arXiv subjects

Sara A. Solla

Publications and source records attributed to Sara A. Solla.

7 recordsLinked to original sources

arXiv2026

From Signals to Trajectories: A Primer on Low-Dimensional Dynamics in Human EEG and MEG

Neural activity unfolds not as a set of independent signals, but as a coordinated dynamical process that can be described as a point moving through a high-dimensional state space. This perspective has contributed substantially to recent developments in systems neuroscience, especially through studies of directly recorded neuronal population activity, but remains comparatively underused in non-invasive human recordings such as EEG and MEG. In this primer, we present a neural trajectory analysis based on Principal Component Analysis (PCA) as an accessible route into extending the concepts of neural trajectories in state space to human electrophysiology. We explain how EEG/MEG activity can be organized into neural state representations, projected onto axes organized by decreasing covariance, truncated into low-dimensional representations, and visualized as trajectories that capture how distributed activity evolves over time. We show how trajectory geometry can be used to compare conditions and relate neural dynamics to behavior or clinical outcomes. An example of EEG motor execution and imagery, accompanied by a tutorial notebook, illustrates the workflow from conventional EEG summaries to trajectory-based analysis. We also clarify the limits of PCA, including its linear, variance-driven nature, and discuss EEG/MEG-specific challenges such as spatial mixing, preprocessing sensitivity, validation, and overinterpretation. Finally, we situate PCA within a broader family of state-space methods. By making neural trajectories practical and interpretable, this primer offers a guide for bringing the conceptual framework of population-level dynamics into mainstream human cognitive neuroscience.

q-bio.NC↗

arXiv2024

Direct and retrograde signal propagation in unidirectionally coupled Wilson-Cowan oscillators

Certain biological systems exhibit both direct and retrograde propagating wave signals, despite unidirectional neural coupling. However, there is no model to explain this. Therefore, the underlying physics of reversing the signal's direction for one-way coupling remains unclear. Here, we resolve this issue using a Wilson-Cowan oscillators network. By analyzing the limit cycle period of various coupling configurations, we determine that intrinsic frequency differences among oscillators control wave directionality.

physics.bio-ph↗

arXiv2022

Macroscopic Dynamics of Neural Networks with Heterogeneous Spiking Thresholds

Mean-field theory links the physiological properties of individual neurons to the emergent dynamics of neural population activity. These models provide an essential tool for studying brain function at different scales; however, for their application to neural populations on large scale, they need to account for differences between distinct neuron types. The Izhikevich single neuron model can account for a broad range of different neuron types and spiking patterns, thus rendering it an optimal candidate for a mean-field theoretic treatment of brain dynamics in heterogeneous networks. Here, we derive the mean-field equations for networks of all-to-all coupled Izhikevich neurons with heterogeneous spiking thresholds. Using methods from bifurcation theory, we examine the conditions under which the mean-field theory accurately predicts the dynamics of the Izhikevich neuron network. To this end, we focus on three important features of the Izhikevich model that are subject here to simplifying assumptions: (i) spike-frequency adaptation, (ii) the spike reset conditions, and (iii) the distribution of single-cell spike thresholds across neurons. Our results indicate that, while the mean-field model is not an exact model of the Izhikevich network dynamics, it faithfully captures its different dynamic regimes and phase transitions. We thus present a mean-field model that can represent different neuron types and spiking dynamics. The model is comprised of biophysical state variables and parameters, incorporates realistic spike resetting conditions, and accounts for heterogeneity in neural spiking thresholds. These features allow for a broad applicability of the model as well as for a direct comparison to experimental data.

q-bio.NC↗

arXiv2022

Effects of Neural Heterogeneity on Spiking Neural Network Dynamics

The brain is composed of complex networks of interacting neurons that express considerable heterogeneity in their physiology and spiking characteristics. How does neural heterogeneity affect macroscopic neural dynamics and how does it contribute to neurodynamic functions? In this letter, we address these questions by studying the macroscopic dynamics of networks of heterogeneous Izhikevich neurons. We derive mean-field equations for these networks and examine how heterogeneity in the spiking thresholds of Izhikevich neurons affects the emergent macroscopic dynamics. Our results suggest that the level of heterogeneity of inhibitory populations controls resonance and hysteresis properties of systems of coupled excitatory and inhibitory neurons. Neural heterogeneity may thus serve as a means to control the dynamic repertoire of mesoscopic brain circuits.

q-bio.NC↗

arXiv2019

Adversarial Domain Adaptation for Stable Brain-Machine Interfaces

Brain-Machine Interfaces (BMIs) have recently emerged as a clinically viable option to restore voluntary movements after paralysis. These devices are based on the ability to extract information about movement intent from neural signals recorded using multi-electrode arrays chronically implanted in the motor cortices of the brain. However, the inherent loss and turnover of recorded neurons requires repeated recalibrations of the interface, which can potentially alter the day-to-day user experience. The resulting need for continued user adaptation interferes with the natural, subconscious use of the BMI. Here, we introduce a new computational approach that decodes movement intent from a low-dimensional latent representation of the neural data. We implement various domain adaptation methods to stabilize the interface over significantly long times. This includes Canonical Correlation Analysis used to align the latent variables across days; this method requires prior point-to-point correspondence of the time series across domains. Alternatively, we match the empirical probability distributions of the latent variables across days through the minimization of their Kullback-Leibler divergence. These two methods provide a significant and comparable improvement in the performance of the interface. However, implementation of an Adversarial Domain Adaptation Network trained to match the empirical probability distribution of the residuals of the reconstructed neural signals outperforms the two methods based on latent variables, while requiring remarkably few data points to solve the domain adaptation problem.

cs.LG↗

arXiv2007

Many Attractors, Long Chaotic Transients, and Failure in Small-World Networks of Excitable Neurons

We study the dynamical states that emerge in a small-world network of recurrently coupled excitable neurons through both numerical and analytical methods. These dynamics depend in large part on the fraction of long-range connections or `short-cuts' and the delay in the neuronal interactions. Persistent activity arises for a small fraction of `short-cuts', while a transition to failure occurs at a critical value of the `short-cut' density. The persistent activity consists of multi-stable periodic attractors, the number of which is at least on the order of the number of neurons in the network. For long enough delays, network activity at high `short-cut' densities is shown to exhibit exceedingly long chaotic transients whose failure-times averaged over many network configurations follow a stretched exponential. We show how this functional form arises in the ensemble-averaged activity if each network realization has a characteristic failure-time which is exponentially distributed.

q-bio.NC↗

arXiv2003

Self-sustained activity in a small-world network of excitable neurons

We study the dynamics of excitable integrate-and-fire neurons in a small-world network. At low densities $p$ of directed random connections, a localized transient stimulus results in either self-sustained persistent activity or in a brief transient followed by failure. Averages over the quenched ensemble reveal that the probability of failure changes from 0 to 1 over a narrow range in $p$; this failure transition can be described analytically through an extension of an existing mean-field result. Exceedingly long transients emerge at higher densities $p$; their activity patterns are disordered, in contrast to the mostly periodic persistent patterns observed at low $p$. The times at which such patterns die out are consistent with a stretched-exponential distribution, which depends sensitively on the propagation velocity of the excitation.

nlin.PS↗