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Tao Tang

Publications and source records attributed to Tao Tang.

At least 19 recordsLinked to original sources

ProMeta: Few-shot PROTAC-targeted degradation prediction across E3 ligases

Proteolysis-targeting chimeras (PROTACs) have emerged as a transformative therapeutic strategy that selectively degrades historically ''undruggable'' targets via the ubiquitin-proteasome system. Despite growing efforts to develop computational predictors of PROTAC degradation activity, existing supervised approaches remain severely challenged by data scarcity and imbalance across E3 ligases, limiting their ability to generalize beyond well-studied ligase contexts. In practice, labeled data are heavily concentrated on a few ligases (e.g., CRBN and VHL), while the majority of E3 ligases remain underexplored yet are critical for expanding the design space of targeted degraders. Developing methods that enable robust cross-ligase generalization with minimal labeled data is therefore essential for improving the practical utility of computational PROTAC discovery. We reformulate PROTAC degradation activity prediction across E3 ligases as a few-shot meta-learning problem and present ProMeta, a prototype-based graph neural network trained through episodic meta-learning on source-E3 tasks and evaluated on held-out target-E3 tasks through support-conditioned inference. ProMeta performs inference without updating the encoder by dynamically estimating class prototypes from minimal target-ligase support samples. On the CRBN-to-VHL benchmark, ProMeta achieves AUROC values of 0.796 under K=2, Q=3 and 0.883 under K=2, Q=5, improving by 19.9% and 6.8%, respectively, over the corresponding supervised GNN baseline. Reverse VHL-to-CRBN transfer under the same protocol yielded AUROC values of 0.702 (K=2, Q=3) and 0.821 (K=2, Q=5), confirming bidirectional applicability while revealing direction and data-regime dependence. Together, these results support ProMeta as a practical framework for cross-ligase few-shot prediction under the evaluated support/query protocols.

cs.LG

AtomicVLA: Unlocking the Potential of Atomic Skill Learning in Robots

Recent advances in Visual-Language-Action (VLA) models have shown promising potential for robotic manipulation tasks. However, real-world robotic tasks often involve long-horizon, multi-step problem-solving and require generalization for continual skill acquisition, extending beyond single actions or skills. These challenges present significant barriers for existing VLA models, which use monolithic action decoders trained on aggregated data, resulting in poor scalability. To address these challenges, we propose AtomicVLA, a unified planning-and-execution framework that jointly generates task-level plans, atomic skill abstractions, and fine-grained actions. AtomicVLA constructs a scalable atomic skill library through a Skill-Guided Mixture-of-Experts (SG-MoE), where each expert specializes in mastering generic yet precise atomic skills. Furthermore, we introduce a flexible routing encoder that automatically assigns dedicated atomic experts to new skills, enabling continual learning. We validate our approach through extensive experiments. In simulation, AtomicVLA outperforms $π_{0}$ by 2.4\% on LIBERO, 10\% on LIBERO-LONG, and outperforms $π_{0}$ and $π_{0.5}$ by 0.22 and 0.25 in average task length on CALVIN. Additionally, our AtomicVLA consistently surpasses baselines by 18.3\% and 21\% in real-world long-horizon tasks and continual learning. These results highlight the effectiveness of atomic skill abstraction and dynamic expert composition for long-horizon and lifelong robotic tasks. The project page is \href{https://zhanglk9.github.io/atomicvla-web/}{here}.

cs.RO

A semi-generating function approach to the stability of implicit-explicit multistep methods for nonlinear parabolic equations

