arXiv subjects

Przemysław Biecek

Publications and source records attributed to Przemysław Biecek.

At least 37 records · Page 2Linked to original sources

arXiv2024

An Experimental Study on the Rashomon Effect of Balancing Methods in Imbalanced Classification

Predictive models may generate biased predictions when classifying imbalanced datasets. This happens when the model favors the majority class, leading to low performance in accurately predicting the minority class. To address this issue, balancing or resampling methods are critical data-centric AI approaches in the modeling process to improve prediction performance. However, there have been debates and questions about the functionality of these methods in recent years. In particular, many candidate models may exhibit very similar predictive performance, called the Rashomon effect, in model selection, and they may even produce different predictions for the same observations. Selecting one of these models without considering the predictive multiplicity -- which is the case of yielding conflicting models' predictions for any sample -- can result in blind selection. In this paper, the impact of balancing methods on predictive multiplicity is examined using the Rashomon effect. It is crucial because the blind model selection in data-centric AI is risky from a set of approximately equally accurate models. This may lead to severe problems in model selection, validation, and explanation. To tackle this matter, we conducted real dataset experiments to observe the impact of balancing methods on predictive multiplicity through the Rashomon effect by using a newly proposed metric obscurity in addition to the existing ones: ambiguity and discrepancy. Our findings showed that balancing methods inflate the predictive multiplicity and yield varying results. To monitor the trade-off between the prediction performance and predictive multiplicity for conducting the modeling process responsibly, we proposed using the extended version of the performance-gain plot when balancing the training data.

cs.LG↗

arXiv2024

Position: Do Not Explain Vision Models Without Context

Does the stethoscope in the picture make the adjacent person a doctor or a patient? This, of course, depends on the contextual relationship of the two objects. If it's obvious, why don't explanation methods for vision models use contextual information? In this paper, we (1) review the most popular methods of explaining computer vision models by pointing out that they do not take into account context information, (2) show examples of failures of popular XAI methods, (3) provide examples of real-world use cases where spatial context plays a significant role, (4) propose new research directions that may lead to better use of context information in explaining computer vision models, (5) argue that a change in approach to explanations is needed from 'where' to 'how'.

cs.CV↗

arXiv2024

Does context matter in digital pathology?

The development of Artificial Intelligence for healthcare is of great importance. Models can sometimes achieve even superior performance to human experts, however, they can reason based on spurious features. This is not acceptable to the experts as it is expected that the models catch the valid patterns in the data following domain expertise. In the work, we analyse whether Deep Learning (DL) models for vision follow the histopathologists' practice so that when diagnosing a part of a lesion, they take into account also the surrounding tissues which serve as context. It turns out that the performance of DL models significantly decreases when the amount of contextual information is limited, therefore contextual information is valuable at prediction time. Moreover, we show that the models sometimes behave in an unstable way as for some images, they change the predictions many times depending on the size of the context. It may suggest that partial contextual information can be misleading.

cs.CV↗

arXiv2024

CNN-based explanation ensembling for dataset, representation and explanations evaluation

Explainable Artificial Intelligence has gained significant attention due to the widespread use of complex deep learning models in high-stake domains such as medicine, finance, and autonomous cars. However, different explanations often present different aspects of the model's behavior. In this research manuscript, we explore the potential of ensembling explanations generated by deep classification models using convolutional model. Through experimentation and analysis, we aim to investigate the implications of combining explanations to uncover a more coherent and reliable patterns of the model's behavior, leading to the possibility of evaluating the representation learned by the model. With our method, we can uncover problems of under-representation of images in a certain class. Moreover, we discuss other side benefits like features' reduction by replacing the original image with its explanations resulting in the removal of some sensitive information. Through the use of carefully selected evaluation metrics from the Quantus library, we demonstrated the method's superior performance in terms of Localisation and Faithfulness, compared to individual explanations.

cs.AI↗

arXiv2024

A comparative analysis of deep learning models for lung segmentation on X-ray images

