arXiv subjects

Xia Hu

Publications and source records attributed to Xia Hu.

At least 127 records · Page 7Linked to original sources

arXiv2024

Fair Machine Learning in Healthcare: A Review

The digitization of healthcare data coupled with advances in computational capabilities has propelled the adoption of machine learning (ML) in healthcare. However, these methods can perpetuate or even exacerbate existing disparities, leading to fairness concerns such as the unequal distribution of resources and diagnostic inaccuracies among different demographic groups. Addressing these fairness problem is paramount to prevent further entrenchment of social injustices. In this survey, we analyze the intersection of fairness in machine learning and healthcare disparities. We adopt a framework based on the principles of distributive justice to categorize fairness concerns into two distinct classes: equal allocation and equal performance. We provide a critical review of the associated fairness metrics from a machine learning standpoint and examine biases and mitigation strategies across the stages of the ML lifecycle, discussing the relationship between biases and their countermeasures. The paper concludes with a discussion on the pressing challenges that remain unaddressed in ensuring fairness in healthcare ML, and proposes several new research directions that hold promise for developing ethical and equitable ML applications in healthcare.

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arXiv2024

FFSplit: Split Feed-Forward Network For Optimizing Accuracy-Efficiency Trade-off in Language Model Inference

The large number of parameters in Pretrained Language Models enhance their performance, but also make them resource-intensive, making it challenging to deploy them on commodity hardware like a single GPU. Due to the memory and power limitations of these devices, model compression techniques are often used to decrease both the model's size and its inference latency. This usually results in a trade-off between model accuracy and efficiency. Therefore, optimizing this balance is essential for effectively deploying LLMs on commodity hardware. A significant portion of the efficiency challenge is the Feed-forward network (FFN) component, which accounts for roughly $\frac{2}{3}$ total parameters and inference latency. In this paper, we first observe that only a few neurons of FFN module have large output norm for any input tokens, a.k.a. heavy hitters, while the others are sparsely triggered by different tokens. Based on this observation, we explicitly split the FFN into two parts according to the heavy hitters. We improve the efficiency-accuracy trade-off of existing compression methods by allocating more resource to FFN parts with heavy hitters. In practice, our method can reduce model size by 43.1\% and bring $1.25\sim1.56\times$ wall clock time speedup on different hardware with negligible accuracy drop.

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arXiv2023

Towards Mitigating Dimensional Collapse of Representations in Collaborative Filtering

Contrastive Learning (CL) has shown promising performance in collaborative filtering. The key idea is to generate augmentation-invariant embeddings by maximizing the Mutual Information between different augmented views of the same instance. However, we empirically observe that existing CL models suffer from the \textsl{dimensional collapse} issue, where user/item embeddings only span a low-dimension subspace of the entire feature space. This suppresses other dimensional information and weakens the distinguishability of embeddings. Here we propose a non-contrastive learning objective, named nCL, which explicitly mitigates dimensional collapse of representations in collaborative filtering. Our nCL aims to achieve geometric properties of \textsl{Alignment} and \textsl{Compactness} on the embedding space. In particular, the alignment tries to push together representations of positive-related user-item pairs, while compactness tends to find the optimal coding length of user/item embeddings, subject to a given distortion. More importantly, our nCL does not require data augmentation nor negative sampling during training, making it scalable to large datasets. Experimental results demonstrate the superiority of our nCL.

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arXiv2023

Chasing Fairness in Graphs: A GNN Architecture Perspective

There has been significant progress in improving the performance of graph neural networks (GNNs) through enhancements in graph data, model architecture design, and training strategies. For fairness in graphs, recent studies achieve fair representations and predictions through either graph data pre-processing (e.g., node feature masking, and topology rewiring) or fair training strategies (e.g., regularization, adversarial debiasing, and fair contrastive learning). How to achieve fairness in graphs from the model architecture perspective is less explored. More importantly, GNNs exhibit worse fairness performance compared to multilayer perception since their model architecture (i.e., neighbor aggregation) amplifies biases. To this end, we aim to achieve fairness via a new GNN architecture. We propose \textsf{F}air \textsf{M}essage \textsf{P}assing (FMP) designed within a unified optimization framework for GNNs. Notably, FMP \textit{explicitly} renders sensitive attribute usage in \textit{forward propagation} for node classification task using cross-entropy loss without data pre-processing. In FMP, the aggregation is first adopted to utilize neighbors' information and then the bias mitigation step explicitly pushes demographic group node presentation centers together. In this way, FMP scheme can aggregate useful information from neighbors and mitigate bias to achieve better fairness and prediction tradeoff performance. Experiments on node classification tasks demonstrate that the proposed FMP outperforms several baselines in terms of fairness and accuracy on three real-world datasets. The code is available in {\url{https://github.com/zhimengj0326/FMP}}.

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arXiv2023

Auto-PINN: Understanding and Optimizing Physics-Informed Neural Architecture

Physics-informed neural networks (PINNs) are revolutionizing science and engineering practice by bringing together the power of deep learning to bear on scientific computation. In forward modeling problems, PINNs are meshless partial differential equation (PDE) solvers that can handle irregular, high-dimensional physical domains. Naturally, the neural architecture hyperparameters have a large impact on the efficiency and accuracy of the PINN solver. However, this remains an open and challenging problem because of the large search space and the difficulty of identifying a proper search objective for PDEs. Here, we propose Auto-PINN, the first systematic, automated hyperparameter optimization approach for PINNs, which employs Neural Architecture Search (NAS) techniques to PINN design. Auto-PINN avoids manually or exhaustively searching the hyperparameter space associated with PINNs. A comprehensive set of pre-experiments using standard PDE benchmarks allows us to probe the structure-performance relationship in PINNs. We find that the different hyperparameters can be decoupled, and that the training loss function of PINNs is a good search objective. Comparison experiments with baseline methods demonstrate that Auto-PINN produces neural architectures with superior stability and accuracy over alternative baselines.

