arXiv subjects

Mingyang Wang

Publications and source records attributed to Mingyang Wang.

At least 55 records · Page 3Linked to original sources

arXiv2025

Lost in Multilinguality: Dissecting Cross-lingual Factual Inconsistency in Transformer Language Models

Multilingual language models (MLMs) store factual knowledge across languages but often struggle to provide consistent responses to semantically equivalent prompts in different languages. While previous studies point out this cross-lingual inconsistency issue, the underlying causes remain unexplored. In this work, we use mechanistic interpretability methods to investigate cross-lingual inconsistencies in MLMs. We find that MLMs encode knowledge in a language-independent concept space through most layers, and only transition to language-specific spaces in the final layers. Failures during the language transition often result in incorrect predictions in the target language, even when the answers are correct in other languages. To mitigate this inconsistency issue, we propose a linear shortcut method that bypasses computations in the final layers, enhancing both prediction accuracy and cross-lingual consistency. Our findings shed light on the internal mechanisms of MLMs and provide a lightweight, effective strategy for producing more consistent factual outputs.

cs.CL↗

arXiv2025

Fast Iterative Region Inflation for Computing Large 2-D/3-D Convex Regions of Obstacle-Free Space

Convex polytopes have compact representations and exhibit convexity, which makes them suitable for abstracting obstacle-free spaces from various environments. Existing generation methods struggle with balancing high-quality output and efficiency. Moreover, another crucial requirement for convex polytopes to accurately contain certain seed point sets, such as a robot or a front-end path, is proposed in various tasks, which we refer to as manageability. In this paper, we propose Fast Iterative Regional Inflation (FIRI) to generate high-quality convex polytope while ensuring efficiency and manageability simultaneously. FIRI consists of two iteratively executed submodules: Restrictive Inflation (RsI) and Maximum Volume Inscribed Ellipsoid (MVIE) computation. By explicitly incorporating constraints that include the seed point set, RsI guarantees manageability. Meanwhile, iterative MVIE optimization ensures high-quality result through monotonic volume bound improvement.In terms of efficiency, we design methods tailored to the low-dimensional and multi-constrained nature of both modules, resulting in orders of magnitude improvement compared to generic solvers. Notably, in 2-D MVIE, we present the first linear-complexity analytical algorithm for maximum area inscribed ellipse, further enhancing the performance in 2-D cases. Extensive benchmarks conducted against state-of-the-art methods validate the superior performance of FIRI in terms of quality, manageability, and efficiency. Furthermore, various real-world applications showcase the generality and practicality of FIRI.

cs.RO↗

arXiv2025

Discovery of novel antimicrobial peptides with notable antibacterial potency by a LLM-based foundation model

Large language models (LLMs) have shown remarkable advancements in chemistry and biomedical research, acting as versatile foundation models for various tasks. We introduce AMP-Designer, an LLM-based approach for swiftly designing novel antimicrobial peptides (AMPs) with desired properties. Within 11 days, AMP-Designer achieved the de novo design of 18 AMPs with broad-spectrum activity against Gram-negative bacteria. In vitro validation revealed a 94.4% success rate, with two candidates demonstrating exceptional antibacterial efficacy, minimal hemotoxicity, stability in human plasma, and low potential to induce resistance, as evidenced by significant bacterial load reduction in murine lung infection experiments. The entire process, from design to validation, concluded in 48 days. AMP-Designer excels in creating AMPs targeting specific strains despite limited data availability, with a top candidate displaying a minimum inhibitory concentration of 2.0 μg/ml against Propionibacterium acnes. Integrating advanced machine learning techniques, AMP-Designer demonstrates remarkable efficiency, paving the way for innovative solutions to antibiotic resistance.

q-bio.BM↗

arXiv2025

Gnothi Seauton: Empowering Faithful Self-Interpretability in Black-Box Transformers