The rigorous stability analysis of high-order implicit-explicit linear multistep (IELM) methods for nonlinear parabolic equations by using discrete energy arguments is a long standing open issue due to their non-A-stability property. A novel semi-generating function approach combined with a global discrete energy analysis is suggested for the stability and convergence of general IELM methods in solving nonlinear parabolic equations. Inspired from the Grenander-Szegő theorem for Toeplitz matrices, the semi-generating function approach is used to handle the three groups of discrete coefficients via three complex polynomials on the unit circle. A unified theoretical framework is then presented to establish the unconditional stability of IELM methods if the minimum eigenvalue of composite convolution kernels for the implicit part is properly large and the spectral norm bound of composite convolution kernels for the explicit part is properly small. An indicator, called implicit-explicit controllability intensity, is then introduced to evaluate the degree of controllability of the implicit part over the explicit part. Some of the existing IELM methods, up to fifth-order time accuracy, are revisited and compared by computing the associated implicit-explicit controllability intensities such that one can choose an IELM method or proper parameter to maintain the unconditional stability for a specific nonlinear parabolic model. We also propose a new parameterized class of IELM methods, up to the ninth-order time accuracy, which satisfy the a priori settings of our theory and have a large value of the implicit-explicit controllability intensity by choosing a proper parameter so that they would be well suited for a wide class of nonlinear parabolic problems.

math.NA

Intend, Reflect, Refine: An Adaptive Multimodal Reflection Framework for Autonomous Driving

Recent Vision-Language-Action (VLA) models have advanced end-to-end autonomous driving by incorporating reasoning for better interpretability and planning quality. However, most existing approaches directly generate the final trajectory without explicitly examining its future consequences, which limits their reliability in complex and dynamic environments. To address this limitation, we propose IRR-Drive (Intend, Reflect, Refine), an adaptive multimodal reflection framework for autonomous driving. Specifically, to tightly couple high-level reasoning with physical constraints, IRR-Drive first generates a preliminary textual intention and anticipates potential interactions by predicting future semantic bird's-eye view (BEV) representations. This dual-modality (Text + BEV) reflection space explicitly models anticipated scene evolution, enabling the model to rigorously self-correct and refine its initial intent before generating the final trajectory. Furthermore, to balance planning performance and computational efficiency, we construct reflection-oriented training data and design an adaptive reflection reward, enabling the model to adaptively select its reasoning mode according to scene complexity. Instead of using reasoning primarily as an auxiliary interpretation, IRR-Drive directly integrates an adaptive reflection mechanism into the planning framework, enabling grounded, decision-aware trajectory correction that is driven by scene complexity. Our method achieves state-of-the-art performance on the NAVSIM benchmark in both PDMS and EPDMS. Extensive experiments demonstrate the effectiveness of our multimodal reflection framework and validate the efficacy of the proposed adaptive reflection strategy.

cs.CV

A second-order product-type implicit-explicit Runge-Kutta method preserving unit length and energy dissipation structures for gradient flows of vector fields

Gradient flows of unit vector fields arise in a wide range of physical models such as harmonic map heat flows, nematic liquid crystals, and magnetization dynamics. Designing numerical schemes that simultaneously preserve the unit length constraint and dissipate energy is essential for reliable simulations of such systems. Although projection methods can effectively enforce the unit length constraint, ensuring energy dissipation under projection, especially in high-order schemes, remains challenging. Unlike traditional implicit-explicit Runge-Kutta (IMEX-RK) methods, in this work we propose a general methodology for constructing product-type IMEX-RK schemes that offers greater adaptability to various models with the goal of designing structure-preserving numerical schemes. For gradient flows of unit vector fields with Dirichlet energy, we design a linear and second-order numerical scheme that simultaneously preserves energy dissipation and the unit length constraint by using product-type IMEX-RK methods and projection techniques. Numerical experiments verify the accuracy, stability, and structure-preserving properties of the scheme. According to our best knowledge, this is the first second-order linear scheme that can preserve both the unit length and the original Dirichlet energy for harmonic map heat flows.

