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Peng Ye

Publications and source records attributed to Peng Ye.

At least 55 records · Page 3Linked to original sources
arXiv2026

MLG-Stereo: ViT Based Stereo Matching with Multi-Stage Local-Global Enhancement

With the development of deep learning, ViT-based stereo matching methods have made significant progress due to their remarkable robustness and zero-shot ability. However, due to the limitations of ViTs in handling resolution sensitivity and their relative neglect of local information, the ability of ViT-based methods to predict details and handle arbitrary-resolution images is still weaker than that of CNN-based methods. To address these shortcomings, we propose MLG-Stereo, a systematic pipeline-level design that extends global modeling beyond the encoder stage. First, we propose a Multi-Granularity Feature Network to effectively balance global context and local geometric information, enabling comprehensive feature extraction from images of arbitrary resolution and bridging the gap between training and inference scales. Then, a Local-Global Cost Volume is constructed to capture both locally-correlated and global-aware matching information. Finally, a Local-Global Guided Recurrent Unit is introduced to iteratively optimize the disparity locally under the guidance of global information. Extensive experiments are conducted on multiple benchmark datasets, demonstrating that our MLG-Stereo exhibits highly competitive performance on the Middlebury and KITTI-2015 benchmarks compared to contemporaneous leading methods, and achieves outstanding results in the KITTI-2012 dataset.

cs.CV↗
arXiv2026

LSTM-MAS: A Long Short-Term Memory Inspired Multi-Agent System for Long-Context Understanding

Effectively processing long contexts remains a fundamental yet unsolved challenge for large language models (LLMs). Existing single-LLM-based methods primarily reduce the context window or optimize the attention mechanism, but they often encounter additional computational costs or constrained expanded context length. While multi-agent-based frameworks can mitigate these limitations, they remain susceptible to the accumulation of errors and the propagation of hallucinations. In this work, we draw inspiration from the Long Short-Term Memory (LSTM) architecture to design a Multi-Agent System called LSTM-MAS, emulating LSTM's hierarchical information flow and gated memory mechanisms for long-context understanding. Specifically, LSTM-MAS organizes agents in a chained architecture, where each node comprises a worker agent for segment-level comprehension, a filter agent for redundancy reduction, a judge agent for continuous error detection, and a manager agent for globally regulates information propagation and retention, analogous to LSTM and its input gate, forget gate, constant error carousel unit, and output gate. These novel designs enable controlled information transfer and selective long-term dependency modeling across textual segments, which can effectively avoid error accumulation and hallucination propagation. We conducted an extensive evaluation of our method. Compared with the previous best multi-agent approach, CoA, our model achieves improvements of 97.97%, 65.75%, 122.19%, 39.61% and 10.80% on Narrative QA, Qasper, HotpotQA, 2WikiMQA and MuSiQue, respectively.

cs.CL↗
arXiv2026

SAVE: A Generalizable Framework for Multi-Condition Single-Cell Generation with Gene Block Attention

Modeling single-cell gene expression across diverse biological and technical conditions is crucial for characterizing cellular states and simulating unseen scenarios. Existing methods often treat genes as independent tokens, overlooking their high-level biological relationships and leading to poor performance. We introduce SAVE, a unified generative framework based on conditional Transformers for multi-condition single-cell modeling. SAVE leverages a coarse-grained representation by grouping semantically related genes into blocks, capturing higher-order dependencies among gene modules. A Flow Matching mechanism and condition-masking strategy further enhance flexible simulation and enable generalization to unseen condition combinations. We evaluate SAVE on a range of benchmarks, including conditional generation, batch effect correction, and perturbation prediction. SAVE consistently outperforms state-of-the-art methods in generation fidelity and extrapolative generalization, especially in low-resource or combinatorially held-out settings. Overall, SAVE offers a scalable and generalizable solution for modeling complex single-cell data, with broad utility in virtual cell synthesis and biological interpretation. Our code is publicly available at https://github.com/fdu-wangfeilab/sc-save

cs.AI↗
arXiv2026

Small Model as Master Orchestrator: Learning Unified Agent-Tool Orchestration with Parallel Subtask Decomposition