The debate between self-interpretable models and post-hoc explanations for black-box models is central to Explainable AI (XAI). Self-interpretable models, such as concept-based networks, offer insights by connecting decisions to human-understandable concepts but often struggle with performance and scalability. Conversely, post-hoc methods like Shapley values, while theoretically robust, are computationally expensive and resource-intensive. To bridge the gap between these two lines of research, we propose a novel method that combines their strengths, providing theoretically guaranteed self-interpretability for black-box models without compromising prediction accuracy. Specifically, we introduce a parameter-efficient pipeline, AutoGnothi, which integrates a small side network into the black-box model, allowing it to generate Shapley value explanations without changing the original network parameters. This side-tuning approach significantly reduces memory, training, and inference costs, outperforming traditional parameter-efficient methods, where full fine-tuning serves as the optimal baseline. AutoGnothi enables the black-box model to predict and explain its predictions with minimal overhead. Extensive experiments show that AutoGnothi offers accurate explanations for both vision and language tasks, delivering superior computational efficiency with comparable interpretability.

cs.LG↗

arXiv2025

Bring Your Own Knowledge: A Survey of Methods for LLM Knowledge Expansion

Adapting large language models (LLMs) to new and diverse knowledge is essential for their lasting effectiveness in real-world applications. This survey provides an overview of state-of-the-art methods for expanding the knowledge of LLMs, focusing on integrating various knowledge types, including factual information, domain expertise, language proficiency, and user preferences. We explore techniques, such as continual learning, model editing, and retrieval-based explicit adaptation, while discussing challenges like knowledge consistency and scalability. Designed as a guide for researchers and practitioners, this survey sheds light on opportunities for advancing LLMs as adaptable and robust knowledge systems.

cs.CL↗

arXiv2024

How Transliterations Improve Crosslingual Alignment

Recent studies have shown that post-aligning multilingual pretrained language models (mPLMs) using alignment objectives on both original and transliterated data can improve crosslingual alignment. This improvement further leads to better crosslingual transfer performance. However, it remains unclear how and why a better crosslingual alignment is achieved, as this technique only involves transliterations, and does not use any parallel data. This paper attempts to explicitly evaluate the crosslingual alignment and identify the key elements in transliteration-based approaches that contribute to better performance. For this, we train multiple models under varying setups for two pairs of related languages: (1) Polish and Ukrainian and (2) Hindi and Urdu. To assess alignment, we define four types of similarities based on sentence representations. Our experimental results show that adding transliterations alone improves the overall similarities, even for random sentence pairs. With the help of auxiliary transliteration-based alignment objectives, especially the contrastive objective, the model learns to distinguish matched from random pairs, leading to better crosslingual alignment. However, we also show that better alignment does not always yield better downstream performance, suggesting that further research is needed to clarify the connection between alignment and performance. The code implementation is based on \url{https://github.com/cisnlp/Transliteration-PPA}.

cs.CL↗

arXiv2024

Better Call SAUL: Fluent and Consistent Language Model Editing with Generation Regularization

To ensure large language models contain up-to-date knowledge, they need to be updated regularly. However, model editing is challenging as it might also affect knowledge that is unrelated to the new data. State-of-the-art methods identify parameters associated with specific knowledge and then modify them via direct weight updates. However, these locate-and-edit methods suffer from heavy computational overhead and lack theoretical validation. In contrast, directly fine-tuning the model on requested edits affects the model's behavior on unrelated knowledge, and significantly damages the model's generation fluency and consistency. To address these challenges, we propose SAUL, a streamlined model editing method that uses sentence concatenation with augmented random facts for generation regularization. Evaluations on three model editing benchmarks show that SAUL is a practical and reliable solution for model editing outperforming state-of-the-art methods while maintaining generation quality and reducing computational overhead.

