Diff) to perform adaptive and generalizable denoising by synergistically integrating the learned dose and anatomy embeddings from DA-CLIP into diffusion process via a novel dose and anatomy conditional block (DACB) based on Mamba. Extensive experiments on a large simulated multi-dose CT dataset spanning three anatomical regions, together with cross-dataset evaluations on Mayo-2016, CQ500, and piglet datasets, demonstrate superior denoising performance and strong generalization to unseen dose levels and anatomical regions. The codes and models are available at https: //github.com/hao1635/FoundDiff.

cs.CV↗

arXiv2026

An evidence-guided reinforcement learning method to improve psychiatric reasoning in small language models

Privacy and computational constraints limit the use of large language models in psychiatry, while adapting small language models (SLMs) often requires substantial data and expert annotation. We developed ClinMPO, an evidence-guided reinforcement-learning framework guided by the psychiatrist-defined Clinical Psychiatry Thinking Strategy (CPTS). ClinMPO uses ClinRM, a reward model trained on 18,569 question--answer pairs from 4,474 psychiatry articles. We evaluated four Qwen3 sizes on 1,737 model-screened questions. ClinMPO outperformed Base, supervised fine-tuning and standard group relative policy optimization across scales. From responses by 300 senior pre-licensure medical students, we established the human baseline, a medical-student reference. The 4B model approached this baseline, whereas the 8B model surpassed it and ranked first among 31 models and post-training variants. ClinMPO improved performance across two complementary schemes covering ICD-11 diagnostic categories and psychiatric practice competencies. Blinded assessment by three clinicians showed improved rationale quality across CPTS criteria. These findings highlight how existing clinical evidence and specialist knowledge can be incorporated into the development of medical AI systems through evidence-guided learning.

cs.CL↗

arXiv2026

SwarmBench: Can Large Language Models Act as Agent Swarm Orchestrators?

Large language model-based multi-agent systems are evolving from fixed interaction topologies toward dynamically orchestrated Agent Swarms. However, existing benchmarks are still largely based on single-agent or general-purpose agent tasks, making it difficult to systematically evaluate key orchestration capabilities. We propose SwarmBench, a benchmark that evaluates model performance from multiple perspectives, including accuracy, efficiency, cost, and process quality. Experimental results show that current models exhibit substantial differences in orchestration capability. These differences are reflected not only in final accuracy, efficiency, and cost, but also in the overall quality of the orchestration process itself. Based on these findings, we further propose SwarmExp, a simple yet effective method based on experience extraction and experience replay, which consistently improves the orchestration performance of large language models.

cs.CL↗

arXiv2026

Quantifying Error Tolerance in Synthetic Data: An Atomic-level Operand vs. Operator Perturbation Study

Synthetic data generation has become a cornerstone for advancing large language models. However, the lack of the quantitative analysis for error tolerance became a critical bottleneck. Consequently, current filtering strategies fluctuate between two extremes: they are either overly aggressive, risking the exclusion of potentially valuable samples, or overly permissive, failing to eliminate erroneous samples effectively. To bridge this gap, this paper introduces Atomic Tree Operation Modeling (ATOM), a framework that decomposes data into functional units ($f(x)\rightarrow y$). ATOM distinguishes benign Operand $x$ perturbations from fatal Operator $f$ perturbations. The former are needlessly discarded by aggressive filtering, while the latter slip through permissive filtering. Our experiments reveal a double dissociation: models are robust to operand perturbations but collapse under operator perturbations. By prioritizing operator over aggressive operand precision, our ATOM-synthesized data outperforms rigorous baselines (e.g., +3.1% gain over LIMA), suggesting that operator diversity matters more than operand precision. Our code is available at https://github.com/Lut-hub/ATOM.

cs.CL↗

arXiv2026

RuleWeaver: Benchmarking Rule-Centered Scenario Reasoning for Large Language Models

