arXiv subjects

Sarah Almeida Carneiro

Publications and source records attributed to Sarah Almeida Carneiro.

7 recordsLinked to original sources

arXiv2026

CARTE: A Benchmark for Mapping Language Model Knowledge Across France

We introduce CARTE (Culturally Anchored Regional-Territorial Evaluation), a multiple-choice benchmark for evaluating the ability of large language models (LLMs) to discriminate fine grained, geographically grounded and regionally differentiated knowledge within France. While prior benchmarks focus on national-level cultural understanding, they largely overlook intra-country variation and the need to distinguish between closely related regional contexts. CARTE addresses this gap by introducing 3,132 questions spanning the 13 metropolitan regions of France and covering 12 thematic domains, including culture, language, demographics, economy, environment, and mobility. Questions underwent four-stage validation: human review, LLM-as-a-judge, model-based difficulty calibration, and a second human review. We further introduce CARTE-LV, a subset targeting Linguistic Variation across French regions, enabling focused evaluation of language-related differences. We evaluate 32 open-weight LLMs of 1B to 30B parameters and three frontier API models across zero-, one-, and three-shot settings. Our experiments reveal performance disparities across regions and model scales, suggesting systematic gaps in pretraining coverage and limited robustness to intra-national variation.

cs.CL↗

arXiv2026

Every Wrong Answer Counts: Option-Level Psychometrics for LLM Multiple-Choice Benchmarks

Most multiple-choice question (MCQ) benchmarks evaluate Large Language Models (LLMs) only by whether they select the correct answers. This binary scoring treats all incorrect responses alike, even though an LLM's preferences among incorrect options may contain systematic and useful information about its behavior and ability. We introduce the LLM Nominal Response Model (LLM-NRM), an option-aware psychometric framework that models the full distribution over answer choices to jointly estimate LLM ability and option-level item characteristics, while separating model-specific response calibration sharpness, positional preference, and difficulty-dependent fallback behavior. Across 189 LLMs and 31,554 items from 14 benchmarks, LLM-NRM predicts held-out LLM-item interactions more accurately than binary Item Response models and conventional nominal-response baselines, and its ability estimates achieve the strongest Spearman correlation of 0.920 with the external human-preference Arena.ai Elo leaderboard. Distractor identity contributes +101% additional Fisher Information per item beyond correctness, and incorrect responses alone recover full-information ability estimates with Spearman 0.943. The learned item parameters also enable efficient benchmarking, where 41 selected items preserve the full-bank ranking with Kendall's correlation 0.85, corresponding to a 770 times reduction. In conclusion, we show that incorrect answers carry distinct and useful measurement information rather than representing equivalent mistakes.

cs.CL↗

arXiv2026

The Masked Advantage: Uncovering Local-Language Access to Cultural Knowledge in LLMs

Large language models are increasingly used to answer culturally grounded questions across languages, yet it remains unclear whether local cultural knowledge is better accessed through English or the local language. Existing evaluations face two key limitations: many rely on parallel template-based questions that may not reflect how cultural knowledge naturally appears, and raw accuracy conflates general language proficiency with language-conditioned knowledge access. We address these issues with a controlled framework built on real-world cultural questions collected from regional benchmarks and local sources. By crossing question type (culture-agnostic vs. culture-specific) with query language (English vs. local language), and estimating ability with a shared 1PL item response theory model, we separate proficiency from localized knowledge access. Across 13 locales and roughly 80 models, we find a consistent English advantage on culture-agnostic questions, indicating stronger English proficiency. However, after accounting for this proficiency gap, local languages show a positive knowledge-access advantage in nearly all locale-model settings. This advantage is often masked in raw accuracy but becomes more visible for frontier, regionally aligned, or language-adapted models. Our results suggest that weaker local-language performance does not necessarily imply weaker cultural knowledge; rather, local cultural knowledge may be more accessible through the local language but hidden by limited language proficiency.

cs.CL↗

arXiv2026

PPI2Text: Captioning Protein-Protein Interactions with Coordinate-Aligned Pair-Map Decoding