cs.CL↗

arXiv2024

Token-Mol 1.0: Tokenized drug design with large language model

Significant interests have recently risen in leveraging sequence-based large language models (LLMs) for drug design. However, most current applications of LLMs in drug discovery lack the ability to comprehend three-dimensional (3D) structures, thereby limiting their effectiveness in tasks that explicitly involve molecular conformations. In this study, we introduced Token-Mol, a token-only 3D drug design model. This model encodes all molecular information, including 2D and 3D structures, as well as molecular property data, into tokens, which transforms classification and regression tasks in drug discovery into probabilistic prediction problems, thereby enabling learning through a unified paradigm. Token-Mol is built on the transformer decoder architecture and trained using random causal masking techniques. Additionally, we proposed the Gaussian cross-entropy (GCE) loss function to overcome the challenges in regression tasks, significantly enhancing the capacity of LLMs to learn continuous numerical values. Through a combination of fine-tuning and reinforcement learning (RL), Token-Mol achieves performance comparable to or surpassing existing task-specific methods across various downstream tasks, including pocket-based molecular generation, conformation generation, and molecular property prediction. Compared to existing molecular pre-trained models, Token-Mol exhibits superior proficiency in handling a wider range of downstream tasks essential for drug design. Notably, our approach improves regression task accuracy by approximately 30% compared to similar token-only methods. Token-Mol overcomes the precision limitations of token-only models and has the potential to integrate seamlessly with general models such as ChatGPT, paving the way for the development of a universal artificial intelligence drug design model that facilitates rapid and high-quality drug design by experts.

q-bio.BM↗

arXiv2024

Learn it or Leave it: Module Composition and Pruning for Continual Learning

In real-world environments, continual learning is essential for machine learning models, as they need to acquire new knowledge incrementally without forgetting what they have already learned. While pretrained language models have shown impressive capabilities on various static tasks, applying them to continual learning poses significant challenges, including avoiding catastrophic forgetting, facilitating knowledge transfer, and maintaining parameter efficiency. In this paper, we introduce MoCL-P, a novel lightweight continual learning method that addresses these challenges simultaneously. Unlike traditional approaches that continuously expand parameters for newly arriving tasks, MoCL-P integrates task representation-guided module composition with adaptive pruning, effectively balancing knowledge integration and computational overhead. Our evaluation across three continual learning benchmarks with up to 176 tasks shows that MoCL-P achieves state-of-the-art performance and improves parameter efficiency by up to three times, demonstrating its potential for practical applications where resource requirements are constrained.

cs.LG↗

arXiv2024

The Impact of Demonstrations on Multilingual In-Context Learning: A Multidimensional Analysis

In-context learning is a popular inference strategy where large language models solve a task using only a few labeled demonstrations without needing any parameter updates. Although there have been extensive studies on English in-context learning, multilingual in-context learning remains under-explored, and we lack an in-depth understanding of the role of demonstrations in this context. To address this gap, we conduct a multidimensional analysis of multilingual in-context learning, experimenting with 5 models from different model families, 9 datasets covering classification and generation tasks, and 56 typologically diverse languages. Our results reveal that the effectiveness of demonstrations varies significantly across models, tasks, and languages. We also find that strong instruction-following models including Llama 2-Chat, GPT-3.5, and GPT-4 are largely insensitive to the quality of demonstrations. Instead, a carefully crafted template often eliminates the benefits of demonstrations for some tasks and languages altogether. These findings show that the importance of demonstrations might be overestimated. Our work highlights the need for granular evaluation across multiple axes towards a better understanding of in-context learning.

cs.CL↗

arXiv2024

AAdaM at SemEval-2024 Task 1: Augmentation and Adaptation for Multilingual Semantic Textual Relatedness

This paper presents our system developed for the SemEval-2024 Task 1: Semantic Textual Relatedness for African and Asian Languages. The shared task aims at measuring the semantic textual relatedness between pairs of sentences, with a focus on a range of under-represented languages. In this work, we propose using machine translation for data augmentation to address the low-resource challenge of limited training data. Moreover, we apply task-adaptive pre-training on unlabeled task data to bridge the gap between pre-training and task adaptation. For model training, we investigate both full fine-tuning and adapter-based tuning, and adopt the adapter framework for effective zero-shot cross-lingual transfer. We achieve competitive results in the shared task: our system performs the best among all ranked teams in both subtask A (supervised learning) and subtask C (cross-lingual transfer).