Large language models (LLMs) are increasingly applied to specialized domains, where effective use of domain expertise often requires reasoning over complex rules in concrete scenarios. However, existing benchmarks only partially evaluate this capability, as they either focus on output-level instruction constraints or overlook the distinct roles that rules play in scenario reasoning. To address these gaps, this paper introduces RuleWeaver, a benchmark construction framework for evaluating rule-centered scenario reasoning. RuleWeaver starts from corpus-derived IF-THEN Meta Rules, progressively augments them into complex rules, and composes these rules into rule-centered scenario QA instances. Beyond final-answer correctness, RuleWeaver further supports process-level evaluation through rubric-based answer quality, rule recall, and rule precision. Experiments on 11 representative LLMs show that current models still struggle with complex rule-centered scenario reasoning, with even the best-performing model achieving only around 50% of the maximum rubric score. We make our code and dataset available here: https://github.com/SharkSpicy-NLP/RuleWeaver.

cs.CL↗

arXiv2026

Beyond Factual Knowledge: Benchmarking and Learning Step-Level Procedural Rule Reasoning in Large Language Models

Large language models (LLMs) excel at text understanding and generation, yet still struggle to reliably understand and apply externally provided procedural rules at scale. To evaluate this capability, we introduce RuleWorld, a large-scale benchmark that reformulates rules as globally reusable abstract units rather than instance-specific facts. In RuleWorld, several scenarios, including single-rule, parallel multi-rule, and multi-hop reasoning, are settled for comprehensive evaluation. We further propose DynaRule, an end-to-end framework that injects the given rules into the KV cache and turns retrieval into an internal, learnable, step-wise process. Specifically, DynaRule employs Stacked Step-Level Attention Training with a special token to enable dynamic rule re-attention and updating during inference. In this way, the model can re-attend to the most relevant rules at each step, dynamically replacing outdated ones to support more stable multi-step reasoning. Experiments on RuleWorld show that existing LLMs face challenges under large rule pools, while DynaRule improves average QA accuracy by up to 19 points and achieves over 85% Recall@1 at 10K rules, outperforming strong baselines by large margins. We make our code and dataset available here: https://github.com/SharkSpicy-NLP/Beyond-Factual-Knowledge.

cs.CL↗

arXiv2026

AI Can Learn Scientific Taste

Scientific discovery depends on expert judgement and foresight, which we call scientific taste: the ability to judge and propose research ideas with the potential for long-term scientific impact. Scientific taste is largely concentrated among highly experienced researchers, whose expertise is usually limited to a few specialised fields. If AI could learn scientific taste, it could reduce reliance on human experts and accelerate scientific discovery. Whether AI can learn this ability remains an open question. We introduce Reinforcement Learning from Community Feedback (RLCF) to learn judgement and ideation. Scientific Judge learns from community feedback, such as citations. Scientific Thinker learns to propose research ideas with high potential impact. Experiments show that Scientific Judge outperforms strong LLM baselines and that learned judgement generalises to future-year papers, other community metrics, and unseen fields. Furthermore, Scientific Thinker proposes research ideas with higher potential impact than those proposed by baselines. These results suggest that AI can learn scientific taste, marking an important step towards AI systems that could help accelerate scientific discovery.

cs.CL↗

arXiv2026

Constitutional Midtraining: Content Presence Drives Alignment Gains

Post-training alignment is often shallow, eroding under fine-tuning. It remains untested as to whether constitutional midtraining interventions can produce durable alignment when cleanly isolated from post-training. We build a 394M-token constitutional corpus from Anthropic's Constitution and apply constitutional midtraining at 120B scale, where principled, values-based content is inserted into midtraining. A 2x2 design (curriculum ordering x deliberative reasoning) was used to produce four constitutionally midtrained conditions, plus a control, which were evaluated on self-generated and established benchmarks including alignment under pressure, value conflict resolution, blackmail, and emergent misalignment. All models were evaluated across three stages: post-midtraining, post-SFT, and post-benign fine-tuning. Constitutionally midtrained models outperformed the control on alignment generalization and durability, notably on blackmail: SFT instilled a blackmail propensity in all models, but constitutional midtraining blunted it, with the advantage surviving benign fine-tuning (-17.5pp). This durability did not extend to settings that required active resistance to in-context pressure or conflict, where the advantage attenuates after SFT. The presence of constitutional content at midtraining also mattered more than its structure, and constitutional midtraining incurred no capability cost, on average, at any stage (MMLU, ARC-Easy, piqa, GSM8K). A modest amount of constitutional content at midtraining could therefore yield broad, persistent alignment gains, offering a cheap, complementary addition to SFT-centered pipelines. Code, data, and models are available.