math.NA

Thinking with Geometry: Active Geometry Integration for Spatial Reasoning

Recent progress in spatial reasoning with Multimodal Large Language Models (MLLMs) increasingly leverages geometric priors from 3D encoders. However, most existing integration strategies remain passive: geometry is exposed as a global stream and fused in an indiscriminate manner, which often induces semantic-geometry misalignment and redundant signals. We propose GeoThinker, a framework that shifts the paradigm from passive fusion to active perception. Instead of feature mixing, GeoThinker enables the model to selectively retrieve geometric evidence conditioned on its internal reasoning demands. GeoThinker achieves this through Spatial-Grounded Fusion applied at carefully selected VLM layers, where semantic visual priors selectively query and integrate task-relevant geometry via frame-strict cross-attention, further calibrated by Importance Gating that biases per-frame attention toward task-relevant structures. Comprehensive evaluation results show that GeoThinker sets a new state-of-the-art in spatial intelligence, achieving a peak score of 72.6 on the VSI-Bench. Furthermore, GeoThinker demonstrates robust generalization and significantly improved spatial perception across complex downstream scenarios, including embodied referring and autonomous driving. Our results indicate that the ability to actively integrate spatial structures is essential for next-generation spatial intelligence. Code can be found at https://github.com/Li-Hao-yuan/GeoThinker.

cs.CV

MoPO: Incorporating Motion Prior for Occluded Human Mesh Recovery

Although recent studies have made remarkable progress in human mesh recovery, they still exhibit limited robustness to occlusions and often produce inaccurate poses and severe motion jitter due to the insufficient spatial features for occluded body parts. Inspired by the rapid advancements in human motion prediction, we discover that compared to occluded image features, pose sequence inherently contains reliable motion prior for estimating occluded body parts. In this paper, we incorporate Motion Prior for Occluded human mesh recovery, called MoPO. Our MoPO mainly consists of two components: 1) The motion de-occlusion module, where we propose a spatial-temporal occlusion detector to detect joint visibility, and then we propose a lightweight motion predictor to complete the occluded body parts by predicting the most plausible joint positions based on history poses. 2) The motion-aware fusion and refinement module, which fuses the completed joint sequence with image features to estimate human shape and initial human pose. Moreover, the completed joint sequence is further used to refine the final human pose through inverse kinematics, which provides the occlusion-free motion prior for regressing human poses. Extensive experiments demonstrate that MoPO achieves state-of-the-art performance on both occlusion-specific and standard benchmarks, significantly enhancing the accuracy and temporal consistency of occluded human mesh recovery. Our code and demo can be found in the supplementary material.

cs.CV

Diff-KD: Diffusion-based Knowledge Distillation for Collaborative Perception under Corruptions

Multi-agent collaborative perception enables autonomous systems to overcome individual sensing limits through collective intelligence. However, real-world sensor and communication corruptions severely undermine this advantage. Crucially, existing approaches treat corruptions as static perturbations or passively conform to corrupted inputs, failing to actively recover the underlying clean semantics. To address this limitation, we introduce Diff-KD, a framework that integrates diffusion-based generative refinement into teacher-student knowledge distillation for robust collaborative perception. Diff-KD features two core components: (i) Progressive Knowledge Distillation (PKD), which treats local feature restoration as a conditional diffusion process to recover global semantics from corrupted observations; and (ii) Adaptive Gated Fusion (AGF), which dynamically weights neighbors based on ego reliability during fusion. Evaluated on OPV2V and DAIR-V2X under seven corruption types, Diff-KD achieves state-of-the-art performance in both detection accuracy and calibration robustness.

cs.AI

MolLangBench: A Comprehensive Benchmark for Language-Prompted Molecular Structure Recognition, Editing, and Generation