cs.CL↗

arXiv2024

Imp: Highly Capable Large Multimodal Models for Mobile Devices

By harnessing the capabilities of large language models (LLMs), recent large multimodal models (LMMs) have shown remarkable versatility in open-world multimodal understanding. Nevertheless, they are usually parameter-heavy and computation-intensive, thus hindering their applicability in resource-constrained scenarios. To this end, several lightweight LMMs have been proposed successively to maximize the capabilities under constrained scale (e.g., 3B). Despite the encouraging results achieved by these methods, most of them only focus on one or two aspects of the design space, and the key design choices that influence model capability have not yet been thoroughly investigated. In this paper, we conduct a systematic study for lightweight LMMs from the aspects of model architecture, training strategy, and training data. Based on our findings, we obtain Imp -- a family of highly capable LMMs at the 2B-4B scales. Notably, our Imp-3B model steadily outperforms all the existing lightweight LMMs of similar size, and even surpasses the state-of-the-art LMMs at the 13B scale. With low-bit quantization and resolution reduction techniques, our Imp model can be deployed on a Qualcomm Snapdragon 8Gen3 mobile chip with a high inference speed of about 13 tokens/s.

cs.CV↗

arXiv2024

Rehearsal-Free Modular and Compositional Continual Learning for Language Models

Continual learning aims at incrementally acquiring new knowledge while not forgetting existing knowledge. To overcome catastrophic forgetting, methods are either rehearsal-based, i.e., store data examples from previous tasks for data replay, or isolate parameters dedicated to each task. However, rehearsal-based methods raise privacy and memory issues, and parameter-isolation continual learning does not consider interaction between tasks, thus hindering knowledge transfer. In this work, we propose MoCL, a rehearsal-free Modular and Compositional Continual Learning framework which continually adds new modules to language models and composes them with existing modules. Experiments on various benchmarks show that MoCL outperforms state of the art and effectively facilitates knowledge transfer.

cs.LG↗

arXiv2024

OFA: A Framework of Initializing Unseen Subword Embeddings for Efficient Large-scale Multilingual Continued Pretraining

Instead of pretraining multilingual language models from scratch, a more efficient method is to adapt existing pretrained language models (PLMs) to new languages via vocabulary extension and continued pretraining. However, this method usually randomly initializes the embeddings of new subwords and introduces substantially more embedding parameters to the model, thus weakening the efficiency. To address these issues, we propose a novel framework: $\textbf{O}$ne $\textbf{F}$or $\textbf{A}$ll ($\textbf{OFA}$), which wisely initializes the embeddings of unseen subwords and thus can adapt a PLM to multiple languages efficiently and effectively. OFA takes advantage of external well-aligned multilingual static word vectors and injects the alignment knowledge into the subword embeddings. In addition, OFA applies matrix factorization and replaces the cumbersome embeddings with two lower-dimensional matrices, which largely reduces the number of parameters. We show OFA accelerates the convergence of continued pretraining, which is environmentally friendly as much fewer carbon footprints are generated. Through extensive experiments, we demonstrate OFA can achieve competitive or better performance than default continued pretraining baselines on a wide range of crosslingual downstream tasks. We make our code and models publicly available.

cs.CL↗

arXiv2024

Deep Geometry Handling and Fragment-wise Molecular 3D Graph Generation

Most earlier 3D structure-based molecular generation approaches follow an atom-wise paradigm, incrementally adding atoms to a partially built molecular fragment within protein pockets. These methods, while effective in designing tightly bound ligands, often overlook other essential properties such as synthesizability. The fragment-wise generation paradigm offers a promising solution. However, a common challenge across both atom-wise and fragment-wise methods lies in their limited ability to co-design plausible chemical and geometrical structures, resulting in distorted conformations. In response to this challenge, we introduce the Deep Geometry Handling protocol, a more abstract design that extends the design focus beyond the model architecture. Through a comprehensive review of existing geometry-related models and their protocols, we propose a novel hybrid strategy, culminating in the development of FragGen - a geometry-reliable, fragment-wise molecular generation method. FragGen marks a significant leap forward in the quality of generated geometry and the synthesis accessibility of molecules. The efficacy of FragGen is further validated by its successful application in designing type II kinase inhibitors at the nanomolar level.