Multi-agent systems (MAS) demonstrate clear advantages in tackling complex problems by coordinating diverse agents and external tools. However, most existing orchestration methods rely on static workflows or serial agent scheduling, and are further constrained by heterogeneous interface protocols between tools and agents. This leads to high system complexity and poor extensibility. To mitigate these issues, we propose Agent-as-Tool, a unified parallel orchestration paradigm that abstracts both agents and tools into a standardized, learnable action space with protocol normalization and explicit state feedback. Building on this paradigm, we train a lightweight orchestrator, ParaManager, which decouples planning decisions from subtask solving, enabling state-aware parallel subtask decomposition, delegation, and asynchronous execution. For training, we adopt a two-stage ParaManager training pipeline. It improves robustness by incorporating supervised fine-tuning (SFT) trajectories equipped with recovery mechanisms, and further applies reinforcement learning (RL) to achieve an optimal balance among task success, protocol compliance, diversity, and reasoning efficiency. Experiments show that ParaManager achieves strong performance across multiple benchmarks and exhibits robust generalization under unseen model pools.

cs.AI↗
arXiv2026

PaceLLM: Brain-Inspired Large Language Models for Long-Context Understanding

While Large Language Models (LLMs) demonstrate strong performance across domains, their long-context capabilities are limited by transient neural activations causing information decay and unstructured feed-forward network (FFN) weights leading to semantic fragmentation. Inspired by the brain's working memory and cortical modularity, we propose PaceLLM, featuring two innovations: (1) a Persistent Activity (PA) Mechanism that mimics prefrontal cortex (PFC) neurons' persistent firing by introducing an activation-level memory bank to dynamically retrieve, reuse, and update critical FFN states, addressing contextual decay; and (2) Cortical Expert (CE) Clustering that emulates task-adaptive neural specialization to reorganize FFN weights into semantic modules, establishing cross-token dependencies and mitigating fragmentation. Extensive evaluations show that PaceLLM achieves 6% improvement on LongBench's Multi-document QA and 12.5-17.5% performance gains on Infinite-Bench tasks, while extending measurable context length to 200K tokens in Needle-In-A-Haystack (NIAH) tests. This work pioneers brain-inspired LLM optimization and is complementary to other works. Besides, it can be generalized to any model and enhance their long-context performance and interpretability without structural overhauls.

q-bio.NC↗
arXiv2026

Infinite-component $BF$ field theory: Connection of fracton order, Toeplitz braiding, and non-Hermitian amplification

Building on the infinite-component Chern--Simons theory of three-dimensional fracton phases by Ma et al. [Phys. Rev. B 105, 195124 (2022)] and the Toeplitz braiding of anyons by Li et al.~[Phys. Rev B 110, 205108 (2024)], we show that stacking $(3+1)$D $BF$ topological field theories, which serve as low-energy effective descriptions of a class of three-dimensional topological orders, along a fourth spatial direction gives rise to an exotic class of four-dimensional fracton phases. Their low-energy physics is governed by a new field-theoretic framework, namely \textit{infinite-component $BF$} (i$BF$) \textit{theories}, characterized by asymmetric integer Toeplitz $K$ matrices. Under open boundary conditions along the stacking direction, i$BF$ theories with properly chosen $K$ matrices exhibit a striking phenomenon termed \textit{Toeplitz particle--loop braiding}, where a particle and a loop placed on opposite three-dimensional boundaries acquire a strongly oscillating yet robustly nonvanishing braiding phase even at infinite separation. This nonlocal braiding admits a geometric interpretation: adiabatically transporting the particle induces a winding boundary trajectory on the opposite boundary that encircles the loop. We show that this robustness originates from boundary zero singular modes (ZSMs) of Toeplitz $K$ matrices revealed by singular value decomposition, rather than from boundary zero eigenmodes responsible for previously known Toeplitz braiding of anyons, and that the same ZSM mechanism also underlies directional amplification in the rapidly developing field of non-Hermitian physics. We analytically and numerically study representative i$BF$ theories with Hatano--Nelson--type and non-Hermitian Su--Schrieffer--Heeger--type $K$ matrices, establishing a universal correspondence between ZSMs and Toeplitz particle--loop braiding.