Precise recognition, editing, and generation of molecules are essential prerequisites for both chemists and AI systems tackling various chemical tasks. We present MolLangBench, a comprehensive benchmark designed to evaluate fundamental molecule-language interface tasks: language-prompted molecular structure recognition, editing, and generation. To ensure high-quality, unambiguous, and deterministic outputs, we construct the recognition tasks using automated cheminformatics tools, and curate editing and generation tasks through rigorous expert annotation and validation. MolLangBench supports the evaluation of models that interface language with different molecular representations, including linear strings, molecular images, and molecular graphs. Evaluations of state-of-the-art models reveal significant limitations: the strongest model (GPT-5) achieves $86.2\%$ and $85.5\%$ accuracy on recognition and editing tasks, which are intuitively simple for humans, and performs even worse on the generation task, reaching only $43.0\%$ accuracy. These results highlight the shortcomings of current AI systems in handling even preliminary molecular recognition and manipulation tasks. We hope MolLangBench will catalyze further research toward more effective and reliable AI systems for chemical applications.The dataset and code can be accessed at https://huggingface.co/datasets/ChemFM/MolLangBench and https://github.com/TheLuoFengLab/MolLangBench, respectively.

cs.CL

Energy Dissipation Preserving Feature-based DNN Galerkin Methods for Gradient Flows

In recent years, deep learning methods, exemplified by Physics-Informed Neural Networks (PINNs), have been widely applied to the numerical solution of differential equations. However, these methods may suffer from limited accuracy, high training costs, and lack of robustness, particularly their inability to preserve the intrinsic physical structures of continuous PDE models, such as the energy dissipation property in gradient flow systems. To address these challenges, we propose a feature-based Deep Neural Network Galerkin (DNN-G) framework designed for structure-preserving simulations of gradient flows. Instead of treating neural networks merely as optimization-driven solvers, we employ them as adaptive feature generators that define nonlinear trial spaces within a Galerkin projection formulation.This formulation guarantees semi-discrete energy dissipation and can be naturally combined with energy stable time integration schemes. Several strategies for constructing neural basis functions are investigated, including random features, structured initialization, and problem-informed pre-training. Numerical experiments demonstrate that the proposed method preserves robust energy stability in high-dimensional settings and accurately captures complex topological transitions. With equivalent degrees of freedom, the DNN-G framework achieves higher accuracy than classical spectral methods, highlighting the effectiveness of neural feature representations for the numerical solution of partial differential equations.

math.NA

AD-R1: Closed-Loop Reinforcement Learning for End-to-End Autonomous Driving with Impartial World Models

End-to-end models for autonomous driving hold the promise of learning complex behaviors directly from sensor data, but face critical challenges in safety and handling long-tail events. Reinforcement Learning (RL) offers a promising path to overcome these limitations, yet its success in autonomous driving has been elusive. We identify a fundamental flaw hindering this progress: a deep seated optimistic bias in the world models used for RL. To address this, we introduce a framework for post-training policy refinement built around an Impartial World Model. Our primary contribution is to teach this model to be honest about danger. We achieve this with a novel data synthesis pipeline, Counterfactual Synthesis, which systematically generates a rich curriculum of plausible collisions and off-road events. This transforms the model from a passive scene completer into a veridical forecaster that remains faithful to the causal link between actions and outcomes. We then integrate this Impartial World Model into our closed-loop RL framework, where it serves as an internal critic. During refinement, the agent queries the critic to ``dream" of the outcomes for candidate actions. We demonstrate through extensive experiments, including on a new Risk Foreseeing Benchmark, that our model significantly outperforms baselines in predicting failures. Consequently, when used as a critic, it enables a substantial reduction in safety violations in challenging simulations, proving that teaching a model to dream of danger is a critical step towards building truly safe and intelligent autonomous agents.

cs.CV

CATNet: Collaborative Alignment and Transformation Network for Cooperative Perception