cs.CL↗

arXiv2026

Quantization Degradation in Large Language Models: A Signal-Noise Perspective

Post-training quantization reduces the deployment cost of large language models, yet how severely a quantized model degrades is not determined by bit-width alone. We systematically study weight-only post-training quantization across bit-widths, quantization methods, model scales and downstream tasks on multiple model families. We observe that such degradation varies substantially across these factors: 4-bit quantization usually preserves performance, 2-bit often causes broad degradation, and at 3-bit, degradation becomes apparent but varies markedly with task type, quantization method and model scale. To explain this variability, we use the signal-to-noise ratio (SNR) to measure how strongly quantization perturbs full-precision representations. We trace degradation back to two linked processes: how quantization errors arise within individual modules, and how they accumulate across layers. First, a source SNR decomposition shows that newly introduced errors depend on three factors: the magnitude of the weight error, the strength of the task-specific signal, and how strongly the quantization error aligns with task-specific activations. Different factors affect these components in distinct ways. Second, a cross-layer propagation analysis shows that these errors can be attenuated, preserved, or amplified as they pass across layers, and that larger models benefit from weaker error amplification. Together, these results establish that quantization degradation is governed by how errors are introduced at the source and how they accumulate across the network.

cs.AI↗

arXiv2026

GraphWalker: Agentic Knowledge Graph Question Answering via Synthetic Trajectory Curriculum

Agentic knowledge graph question answering (KGQA) requires an agent to iteratively interact with knowledge graphs (KGs), posing challenges in both training data scarcity and reasoning generalization. Specifically, existing approaches often restrict agent exploration: prompting-based methods lack autonomous navigation training, while current training pipelines usually confine reasoning to predefined trajectories. To this end, this paper proposes GraphWalker, a novel agentic KGQA framework that addresses these challenges through Automated Trajectory Synthesis and Stage-wise Fine-tuning. GraphWalker adopts a two-stage SFT training paradigm: First, the agent is trained on structurally diverse trajectories synthesized from constrained random-walk paths, establishing a broad exploration prior over the KG; Second, the agent is further fine-tuned on a small set of expert trajectories to develop reflection and error recovery capabilities. Extensive experiments demonstrate that our stage-wise SFT paradigm unlocks a higher performance ceiling for a lightweight reinforcement learning (RL) stage, enabling GraphWalker to achieve state-of-the-art performance on CWQ and WebQSP. Additional results on GrailQA and our constructed GraphWalkerBench confirm that GraphWalker enhances generalization to out-of-distribution reasoning paths. The code is publicly available at https://github.com/XuShuwenn/GraphWalker.

cs.CL↗

arXiv2026

Beyond Simply Environment Scaling: Designing Effective Environment Distributions for Multimodal Agent Learning

Recent works train agents by constructing large-scale multimodal environment pools. However, we find that simply increasing the number of multimodal environments does not always benefit. We further analyze the limitations in current multimodal environment distributions through a series of experiments. Based on these findings, we study how to build more effective training environment distributions from two dimensions: **diversity** and **difficulty structure**. For diversity, we propose **Ability-aware Environment Selection (AES)** to obtain diverse environment sets. For difficulty structure, we propose **Hierarchical Difficulty Curriculum (HDC)**, which organizes curriculum learning through two difficulty levels: harness weakening and state-scale progression. Experiments show that AES and HDC effectively improve multimodal agent training.