cond-mat.str-el↗
arXiv2026

Fair splits flip the leaderboard: CHANRG reveals limited generalization in RNA secondary-structure prediction

Accurate prediction of RNA secondary structure underpins transcriptome annotation, mechanistic analysis of non-coding RNAs, and RNA therapeutic design. Recent gains from deep learning and RNA foundation models are difficult to interpret because current benchmarks may overestimate generalization across RNA families. We present the Comprehensive Hierarchical Annotation of Non-coding RNA Groups (CHANRG), a benchmark of 170{,}083 structurally non-redundant RNAs curated from more than 10 million sequences in Rfam~15.0 using structure-aware deduplication, genome-aware split design and multiscale structural evaluation. Across 29 predictors, foundation-model methods achieved the highest held-out accuracy but lost most of that advantage out of distribution, whereas structured decoders and direct neural predictors remained markedly more robust. This gap persisted after controlling for sequence length and reflected both loss of structural coverage and incorrect higher-order wiring. Together, CHANRG and a padding-free, symmetry-aware evaluation stack provide a stricter and batch-invariant framework for developing RNA structure predictors with demonstrable out-of-distribution robustness.

q-bio.BM↗
arXiv2026

Revisiting Multimodal KV Cache Compression: A Frequency-Domain-Guided Outlier-KV-Aware Approach

Multimodal large language models suffer from substantial inference overhead since multimodal KV Cache grows proportionally with the visual input length. Existing multimodal KV Cache compression methods mostly rely on attention score to reduce cache size, which makes them are incompatible with established efficient attention kernels (e.g., FlashAttention) and ignores the contribution of value vectors to the attention output. In this work, we revisit multimodal KV Cache compression from the perspective of the KV matrices' distribution. First, we observe that frequency-domain energy of multimodal KV matrices is predominantly concentrated in low-frequency and extract this principal energy via a low-pass filter. Further, we find that removing KV pairs that deviate substantially from this principal energy leads to a pronounced performance drop, which we define as Outlier KVs. Considering Outlier KVs are more likely to encode features critical for inference, we propose FlashCache, a frequency-domain-guided, Outlier-KV-aware KV Cache compression framework. First, we introduce an Outlier KV Recognition Module that models the principal component of multimodal KV matrices in the frequency domain and preferentially retains KV pairs that significantly deviate from it. Furthermore, Dynamic Budget Allocation Module is designed to adaptively determine the per-layer KV Cache size to retain more Outlier KVs. Experiments on multiple MLLMs and benchmarks demonstrate that FlashCache outperforms state-of-the-art multimoal KV compression methods, achieving up to 1.69 times faster decoding with 80% lower KV memory usage while maintaining task performance.

cs.LG↗
arXiv2026

Learning to Explore with Parameter-Space Noise: A Deep Dive into Parameter-Space Noise for Reinforcement Learning with Verifiable Rewards

Reinforcement Learning with Verifiable Rewards (RLVR) improves LLM reasoning, yet growing evidence indicates an exploration ceiling: it often reweights existing solution traces rather than discovering new strategies, limiting gains under large sampling budgets (e.g., pass-at-256). We address this limitation with PSN-RLVR, which perturbs policy parameters before rollout generation to induce temporally consistent, trajectory-level exploration that better preserves long-horizon chain-of-thought coherence than action-space noise. To mitigate the resulting sampling-update mismatch, we incorporate truncated importance sampling (TIS). To avoid expensive KL-based adaptive noise control, we propose a computationally efficient real-time adaptive noise scheduler driven by a lightweight surrogate that combines semantic diversity with normalized self-certainty. Instantiated on GRPO, a widely used RLVR method, PSN-GRPO consistently expands the effective reasoning capability boundary across multiple mathematical reasoning benchmarks and model families, yielding higher pass-at-k under large sampling budgets and outperforming prior exploration-oriented RLVR methods (e.g., Pass-at-k-style training) while remaining orthogonal and thus composable for additional gains.