Cooperative perception significantly enhances scene understanding by integrating complementary information from diverse agents. However, existing research often overlooks critical challenges inherent in real-world multi-source data integration, specifically high temporal latency and multi-source noise. To address these practical limitations, we propose Collaborative Alignment and Transformation Network (CATNet), an adaptive compensation framework that resolves temporal latency and noise interference in multi-agent systems. Our key innovations can be summarized in three aspects. First, we introduce a Spatio-Temporal Recurrent Synchronization (STSync) that aligns asynchronous feature streams via adjacent-frame differential modeling, establishing a temporal-spatially unified representation space. Second, we design a Dual-Branch Wavelet Enhanced Denoiser (WTDen) that suppresses global noise and reconstructs localized feature distortions within aligned representations. Third, we construct an Adaptive Feature Selector (AdpSel) that dynamically focuses on critical perceptual features for robust fusion. Extensive experiments on multiple datasets demonstrate that CATNet consistently outperforms existing methods under complex traffic conditions, proving its superior robustness and adaptability.

cs.CV

DriveCombo: Benchmarking Compositional Traffic Rule Reasoning in Autonomous Driving

Multimodal Large Language Models (MLLMs) are rapidly becoming the intelligence brain of end-to-end autonomous driving systems. A key challenge is to assess whether MLLMs can truly understand and follow complex real-world traffic rules. However, existing benchmarks mainly focus on single-rule scenarios like traffic sign recognition, neglecting the complexity of multi-rule concurrency and conflicts in real driving. Consequently, models perform well on simple tasks but often fail or violate rules in real world complex situations. To bridge this gap, we propose DriveCombo, a text and vision-based benchmark for compositional traffic rule reasoning. Inspired by human drivers' cognitive development, we propose a systematic Five-Level Cognitive Ladder that evaluates reasoning from single-rule understanding to multi-rule integration and conflict resolution, enabling quantitative assessment across cognitive stages. We further propose a Rule2Scene Agent that maps language-based traffic rules to dynamic driving scenes through rule crafting and scene generation, enabling scene-level traffic rule visual reasoning. Evaluations of 14 mainstream MLLMs reveal performance drops as task complexity grows, particularly during rule conflicts. After splitting the dataset and fine-tuning on the training set, we further observe substantial improvements in both traffic rule reasoning and downstream planning capabilities. These results highlight the effectiveness of DriveCombo in advancing compliant and intelligent autonomous driving systems.

cs.CV

Adaptive mesh methods for hyperbolic conservation laws with bound-preserving flux limiters

In this paper, we develop bound-preserving (BP) finite-volume schemes for hyperbolic conservation laws on adaptive moving meshes. For scalar conservative laws, we rewrite the conventional high-order discretization as a convex combination of first-order counterparts on each sub-cell, which is mathematically equivalent to introducing a bound-preserving flux limiter. Such a limiter is inexpensive to evaluate, with a feature that the corresponding BP CFL conditions depend solely on the first-order sub-cell schemes. A mild CFL restriction is derived under which high-order spatial accuracy is retained. The proposed BP schemes are extend to two nonlinear systems, namely, the Euler equations and the five-equation transport model of two-medium flows. Numerical results demonstrate that the present schemes possess high resolution and strong robustness properties.

math.NA

FairGE: Fairness-Aware Graph Encoding in Incomplete Social Networks

Graph Transformers (GTs) are increasingly applied to social network analysis, yet their deployment is often constrained by fairness concerns. This issue is particularly critical in incomplete social networks, where sensitive attributes are frequently missing due to privacy and ethical restrictions. Existing solutions commonly generate these incomplete attributes, which may introduce additional biases and further compromise user privacy. To address this challenge, FairGE (Fair Graph Encoding) is introduced as a fairness-aware framework for GTs in incomplete social networks. Instead of generating sensitive attributes, FairGE encodes fairness directly through spectral graph theory. By leveraging the principal eigenvector to represent structural information and padding incomplete sensitive attributes with zeros to maintain independence, FairGE ensures fairness without data reconstruction. Theoretical analysis demonstrates that the method suppresses the influence of non-principal spectral components, thereby enhancing fairness. Extensive experiments on seven real-world social network datasets confirm that FairGE achieves at least a 16% improvement in both statistical parity and equality of opportunity compared with state-of-the-art baselines. The source code is shown in https://github.com/LuoRenqiang/FairGE.