Protein-protein interaction (PPI) modeling has been widely studied as a binary or multi-label classification task. While emerging multimodal large language models (LLMs) can now describe single proteins, they remain unable to generate free-form descriptions of interactions between protein pairs. Moving beyond controlled vocabulary annotations, we propose to model PPI using free-text description, enabling richer expressiveness, improved interpretability, and better integration with literature knowledge base. We present PPI2Text, a multimodal LLM for free-form PPI captioning from amino acid sequences, that encodes each protein using ESM3 encoder, constructs a pair map from the two representations to capture interactions across all residue pairs, and autoregressively generates descriptions using a Qwen3 language decoder. We further introduce PaCo-RoPE, a coordinate-aligned positional encoding that aligns each axis of the pair grid with the residue positions of the corresponding protein. In addition, we release PPI2Text-Dataset, a 351k-pair corpus of free-form PPI descriptions aggregated from ten curated biological databases and further synthesized with Gemini under evidence-tiered prompting. PPI2Text consistently outperforms strong baselines across multiple ablation settings and evaluation protocols. It not only achieves higher scores on linguistic metrics against synthesized references, but also excels on factuality metrics, where an LLM-based judge evaluates outputs against raw biological evidence.

cs.CE↗

arXiv2025

Prot2Text-V2: Protein Function Prediction with Multimodal Contrastive Alignment

Predicting protein function from sequence is a central challenge in computational biology. While existing methods rely heavily on structured ontologies or similarity-based techniques, they often lack the flexibility to express structure-free functional descriptions and novel biological functions. In this work, we introduce Prot2Text-V2, a novel multimodal sequence-to-text model that generates free-form natural language descriptions of protein function directly from amino acid sequences. Our method combines a protein language model as a sequence encoder (ESM-3B) and a decoder-only language model (LLaMA-3.1-8B-Instruct) through a lightweight nonlinear modality projector. A key innovation is our Hybrid Sequence-level Contrastive Alignment Learning (H-SCALE), which improves cross-modal learning by matching mean- and std-pooled protein embeddings with text representations via contrastive loss. After the alignment phase, we apply instruction-based fine-tuning using LoRA on the decoder to teach the model how to generate accurate protein function descriptions conditioned on the protein sequence. We train Prot2Text-V2 on about 250K curated entries from SwissProt and evaluate it under low-homology conditions, where test sequences have low similarity with training samples. Prot2Text-V2 consistently outperforms traditional and LLM-based baselines across various metrics.

cs.CE↗

arXiv2024

Clustering Dynamics for Improved Speed Prediction Deriving from Topographical GPS Registrations

A persistent challenge in the field of Intelligent Transportation Systems is to extract accurate traffic insights from geographic regions with scarce or no data coverage. To this end, we propose solutions for speed prediction using sparse GPS data points and their associated topographical and road design features. Our goal is to investigate whether we can use similarities in the terrain and infrastructure to train a machine learning model that can predict speed in regions where we lack transportation data. For this we create a Temporally Orientated Speed Dictionary Centered on Topographically Clustered Roads, which helps us to provide speed correlations to selected feature configurations. Our results show qualitative and quantitative improvement over new and standard regression methods. The presented framework provides a fresh perspective on devising strategies for missing data traffic analysis.

cs.AI↗

arXiv2023

SWMLP: Shared Weight Multilayer Perceptron for Car Trajectory Speed Prediction using Road Topographical Features

Although traffic is one of the massively collected data, it is often only available for specific regions. One concern is that, although there are studies that give good results for these data, the data from these regions may not be sufficiently representative to describe all the traffic patterns in the rest of the world. In quest of addressing this concern, we propose a speed prediction method that is independent of large historical speed data. To predict a vehicle's speed, we use the trajectory road topographical features to fit a Shared Weight Multilayer Perceptron learning model. Our results show significant improvement, both qualitative and quantitative, over standard regression analysis. Moreover, the proposed framework sheds new light on the way to design new approaches for traffic analysis.

cs.LG↗