cs.LG↗
arXiv2026

Beyond Gemini-3-Pro: Revisiting LLM Routing and Aggregation at Scale

Large Language Models (LLMs) have rapidly advanced, with Gemini-3-Pro setting a new performance milestone. In this work, we explore collective intelligence as an alternative to monolithic scaling, and demonstrate that open-source LLMs' collaboration can surpass Gemini-3-Pro. We first revisit LLM routing and aggregation at scale and identify three key bottlenecks: (1) current train-free routers are limited by a query-based paradigm focusing solely on textual similarity; (2) recent aggregation methods remain largely static, failing to select appropriate aggregators for different tasks;(3) the complementarity of routing and aggregation remains underutilized. To address these problems, we introduce JiSi, a novel framework designed to release the full potential of LLMs' collaboration through three innovations: (1) Query-Response Mixed Routing capturing both semantic information and problem difficulty; (2) Support-Set-based Aggregator Selection jointly evaluating the aggregation and domain capacity of aggregators; (3) Adaptive Routing-Aggregation Switch dynamically leveraging the advantages of routing and aggregation. Comprehensive experiments on nine benchmarks demonstrate that JiSi can surpass Gemini-3-Pro with only 47% costs by orchestrating ten open-source LLMs, while outperforming mainstream baselines. It suggests that collective intelligence represents a novel path towards Artificial General Intelligence (AGI).

cs.AI↗
arXiv2026

P1-VL: Bridging Visual Perception and Scientific Reasoning in Physics Olympiads

The transition from symbolic manipulation to science-grade reasoning represents a pivotal frontier for Large Language Models (LLMs), with physics serving as the critical test anchor for binding abstract logic to physical reality. Physics demands that a model maintain physical consistency with the laws governing the universe, a task that fundamentally requires multimodal perception to ground abstract logic in reality. At the Olympiad level, diagrams are often constitutive rather than illustrative, containing essential constraints, such as boundary conditions and spatial symmetries, that are absent from the text. To bridge this visual-logical gap, we introduce P1-VL, a family of open-source vision-language models engineered for advanced scientific reasoning. Our method harmonizes Curriculum Reinforcement Learning, which employs progressive difficulty expansion to stabilize post-training, with Agentic Augmentation, enabling iterative self-verification at inference. Evaluated on HiPhO, a rigorous benchmark of 13 exams from 2024-2025, our flagship P1-VL-235B-A22B becomes the first open-source Vision-Language Model (VLM) to secure 12 gold medals and achieves the state-of-the-art performance in the open-source models. Our agent-augmented system achieves the No.2 overall rank globally, trailing only Gemini-3-Pro. Beyond physics, P1-VL demonstrates remarkable scientific reasoning capacity and generalizability, establishing significant leads over base models in STEM benchmarks. By open-sourcing P1-VL, we provide a foundational step toward general-purpose physical intelligence to better align visual perceptions with abstract physical laws for machine scientific discovery.

cs.AI↗
arXiv2026

InternAgent-1.5: A Unified Agentic Framework for Long-Horizon Autonomous Scientific Discovery

We introduce InternAgent-1.5, a unified system designed for end-to-end scientific discovery across computational and empirical domains. The system is built on a structured architecture composed of three coordinated subsystems for generation, verification, and evolution. These subsystems are supported by foundational capabilities for deep research, solution optimization, and long horizon memory. The architecture allows InternAgent-1.5 to operate continuously across extended discovery cycles while maintaining coherent and improving behavior. It also enables the system to coordinate computational modeling and laboratory experimentation within a single unified system. We evaluate InternAgent-1.5 on scientific reasoning benchmarks such as GAIA, HLE, GPQA, and FrontierScience, and the system achieves leading performance that demonstrates strong foundational capabilities. Beyond these benchmarks, we further assess two categories of discovery tasks. In algorithm discovery tasks, InternAgent-1.5 autonomously designs competitive methods for core machine learning problems. In empirical discovery tasks, it executes complete computational or wet lab experiments and produces scientific findings in earth, life, biological, and physical domains. Overall, these results show that InternAgent-1.5 provides a general and scalable framework for autonomous scientific discovery.