physics.chem-ph↗

arXiv2023

GradSim: Gradient-Based Language Grouping for Effective Multilingual Training

Most languages of the world pose low-resource challenges to natural language processing models. With multilingual training, knowledge can be shared among languages. However, not all languages positively influence each other and it is an open research question how to select the most suitable set of languages for multilingual training and avoid negative interference among languages whose characteristics or data distributions are not compatible. In this paper, we propose GradSim, a language grouping method based on gradient similarity. Our experiments on three diverse multilingual benchmark datasets show that it leads to the largest performance gains compared to other similarity measures and it is better correlated with cross-lingual model performance. As a result, we set the new state of the art on AfriSenti, a benchmark dataset for sentiment analysis on low-resource African languages. In our extensive analysis, we further reveal that besides linguistic features, the topics of the datasets play an important role for language grouping and that lower layers of transformer models encode language-specific features while higher layers capture task-specific information.

cs.LG↗

arXiv2023

Interaction-Driven Active 3D Reconstruction with Object Interiors

We introduce an active 3D reconstruction method which integrates visual perception, robot-object interaction, and 3D scanning to recover both the exterior and interior, i.e., unexposed, geometries of a target 3D object. Unlike other works in active vision which focus on optimizing camera viewpoints to better investigate the environment, the primary feature of our reconstruction is an analysis of the interactability of various parts of the target object and the ensuing part manipulation by a robot to enable scanning of occluded regions. As a result, an understanding of part articulations of the target object is obtained on top of complete geometry acquisition. Our method operates fully automatically by a Fetch robot with built-in RGBD sensors. It iterates between interaction analysis and interaction-driven reconstruction, scanning and reconstructing detected moveable parts one at a time, where both the articulated part detection and mesh reconstruction are carried out by neural networks. In the final step, all the remaining, non-articulated parts, including all the interior structures that had been exposed by prior part manipulations and subsequently scanned, are reconstructed to complete the acquisition. We demonstrate the performance of our method via qualitative and quantitative evaluation, ablation studies, comparisons to alternatives, as well as experiments in a real environment.

cs.CV↗

arXiv2023

Robust and Efficient Trajectory Planning for Formation Flight in Dense Environments

Formation flight has a vast potential for aerial robot swarms in various applications. However, existing methods lack the capability to achieve fully autonomous large-scale formation flight in dense environments. To bridge the gap, we present a complete formation flight system that effectively integrates real-world constraints into aerial formation navigation. This paper proposes a differentiable graph-based metric to quantify the overall similarity error between formations. This metric is invariant to rotation, translation, and scaling, providing more freedom for formation coordination. We design a distributed trajectory optimization framework that considers formation similarity, obstacle avoidance, and dynamic feasibility. The optimization is decoupled to make large-scale formation flights computationally feasible. To improve the elasticity of formation navigation in highly constrained scenes, we present a swarm reorganization method that adaptively adjusts the formation parameters and task assignments by generating local navigation goals. A novel swarm agreement strategy called global-remap-local-replan and a formation-level path planner is proposed in this work to coordinate the global planning and local trajectory optimizations. To validate the proposed method, we design comprehensive benchmarks and simulations with other cutting-edge works in terms of adaptability, predictability, elasticity, resilience, and efficiency. Finally, integrated with palm-sized swarm platforms with onboard computers and sensors, the proposed method demonstrates its efficiency and robustness by achieving the largest scale formation flight in dense outdoor environments.

cs.RO↗