Robust and highly accurate lung segmentation in X-rays is crucial in medical imaging. This study evaluates deep learning solutions for this task, ranking existing methods and analyzing their performance under diverse image modifications. Out of 61 analyzed papers, only nine offered implementation or pre-trained models, enabling assessment of three prominent methods: Lung VAE, TransResUNet, and CE-Net. The analysis revealed that CE-Net performs best, demonstrating the highest values in dice similarity coefficient and intersection over union metric.

eess.IV↗

arXiv2024

Deep spatial context: when attention-based models meet spatial regression

We propose 'Deep spatial context' (DSCon) method, which serves for investigation of the attention-based vision models using the concept of spatial context. It was inspired by histopathologists, however, the method can be applied to various domains. The DSCon allows for a quantitative measure of the spatial context's role using three Spatial Context Measures: $SCM_{features}$, $SCM_{targets}$, $SCM_{residuals}$ to distinguish whether the spatial context is observable within the features of neighboring regions, their target values (attention scores) or residuals, respectively. It is achieved by integrating spatial regression into the pipeline. The DSCon helps to verify research questions. The experiments reveal that spatial relationships are much bigger in the case of the classification of tumor lesions than normal tissues. Moreover, it turns out that the larger the size of the neighborhood taken into account within spatial regression, the less valuable contextual information is. Furthermore, it is observed that the spatial context measure is the largest when considered within the feature space as opposed to the targets and residuals.

cs.CV↗

arXiv2024

Underestimation of lung regions on chest X-ray segmentation masks assessed by comparison with total lung volume evaluated on computed tomography

Lung mask creation lacks well-defined criteria and standardized guidelines, leading to a high degree of subjectivity between annotators. In this study, we assess the underestimation of lung regions on chest X-ray segmentation masks created according to the current state-of-the-art method, by comparison with total lung volume evaluated on computed tomography (CT). We show, that lung X-ray masks created by following the contours of the heart, mediastinum, and diaphragm significantly underestimate lung regions and exclude substantial portions of the lungs from further assessment, which may result in numerous clinical errors.

eess.IV↗

arXiv2024

NormEnsembleXAI: Unveiling the Strengths and Weaknesses of XAI Ensemble Techniques

This paper presents a comprehensive comparative analysis of explainable artificial intelligence (XAI) ensembling methods. Our research brings three significant contributions. Firstly, we introduce a novel ensembling method, NormEnsembleXAI, that leverages minimum, maximum, and average functions in conjunction with normalization techniques to enhance interpretability. Secondly, we offer insights into the strengths and weaknesses of XAI ensemble methods. Lastly, we provide a library, facilitating the practical implementation of XAI ensembling, thus promoting the adoption of transparent and interpretable deep learning models.

cs.LG↗

arXiv2023

survex: an R package for explaining machine learning survival models

Due to their flexibility and superior performance, machine learning models frequently complement and outperform traditional statistical survival models. However, their widespread adoption is hindered by a lack of user-friendly tools to explain their internal operations and prediction rationales. To tackle this issue, we introduce the survex R package, which provides a cohesive framework for explaining any survival model by applying explainable artificial intelligence techniques. The capabilities of the proposed software encompass understanding and diagnosing survival models, which can lead to their improvement. By revealing insights into the decision-making process, such as variable effects and importances, survex enables the assessment of model reliability and the detection of biases. Thus, transparency and responsibility may be promoted in sensitive areas, such as biomedical research and healthcare applications.

cs.LG↗

arXiv2023

Exploration of the Rashomon Set Assists Trustworthy Explanations for Medical Data