cs.CV↗

arXiv2026

SFT Conflicts, RL Coexists: A Theoretical and Empirical Analysis of Multi-Task Learning for LLMs

Supervised Fine-Tuning (SFT) and Reinforcement Learning (RL) exhibit fundamentally different behaviors in enhancing multi-task reasoning for large language models (LLMs). Our preliminary experiments revealed a phenomenon: SFT suffers from severe task conflicts under multi-stage training, whereas RL enables stable coexistence across diverse tasks. Empirically, we trace this to the parameter level, observing that RL induces sparse and approximately orthogonal updates across tasks. We provide a theoretical explanation for this mechanism by analyzing multi-task gradient interference. Our results reveal a distinction: interference in SFT is norm-limited, scaling with the absolute gradient magnitude, whereas interference in RL is variance-limited, bounded by the gradient variance induced by advantage normalization and on-policy optimization. This small variance bound yields near-orthogonal optimization directions across tasks. Leveraging this insight, we propose Parallel-RL, a paradigm that decouples multi-task training, significantly improving efficiency and flexibility.

cs.CL↗

arXiv2026

LongCrafter: Towards Diverse Long-Context Understanding via Evidence-Graph-Guided Instruction Synthesis

Synthesizing long-context supervised fine-tuning (SFT) data is a scalable way to enhance the long-context understanding of large language models (LLMs), yet existing approaches share three limitations: narrow task coverage, insufficient instruction difficulty, and a lack of faithfulness supervision. We propose \textbf{LongCrafter}, a structured synthesis framework that couples a hierarchical task taxonomy with an evidence-grounded pipeline. The taxonomy organizes long-context understanding into local/shallow and global/deep levels and yields 32 fine-grained task types that serve as a global generative prior. Guided by this taxonomy, LongCrafter constructs task-aligned long contexts, decomposes them into explicit evidence graphs that model cross-paragraph dependencies, and generates instruction--response pairs strictly grounded in the located evidence spans, ensuring both controllable difficulty and faithful, traceable reasoning. Models fine-tuned on LongCrafter data outperform all SFT baselines and even the official post-trained models on LongBench, LongBench~v2, and LooGLE across both Qwen2.5-7B and LLaMA-3.1-8B, with the largest gains on high-difficulty tasks. Further analysis shows that LongCrafter data is more diverse and better spread across difficulty levels, and that the trained models locate evidence robustly regardless of position, effectively mitigating the ``lost in the middle'' problem.

cs.CL↗

arXiv2026

SWE-Touch: Benchmarking Coding Agents When Users Touch the Code

Real-world software development requires coding agents to operate in shared workspaces where users may inspect and modify code during an ongoing task, yet existing repository-level benchmarks typically evaluate agents working alone or restrict user participation to messages. This leads us to ask: how do coding agents understand and respond to code changes in a shared workspace? We introduce SWE-Touch, a framework that stress-tests this setting through validated Counter-Edits: plausible edits to task-relevant code that conflict with task completion. SWE-Touch mines task-critical regions from multiple repair trajectories, uses a separate User Patch Generator to construct the edits, and injects them with contextual user messages when agents reach the relevant code. We evaluate nine coding models on SWE-bench Verified, with additional experiments on longer-horizon tasks from SWE-Bench Pro and DeepSWE. Counter-Edit lowers average resolve rate by 7.7 percentage points on SWE-bench Verified, with degradation also persisting on both longer-horizon benchmarks. Trajectory analysis links these failures to limited awareness of the evolving workspace: agents may retain conflicting code or replace it without sufficiently re-inspecting the repository and validating the revised code with targeted tests. These findings show that strong autonomous performance does not yet ensure the state awareness and adaptive behavior needed for shared-workspace collaboration, and point to detecting workspace changes, reconciling conflicting edits with the task, and verifying the affected behavior as key capabilities for future optimization.

cs.SE↗

arXiv2026

The Physics of Multi-Turn Long-Horizon Planning: From Pre-training to Post-training via Single- and Multi-Teacher On-Policy Agentic Distillation