cs.SI

Causal-SAM-LLM: Large Language Models as Causal Reasoners for Robust Medical Segmentation

The clinical utility of deep learning models for medical image segmentation is severely constrained by their inability to generalize to unseen domains. This failure is often rooted in the models learning spurious correlations between anatomical content and domain-specific imaging styles. To overcome this fundamental challenge, we introduce Causal-SAM-LLM, a novel framework that elevates Large Language Models (LLMs) to the role of causal reasoners. Our framework, built upon a frozen Segment Anything Model (SAM) encoder, incorporates two synergistic innovations. First, Linguistic Adversarial Disentanglement (LAD) employs a Vision-Language Model to generate rich, textual descriptions of confounding image styles. By training the segmentation model's features to be contrastively dissimilar to these style descriptions, it learns a representation robustly purged of non-causal information. Second, Test-Time Causal Intervention (TCI) provides an interactive mechanism where an LLM interprets a clinician's natural language command to modulate the segmentation decoder's features in real-time, enabling targeted error correction. We conduct an extensive empirical evaluation on a composite benchmark from four public datasets (BTCV, CHAOS, AMOS, BraTS), assessing generalization under cross-scanner, cross-modality, and cross-anatomy settings. Causal-SAM-LLM establishes a new state of the art in out-of-distribution (OOD) robustness, improving the average Dice score by up to 6.2 points and reducing the Hausdorff Distance by 15.8 mm over the strongest baseline, all while using less than 9% of the full model's trainable parameters. Our work charts a new course for building robust, efficient, and interactively controllable medical AI systems.

cs.CV

Overcoming Spectral Bias via Cross-Attention

Spectral bias implies an imbalance in training dynamics, whereby high-frequency components may converge substantially more slowly than low-frequency ones. To alleviate this issue, we propose a cross-attention-based architecture that adaptively reweights a scaled multiscale random Fourier feature bank with learnable scaling factors. The learnable scaling adjusts the amplitudes of the multiscale random Fourier features, while the cross-attention residual structure provides an input-dependent mechanism to emphasize the most informative scales. As a result, the proposed design accelerates high-frequency convergence relative to comparable baselines built on the same multiscale bank. Moreover, the attention module supports incremental spectral enrichment: dominant Fourier modes extracted from intermediate approximations via discrete Fourier analysis can be appended to the feature bank and used in subsequent training, without modifying the backbone architecture. We further extend this framework to PDE learning by introducing a linear combination of two sub-networks: one specialized in capturing high-frequency components of the PDE solution and the other in capturing low-frequency components, with a learnable (or optimally chosen) mixing factor to balance the two contributions and improve training efficiency in oscillatory regimes. Numerical experiments on high-frequency and discontinuous regression problems, image reconstruction tasks, as well as representative PDE examples, demonstrate the effectiveness and robustness of the proposed method.

math.NA

OmniGen: Unified Multimodal Sensor Generation for Autonomous Driving

Autonomous driving has seen remarkable advancements, largely driven by extensive real-world data collection. However, acquiring diverse and corner-case data remains costly and inefficient. Generative models have emerged as a promising solution by synthesizing realistic sensor data. However, existing approaches primarily focus on single-modality generation, leading to inefficiencies and misalignment in multimodal sensor data. To address these challenges, we propose OminiGen, which generates aligned multimodal sensor data in a unified framework. Our approach leverages a shared Bird\u2019s Eye View (BEV) space to unify multimodal features and designs a novel generalizable multimodal reconstruction method, UAE, to jointly decode LiDAR and multi-view camera data. UAE achieves multimodal sensor decoding through volume rendering, enabling accurate and flexible reconstruction. Furthermore, we incorporate a Diffusion Transformer (DiT) with a ControlNet branch to enable controllable multimodal sensor generation. Our comprehensive experiments demonstrate that OminiGen achieves desired performances in unified multimodal sensor data generation with multimodal consistency and flexible sensor adjustments.

cs.CV