The machine learning modeling process conventionally culminates in selecting a single model that maximizes a selected performance metric. However, this approach leads to abandoning a more profound analysis of slightly inferior models. Particularly in medical and healthcare studies, where the objective extends beyond predictions to valuable insight generation, relying solely on a single model can result in misleading or incomplete conclusions. This problem is particularly pertinent when dealing with a set of models known as $\textit{Rashomon set}$, with performance close to maximum one. Such a set can be numerous and may contain models describing the data in a different way, which calls for comprehensive analysis. This paper introduces a novel process to explore models in the Rashomon set, extending the conventional modeling approach. We propose the $\texttt{Rashomon_DETECT}$ algorithm to detect models with different behavior. It is based on recent developments in the eXplainable Artificial Intelligence (XAI) field. To quantify differences in variable effects among models, we introduce the Profile Disparity Index (PDI) based on measures from functional data analysis. To illustrate the effectiveness of our approach, we showcase its application in predicting survival among hemophagocytic lymphohistiocytosis (HLH) patients - a foundational case study. Additionally, we benchmark our approach on other medical data sets, demonstrating its versatility and utility in various contexts. If differently behaving models are detected in the Rashomon set, their combined analysis leads to more trustworthy conclusions, which is of vital importance for high-stakes applications such as medical applications.

cs.LG↗

arXiv2023

Multi-task learning for classification, segmentation, reconstruction, and detection on chest CT scans

Lung cancer and covid-19 have one of the highest morbidity and mortality rates in the world. For physicians, the identification of lesions is difficult in the early stages of the disease and time-consuming. Therefore, multi-task learning is an approach to extracting important features, such as lesions, from small amounts of medical data because it learns to generalize better. We propose a novel multi-task framework for classification, segmentation, reconstruction, and detection. To the best of our knowledge, we are the first ones who added detection to the multi-task solution. Additionally, we checked the possibility of using two different backbones and different loss functions in the segmentation task.

eess.IV↗

arXiv2023

The Effect of Balancing Methods on Model Behavior in Imbalanced Classification Problems

Imbalanced data poses a significant challenge in classification as model performance is affected by insufficient learning from minority classes. Balancing methods are often used to address this problem. However, such techniques can lead to problems such as overfitting or loss of information. This study addresses a more challenging aspect of balancing methods - their impact on model behavior. To capture these changes, Explainable Artificial Intelligence tools are used to compare models trained on datasets before and after balancing. In addition to the variable importance method, this study uses the partial dependence profile and accumulated local effects techniques. Real and simulated datasets are tested, and an open-source Python package edgaro is developed to facilitate this analysis. The results obtained show significant changes in model behavior due to balancing methods, which can lead to biased models toward a balanced distribution. These findings confirm that balancing analysis should go beyond model performance comparisons to achieve higher reliability of machine learning models. Therefore, we propose a new method performance gain plot for informed data balancing strategy to make an optimal selection of balancing method by analyzing the measure of change in model behavior versus performance gain.

cs.LG↗

arXiv2023

SeFNet: Bridging Tabular Datasets with Semantic Feature Nets

Machine learning applications cover a wide range of predictive tasks in which tabular datasets play a significant role. However, although they often address similar problems, tabular datasets are typically treated as standalone tasks. The possibilities of using previously solved problems are limited due to the lack of structured contextual information about their features and the lack of understanding of the relations between them. To overcome this limitation, we propose a new approach called Semantic Feature Net (SeFNet), capturing the semantic meaning of the analyzed tabular features. By leveraging existing ontologies and domain knowledge, SeFNet opens up new opportunities for sharing insights between diverse predictive tasks. One such opportunity is the Dataset Ontology-based Semantic Similarity (DOSS) measure, which quantifies the similarity between datasets using relations across their features. In this paper, we present an example of SeFNet prepared for a collection of predictive tasks in healthcare, with the features' relations derived from the SNOMED-CT ontology. The proposed SeFNet framework and the accompanying DOSS measure address the issue of limited contextual information in tabular datasets. By incorporating domain knowledge and establishing semantic relations between features, we enhance the potential for meta-learning and enable valuable insights to be shared across different predictive tasks.

cs.LG↗

arXiv2023

Prevention is better than cure: a case study of the abnormalities detection in the chest

