arXiv subjects

Sunjae Kwon

Publications and source records attributed to Sunjae Kwon.

23 records · Page 2Linked to original sources

arXiv2022

An Automatic SOAP Classification System Using Weakly Supervision And Transfer Learning

In this paper, we introduce a comprehensive framework for developing a machine learning-based SOAP (Subjective, Objective, Assessment, and Plan) classification system without manually SOAP annotated training data or with less manually SOAP annotated training data. The system is composed of the following two parts: 1) Data construction, 2) A neural network-based SOAP classifier, and 3) Transfer learning framework. In data construction, since a manual construction of a large size training dataset is expensive, we propose a rule-based weak labeling method utilizing the structured information of an EHR note. Then, we present a SOAP classifier composed of a pre-trained language model and bi-directional long-short term memory with conditional random field (Bi-LSTM-CRF). Finally, we propose a transfer learning framework that re-uses the trained parameters of the SOAP classifier trained with the weakly labeled dataset for datasets collected from another hospital. The proposed weakly label-based learning model successfully performed SOAP classification (89.99 F1-score) on the notes collected from the target hospital. Otherwise, in the notes collected from other hospitals and departments, the performance dramatically decreased. Meanwhile, we verified that the transfer learning framework is advantageous for inter-hospital adaptation of the model increasing the models' performance in every cases. In particular, the transfer learning approach was more efficient when the manually annotated data size was smaller. We showed that SOAP classification models trained with our weakly labeling algorithm can perform SOAP classification without manually annotated data on the EHR notes from the same hospital. The transfer learning framework helps SOAP classification model's inter-hospital migration with a minimal size of the manually annotated dataset.

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arXiv2022

MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score

This paper proposes a new natural language processing (NLP) application for identifying medical jargon terms potentially difficult for patients to comprehend from electronic health record (EHR) notes. We first present a novel and publicly available dataset with expert-annotated medical jargon terms from 18K+ EHR note sentences ($MedJ$). Then, we introduce a novel medical jargon extraction ($MedJEx$) model which has been shown to outperform existing state-of-the-art NLP models. First, MedJEx improved the overall performance when it was trained on an auxiliary Wikipedia hyperlink span dataset, where hyperlink spans provide additional Wikipedia articles to explain the spans (or terms), and then fine-tuned on the annotated MedJ data. Secondly, we found that a contextualized masked language model score was beneficial for detecting domain-specific unfamiliar jargon terms. Moreover, our results show that training on the auxiliary Wikipedia hyperlink span datasets improved six out of eight biomedical named entity recognition benchmark datasets. Both MedJ and MedJEx are publicly available.

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arXiv2022

Why Do Neural Language Models Still Need Commonsense Knowledge to Handle Semantic Variations in Question Answering?

Many contextualized word representations are now learned by intricate neural network models, such as masked neural language models (MNLMs) which are made up of huge neural network structures and trained to restore the masked text. Such representations demonstrate superhuman performance in some reading comprehension (RC) tasks which extract a proper answer in the context given a question. However, identifying the detailed knowledge trained in MNLMs is challenging owing to numerous and intermingled model parameters. This paper provides new insights and empirical analyses on commonsense knowledge included in pretrained MNLMs. First, we use a diagnostic test that evaluates whether commonsense knowledge is properly trained in MNLMs. We observe that a large proportion of commonsense knowledge is not appropriately trained in MNLMs and MNLMs do not often understand the semantic meaning of relations accurately. In addition, we find that the MNLM-based RC models are still vulnerable to semantic variations that require commonsense knowledge. Finally, we discover the fundamental reason why some knowledge is not trained. We further suggest that utilizing an external commonsense knowledge repository can be an effective solution. We exemplify the possibility to overcome the limitations of the MNLM-based RC models by enriching text with the required knowledge from an external commonsense knowledge repository in controlled experiments.

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arXiv2020

Word Sense Disambiguation using Knowledge-based Word Similarity

In natural language processing, word-sense disambiguation (WSD) is an open problem concerned with identifying the correct sense of words in a particular context. To address this problem, we introduce a novel knowledge-based WSD system. We suggest the adoption of two methods in our system. First, we suggest a novel method to encode the word vector representation by considering the graphical semantic relationships from the lexical knowledge-base. Second, we propose a method for extracting the contextual words from the text for analyzing an ambiguous word based on the similarity of word vector representations. To validate the effectiveness of our WSD system, we conducted experiments on the five benchmark English WSD corpora (Senseval-02, Senseval-03, SemEval-07, SemEval-13, and SemEval-15). The obtained results demonstrated that the suggested methods significantly enhanced the WSD performance. Furthermore, our system outperformed the existing knowledge-based WSD systems and showed a performance comparable to that of the state-of-the-art supervised WSD systems.

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arXiv2019

Why Do Masked Neural Language Models Still Need Common Sense Knowledge?

Currently, contextualized word representations are learned by intricate neural network models, such as masked neural language models (MNLMs). The new representations significantly enhanced the performance in automated question answering by reading paragraphs. However, identifying the detailed knowledge trained in the MNLMs is difficult owing to numerous and intermingled parameters. This paper provides empirical but insightful analyses on the pretrained MNLMs with respect to common sense knowledge. First, we propose a test that measures what types of common sense knowledge do pretrained MNLMs understand. From the test, we observed that MNLMs partially understand various types of common sense knowledge but do not accurately understand the semantic meaning of relations. In addition, based on the difficulty of the question-answering task problems, we observed that pretrained MLM-based models are still vulnerable to problems that require common sense knowledge. We also experimentally demonstrated that we can elevate existing MNLM-based models by combining knowledge from an external common sense repository.

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