cs.AI↗
arXiv2026

MARTI-MARS$^2$: Scaling Multi-Agent Self-Search via Reinforcement Learning for Code Generation

While the complex reasoning capability of Large Language Models (LLMs) has attracted significant attention, single-agent systems often encounter inherent performance ceilings in complex tasks such as code generation. Multi-agent collaboration offers a promising avenue to transcend these boundaries. However, existing frameworks typically rely on prompt-based test-time interactions or multi-role configurations trained with homogeneous parameters, limiting error correction capabilities and strategic diversity. In this paper, we propose a Multi-Agent Reinforced Training and Inference Framework with Self-Search Scaling (MARTI-MARS2), which integrates policy learning with multi-agent tree search by formulating the multi-agent collaborative exploration process as a dynamic and learnable environment. By allowing agents to iteratively explore and refine within the environment, the framework facilitates evolution from parameter-sharing homogeneous multi-role training to heterogeneous multi-agent training, breaking through single-agent capability limits. We also introduce an efficient inference strategy MARTI-MARS2-T+ to fully exploit the scaling potential of multi-agent collaboration at test time. We conduct extensive experiments across varied model scales (8B, 14B, and 32B) on challenging code generation benchmarks. Utilizing two collaborating 32B models, MARTI-MARS2 achieves 77.7%, outperforming strong baselines like GPT-5.1. Furthermore, MARTI-MARS2 reveals a novel scaling law: shifting from single-agent to homogeneous multi-role and ultimately to heterogeneous multi-agent paradigms progressively yields higher RL performance ceilings, robust TTS capabilities, and greater policy diversity, suggesting that policy diversity is critical for scaling intelligence via multi-agent reinforcement learning.

cs.LG↗
arXiv2026

Spurious Strange Correlators in Symmetry-Protected Topological Phases

Strange correlator is a powerful tool widely used in detecting symmetry-protected topological (SPT) phases. However, the result of strange correlator crucially relies on the adoption of the reference state. In this work, we report that an ill-chosen reference state can induce spurious long-range strange correlators in trivial SPT phases, leading to false positives in SPT diagnosis. Focusing on 1D gapped bosonic/spin systems described by matrix product states (MPS), we trace the origin of these spurious signals in trivial SPT phases to the magnitude-degeneracy of the transfer matrix. We systematically classify three distinct mechanisms responsible for such degeneracy, each substantiated by concrete examples: (1) the presence of high-dimensional irreducible representations (abbreviated as \emph{irrep}) in the eigenspace corresponding to the entanglment spectrum (entanglement space); (2) a phase mismatch in symmetry representations between the target and reference states; and (3) long-range order arising from symmetry breaking. Our findings clarify the importance of the choice of proper reference states, providing a guideline to avoid pitfalls and correctly identify SPT order using strange correlators.

cond-mat.str-el↗
arXiv2026

Non-invertible symmetries and mixed anomalies from conserved current construction in (3+1)D twisted $BF$ topological quantum field theories

We develop a current-based construction of generalized symmetries in $(3+1)$D twisted $BF$ topological quantum field theories (TQFTs), focusing on intrinsically non-invertible higher-form symmetries and their mixed anomalies. Starting from the equations of motion, we extract conserved currents and exponentiate the corresponding charges to obtain topological symmetry operators. This gives a step-by-step procedure for constructing symmetry operators, fusion, and anomaly diagnostics directly from the continuum action. We focus on twisted $BF$ theories with gauge group $G=\prod_i \mathbb{Z}_{N_i}$ and an $a\wedge a\wedge b$ twist, where $a$'s and $b$ are 1-form and 2-form gauge fields, respectively. These theories realize non-Abelian $(3+1)$D TQFTs supporting Borromean-rings braiding and describe three-dimensional non-Abelian topological orders in condensed matter. For $G=(\mathbb{Z}_2)^3$, a microscopic realization is given by the $\mathbb{D}_4$ Kitaev quantum double model. Two distinct classes of conserved currents emerge: Type-I currents generate invertible higher-form symmetries with group-like fusion, while Type-II currents require additional consistency conditions on gauge-field configurations, leading to intrinsically non-invertible symmetries dressed by projectors. We compute the fusion algebra: invertible operators admit inverses, while non-invertible ones exhibit multi-channel fusion governed by projector fusion. We diagnose mixed anomalies by coupling multiple conserved currents to background gauge fields, revealing two outcomes: anomalies canceled by anomaly inflow from a higher-dimensional theory, and intrinsic gauging obstructions encoded in the $(3+1)$D continuum theory. Overall, our results provide a unified and practical approach for constructing and characterizing higher-form symmetries, which can be extended to more general TQFTs and topological orders.