Prevention is better than cure. This old truth applies not only to the prevention of diseases but also to the prevention of issues with AI models used in medicine. The source of malfunctioning of predictive models often lies not in the training process but reaches the data acquisition phase or design of the experiment phase. In this paper, we analyze in detail a single use case - a Kaggle competition related to the detection of abnormalities in X-ray lung images. We demonstrate how a series of simple tests for data imbalance exposes faults in the data acquisition and annotation process. Complex models are able to learn such artifacts and it is difficult to remove this bias during or after the training. Errors made at the data collection stage make it difficult to validate the model correctly. Based on this use case, we show how to monitor data and model balance (fairness) throughout the life cycle of a predictive model, from data acquisition to parity analysis of model scores.

cs.AI↗

arXiv2023

Towards Evaluating Explanations of Vision Transformers for Medical Imaging

As deep learning models increasingly find applications in critical domains such as medical imaging, the need for transparent and trustworthy decision-making becomes paramount. Many explainability methods provide insights into how these models make predictions by attributing importance to input features. As Vision Transformer (ViT) becomes a promising alternative to convolutional neural networks for image classification, its interpretability remains an open research question. This paper investigates the performance of various interpretation methods on a ViT applied to classify chest X-ray images. We introduce the notion of evaluating faithfulness, sensitivity, and complexity of ViT explanations. The obtained results indicate that Layerwise relevance propagation for transformers outperforms Local interpretable model-agnostic explanations and Attention visualization, providing a more accurate and reliable representation of what a ViT has actually learned. Our findings provide insights into the applicability of ViT explanations in medical imaging and highlight the importance of using appropriate evaluation criteria for comparing them.

cs.CV↗

arXiv2023

HADES: Homologous Automated Document Exploration and Summarization

This paper introduces HADES, a novel tool for automatic comparative documents with similar structures. HADES is designed to streamline the work of professionals dealing with large volumes of documents, such as policy documents, legal acts, and scientific papers. The tool employs a multi-step pipeline that begins with processing PDF documents using topic modeling, summarization, and analysis of the most important words for each topic. The process concludes with an interactive web app with visualizations that facilitate the comparison of the documents. HADES has the potential to significantly improve the productivity of professionals dealing with high volumes of documents, reducing the time and effort required to complete tasks related to comparative document analysis. Our package is publically available on GitHub.

cs.CL↗

arXiv2022

Climate Policy Tracker: Pipeline for automated analysis of public climate policies

The number of standardized policy documents regarding climate policy and their publication frequency is significantly increasing. The documents are long and tedious for manual analysis, especially for policy experts, lawmakers, and citizens who lack access or domain expertise to utilize data analytics tools. Potential consequences of such a situation include reduced citizen governance and involvement in climate policies and an overall surge in analytics costs, rendering less accessibility for the public. In this work, we use a Latent Dirichlet Allocation-based pipeline for the automatic summarization and analysis of 10-years of national energy and climate plans (NECPs) for the period from 2021 to 2030, established by 27 Member States of the European Union. We focus on analyzing policy framing, the language used to describe specific issues, to detect essential nuances in the way governments frame their climate policies and achieve climate goals. The methods leverage topic modeling and clustering for the comparative analysis of policy documents across different countries. It allows for easier integration in potential user-friendly applications for the development of theories and processes of climate policy. This would further lead to better citizen governance and engagement over climate policies and public policy research.

cs.CL↗

arXiv2022

Interpretable Meta-Measure for Model Performance

Benchmarks for the evaluation of model performance play an important role in machine learning. However, there is no established way to describe and create new benchmarks. What is more, the most common benchmarks use performance measures that share several limitations. For example, the difference in performance for two models has no probabilistic interpretation, there is no reference point to indicate whether they represent a significant improvement, and it makes no sense to compare such differences between data sets. We introduce a new meta-score assessment named Elo-based Predictive Power (EPP) that is built on top of other performance measures and allows for interpretable comparisons of models. The differences in EPP scores have a probabilistic interpretation and can be directly compared between data sets, furthermore, the logistic regression-based design allows for an assessment of ranking fitness based on a deviance statistic. We prove the mathematical properties of EPP and support them with empirical results of a large scale benchmark on 30 classification data sets and a real-world benchmark for visual data. Additionally, we propose a Unified Benchmark Ontology that is used to give a uniform description of benchmarks.

cs.LG↗