Multi-turn long-horizon planning is critical for foundation model agents, yet how to fundamentally improve it remains unclear. Existing models are trained on uncontrollable and opaque Internet data, making it difficult to identify how planning ability is acquired, shaped, and integrated. To address this challenge, we introduce a unified and controlled multi-turn environment that enables precise control. It allows systematically study long-horizon planning across three stages. (1) Planning ability acquisition during pre-training. We study data format, distribution, and quality. Explicit world model construction through CoT state transition modeling yields stronger long-horizon generalization. Atomic skills alone are insufficient for compositional generalization, whereas a litte long-horizon data works. Moreover, suboptimal trajectories severely impair performance because errors amplify over long horizons. (2) Planning ability shaping via GRPO and OPD post-training. Through mutual information, we distinguish general planning patterns from task-specific planning knowledge. For planning patterns, we identify three application regions of post-training: unnecessary, effective, and unsupported. OPD has a broader effective region than GRPO under low-quality and long-horizon settings, as it provides more consistent update directions. For planning knowledge, distilling unseen procedures from a teacher with different knowledge may impair student's prior world modeling without fully establishing new knowledge. (3) Planning ability integration through MOPD post-training. We show that multi-teacher on-policy distillation (MOPD) integrates capabilities by converging to shared planning-pattern across environments. Compatible patterns enable cross-environment generalization, partially shared patterns support continual learning, while completely conflicting patterns cause severe interference.

cs.CL↗

arXiv2026

MemTools: A Unified Research Framework for Interoperable Agent Memory

While memory systems are essential for agent architectures, pervasive architectural fragmentation restricts systematic research. Existing implementations typically couple different stages of the memory lifecycle, entangle evaluation logic with specific datasets, and provide limited support for the management of heterogeneous memory types. We introduce MemTools, an interoperability research framework that decouples memory system components from their underlying deployment environments. MemTools standardizes the memory lifecycle through declarative data contracts, enabling the interchangeable assembly of components across different systems. It orthogonally separates benchmark datasets from execution protocols to facilitate controlled assessments. Furthermore, MemTools provides a unified computational interface for coordinating symbolic, neural, and multimodal memory representations within a shared runtime. Empirical evaluations on cross-system component integration, evaluation protocol reconfiguration, and heterogeneous memory coordination demonstrate that MemTools enables systematic isolation and analysis of memory design variables. These findings suggest that MemTools provides a practical and extensible infrastructure for advancing principled research on agent memory.

cs.CL↗

arXiv2026

MMR-V: What's Left Unsaid? A Benchmark for Multimodal Deep Reasoning in Videos

The sequential structure of videos poses a challenge to the ability of multimodal large language models (MLLMs) to locate multi-frame evidence and conduct multimodal reasoning. However, existing video benchmarks mainly focus on understanding tasks, which only require models to match frames mentioned in the question (hereafter referred to as "question frame") and perceive a few adjacent frames. To address this gap, we propose MMR-V: A Benchmark for Multimodal Deep Reasoning in Videos. The benchmark is characterized by the following features. (1) Long-range, multi-frame reasoning: Models are required to infer and analyze evidence frames that may be far from the question frame. (2) Beyond perception: Questions cannot be answered through direct perception alone but require reasoning over hidden information. (3) Reliability: All tasks are manually annotated, referencing extensive real-world user understanding to align with common perceptions. (4) Confusability: Carefully designed distractor annotation strategies to reduce model shortcuts. MMR-V consists of 317 videos and 1,257 tasks. Our experiments reveal that current models still struggle with multi-modal reasoning; even the best-performing model, Gemini-2.5-pro, achieves only 64.3% accuracy. Additionally, current reasoning enhancement strategies (Chain-of-Thought and scaling test-time compute) bring limited gains. Error analysis indicates that the CoT demanded for multi-modal reasoning differs from it in textual reasoning, which partly explains the limited performance gains. We hope that MMR-V can inspire further research into enhancing multi-modal reasoning capabilities.

cs.CV↗