cond-mat.str-el↗
arXiv2026

A Unified Study of LoRA Variants: Taxonomy, Review, Codebase, and Empirical Evaluation

Low-Rank Adaptation (LoRA) is a fundamental parameter-efficient fine-tuning method that balances efficiency and performance in large-scale neural networks. However, the proliferation of LoRA variants has led to fragmentation in methodology, theory, code, and evaluation. To this end, this work presents the first unified study of LoRA variants, offering a systematic taxonomy, unified theoretical review, structured codebase, and standardized empirical assessment. First, we categorize LoRA variants along four principal axes: rank, optimization dynamics, initialization, and integration with Mixture-of-Experts. Then, we review their relationships and evolution within a common theoretical framework focused on low-rank update dynamics. Further, we introduce LoRAFactory, a modular codebase that implements variants through a unified interface, supporting plug-and-play experimentation and fine-grained analysis. Last, using this codebase, we conduct a large-scale evaluation across natural language generation, natural language understanding, and image classification tasks, systematically exploring key hyperparameters. Our results uncover several findings, notably: LoRA and its variants exhibit pronounced sensitivity to the choices of learning rate compared to other hyperparameters; moreover, with proper hyperparameter configurations, LoRA consistently matches or surpasses the performance of most of its variants.

cs.LG↗
arXiv2026

scMRDR: A scalable and flexible framework for unpaired single-cell multi-omics data integration

Advances in single-cell sequencing have enabled high-resolution profiling of diverse molecular modalities, while integrating unpaired multi-omics single-cell data remains challenging. Existing approaches either rely on pair information or prior correspondences, or require computing a global pairwise coupling matrix, limiting their scalability and flexibility. In this paper, we introduce a scalable and flexible generative framework called single-cell Multi-omics Regularized Disentangled Representations (scMRDR) for unpaired multi-omics integration. Specifically, we disentangle each cell's latent representations into modality-shared and modality-specific components using a well-designed $β$-VAE architecture, which are augmented with isometric regularization to preserve intra-omics biological heterogeneity, adversarial objective to encourage cross-modal alignment, and masked reconstruction loss strategy to address the issue of missing features across modalities. Our method achieves excellent performance on benchmark datasets in terms of batch correction, modality alignment, and biological signal preservation. Crucially, it scales effectively to large-scale datasets and supports integration of more than two omics, offering a powerful and flexible solution for large-scale multi-omics data integration and downstream biological discovery.

q-bio.QM↗
arXiv2026

LLMRouterBench: A Massive Benchmark and Unified Framework for LLM Routing

Large language model (LLM) routing assigns each query to the most suitable model from an ensemble. We introduce LLMRouterBench, a large-scale benchmark and unified framework for LLM routing. It comprises over 400K instances from 21 datasets and 33 models. Moreover, it provides comprehensive metrics for both performance-oriented routing and performance-cost trade-off routing, and integrates 10 representative routing baselines. Using LLMRouterBench, we systematically re-evaluate the field. While confirming strong model complementarity-the central premise of LLM routing-we find that many routing methods exhibit similar performance under unified evaluation, and several recent approaches, including commercial routers, fail to reliably outperform a simple baseline. Meanwhile, a substantial gap remains to the Oracle, driven primarily by persistent model-recall failures. We further show that backbone embedding models have limited impact, that larger ensembles exhibit diminishing returns compared to careful model curation, and that the benchmark also enables latency-aware analysis. All code and data are available at https://github.com/ynulihao/LLMRouterBench.

cs.AI↗