arXiv subjects

Sean Doyle

Publications and source records attributed to Sean Doyle.

5 recordsLinked to original sources

arXiv2021

Deploying clinical machine learning? Consider the following...

Despite the intense attention and considerable investment into clinical machine learning research, relatively few applications have been deployed at a large-scale in a real-world clinical environment. While research is important in advancing the state-of-the-art, translation is equally important in bringing these techniques and technologies into a position to ultimately impact healthcare. We believe a lack of appreciation for several considerations are a major cause for this discrepancy between expectation and reality. To better characterize a holistic perspective among researchers and practitioners, we survey several practitioners with commercial experience in developing CML for clinical deployment. Using these insights, we identify several main categories of challenges in order to better design and develop clinical machine learning applications.

cs.LG↗

arXiv2019

4D CNN for semantic segmentation of cardiac volumetric sequences

We propose a 4D convolutional neural network (CNN) for the segmentation of retrospective ECG-gated cardiac CT, a series of single-channel volumetric data over time. While only a small subset of volumes in the temporal sequence is annotated, we define a sparse loss function on available labels to allow the network to leverage unlabeled images during training and generate a fully segmented sequence. We investigate the accuracy of the proposed 4D network to predict temporally consistent segmentations and compare with traditional 3D segmentation approaches. We demonstrate the feasibility of the 4D CNN and establish its performance on cardiac 4D CCTA.

eess.IV↗

arXiv2018

PDFSense: Mapping the sensitivity of hadronic experiments to nucleon structure

Recent high precision experimental data from a variety of hadronic processes opens new opportunities for determination of the collinear parton distribution functions (PDFs) of the proton. In fact, the wealth of information from experiments such as the Large Hadron Collider (LHC) and others, makes it difficult to quickly assess the impact on the PDFs, short of performing computationally expensive global fits. As an alternative, we explore new methods for quantifying the potential impact of experimental data on the extraction of proton PDFs. Our approach relies crucially on the correlation between theory-data residuals and the PDFs themselves, as well as on a newly defined quantity --- the sensitivity --- which represents an extension of the correlation and reflects both PDF-driven and experimental uncertainties. This approach is realized in a new, publicly available analysis package PDFSense, which operates with these statistical measures to identify particularly sensitive experiments, weigh their relative or potential impact on PDFs, and visualize their detailed distributions in a space of the parton momentum fraction x and factorization scale \mu. This tool offers a new means of understanding the influence of individual measurements in existing fits, as well as a predictive device for directing future fits toward the highest impact data and assumptions.

hep-ph↗

arXiv2018

DeepSPINE: Automated Lumbar Vertebral Segmentation, Disc-level Designation, and Spinal Stenosis Grading Using Deep Learning

The high prevalence of spinal stenosis results in a large volume of MRI imaging, yet interpretation can be time-consuming with high inter-reader variability even among the most specialized radiologists. In this paper, we develop an efficient methodology to leverage the subject-matter-expertise stored in large-scale archival reporting and image data for a deep-learning approach to fully-automated lumbar spinal stenosis grading. Specifically, we introduce three major contributions: (1) a natural-language-processing scheme to extract level-by-level ground-truth labels from free-text radiology reports for the various types and grades of spinal stenosis (2) accurate vertebral segmentation and disc-level localization using a U-Net architecture combined with a spine-curve fitting method, and (3) a multi-input, multi-task, and multi-class convolutional neural network to perform central canal and foraminal stenosis grading on both axial and sagittal imaging series inputs with the extracted report-derived labels applied to corresponding imaging level segments. This study uses a large dataset of 22796 disc-levels extracted from 4075 patients. We achieve state-of-the-art performance on lumbar spinal stenosis classification and expect the technique will increase both radiology workflow efficiency and the perceived value of radiology reports for referring clinicians and patients.

cs.CV↗

arXiv2018

Mapping the sensitivity of hadronic experiments to nucleon structure

Determinations of the proton's collinear parton distribution functions (PDFs) are emerging with growing precision due to increased experimental activity at facilities like the Large Hadron Collider. While this copious information is valuable, the speed at which it is released makes it difficult to quickly assess its impact on the PDFs, short of performing computationally expensive global fits. As an alternative, we explore new methods for quantifying the potential impact of experimental data on the extraction of proton PDFs. Our approach relies crucially on the Hessian correlation between theory-data residuals and the PDFs themselves, as well as on a newly defined quantity --- the sensitivity --- which represents an extension of the correlation and reflects both PDF-driven and experimental uncertainties. This approach is realized in a new, publicly available analysis package PDFSense, which operates with these statistical measures to identify particularly sensitive experiments, weigh their relative or potential impact on PDFs, and visualize their detailed distributions in a space of the parton momentum fraction $x$ and factorization scale $\mu$. This tool offers a new means of understanding the influence of individual measurements in existing fits, as well as a predictive device for directing future fits toward the highest impact data and assumptions. Along the way, many new physics insights can be gained or reinforced. As one of many examples, PDFSense is employed to rank the projected impact of new LHC measurements in jet, vector boson, and $t\bar{t}$ production and leads us to the conclusion that inclusive jet production at the LHC has a potential for playing an indispensable role in future PDF fits. These conclusions are independently verified by preliminarily fitting this experimental information and investigating the constraints they supply using the Lagrange multiplier technique.

hep-ph↗