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arXiv2023

Unraveling the "Anomaly" in Time Series Anomaly Detection: A Self-supervised Tri-domain Solution

The ongoing challenges in time series anomaly detection (TSAD), notably the scarcity of anomaly labels and the variability in anomaly lengths and shapes, have led to the need for a more efficient solution. As limited anomaly labels hinder traditional supervised models in TSAD, various SOTA deep learning techniques, such as self-supervised learning, have been introduced to tackle this issue. However, they encounter difficulties handling variations in anomaly lengths and shapes, limiting their adaptability to diverse anomalies. Additionally, many benchmark datasets suffer from the problem of having explicit anomalies that even random functions can detect. This problem is exacerbated by ill-posed evaluation metrics, known as point adjustment (PA), which can result in inflated model performance. In this context, we propose a novel self-supervised learning based Tri-domain Anomaly Detector (TriAD), which addresses these challenges by modeling features across three data domains - temporal, frequency, and residual domains - without relying on anomaly labels. Unlike traditional contrastive learning methods, TriAD employs both inter-domain and intra-domain contrastive loss to learn common attributes among normal data and differentiate them from anomalies. Additionally, our approach can detect anomalies of varying lengths by integrating with a discord discovery algorithm. It is worth noting that this study is the first to reevaluate the deep learning potential in TSAD, utilizing both rigorously designed datasets (i.e., UCR Archive) and evaluation metrics (i.e., PA%K and affiliation). Through experimental results on the UCR dataset, TriAD achieves an impressive three-fold increase in PA%K based F1 scores over SOTA deep learning models, and 50% increase of accuracy as compared to SOTA discord discovery algorithms.

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arXiv2023

Setting the Trap: Capturing and Defeating Backdoors in Pretrained Language Models through Honeypots

In the field of natural language processing, the prevalent approach involves fine-tuning pretrained language models (PLMs) using local samples. Recent research has exposed the susceptibility of PLMs to backdoor attacks, wherein the adversaries can embed malicious prediction behaviors by manipulating a few training samples. In this study, our objective is to develop a backdoor-resistant tuning procedure that yields a backdoor-free model, no matter whether the fine-tuning dataset contains poisoned samples. To this end, we propose and integrate a honeypot module into the original PLM, specifically designed to absorb backdoor information exclusively. Our design is motivated by the observation that lower-layer representations in PLMs carry sufficient backdoor features while carrying minimal information about the original tasks. Consequently, we can impose penalties on the information acquired by the honeypot module to inhibit backdoor creation during the fine-tuning process of the stem network. Comprehensive experiments conducted on benchmark datasets substantiate the effectiveness and robustness of our defensive strategy. Notably, these results indicate a substantial reduction in the attack success rate ranging from 10\% to 40\% when compared to prior state-of-the-art methods.

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arXiv2023

Chasing Fairness Under Distribution Shift: A Model Weight Perturbation Approach

Fairness in machine learning has attracted increasing attention in recent years. The fairness methods improving algorithmic fairness for in-distribution data may not perform well under distribution shifts. In this paper, we first theoretically demonstrate the inherent connection between distribution shift, data perturbation, and model weight perturbation. Subsequently, we analyze the sufficient conditions to guarantee fairness (i.e., low demographic parity) for the target dataset, including fairness for the source dataset, and low prediction difference between the source and target datasets for each sensitive attribute group. Motivated by these sufficient conditions, we propose robust fairness regularization (RFR) by considering the worst case within the model weight perturbation ball for each sensitive attribute group. We evaluate the effectiveness of our proposed RFR algorithm on synthetic and real distribution shifts across various datasets. Experimental results demonstrate that RFR achieves better fairness-accuracy trade-off performance compared with several baselines. The source code is available at \url{https://github.com/zhimengj0326/RFR_NeurIPS23}.

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arXiv2023

Assessing Privacy Risks in Language Models: A Case Study on Summarization Tasks

Large language models have revolutionized the field of NLP by achieving state-of-the-art performance on various tasks. However, there is a concern that these models may disclose information in the training data. In this study, we focus on the summarization task and investigate the membership inference (MI) attack: given a sample and black-box access to a model's API, it is possible to determine if the sample was part of the training data. We exploit text similarity and the model's resistance to document modifications as potential MI signals and evaluate their effectiveness on widely used datasets. Our results demonstrate that summarization models are at risk of exposing data membership, even in cases where the reference summary is not available. Furthermore, we discuss several safeguards for training summarization models to protect against MI attacks and discuss the inherent trade-off between privacy and utility.

cs.CL↗

arXiv2023

Compress, Then Prompt: Improving Accuracy-Efficiency Trade-off of LLM Inference with Transferable Prompt

While the numerous parameters in Large Language Models (LLMs) contribute to their superior performance, this massive scale makes them inefficient and memory-hungry. Thus, they are hard to deploy on commodity hardware, such as one single GPU. Given the memory and power constraints of such devices, model compression methods are widely employed to reduce both the model size and inference latency, which essentially trades off model quality in return for improved efficiency. Thus, optimizing this accuracy-efficiency trade-off is crucial for the LLM deployment on commodity hardware. In this paper, we introduce a new perspective to optimize this trade-off by prompting compressed models. Specifically, we first observe that for certain questions, the generation quality of a compressed LLM can be significantly improved by adding carefully designed hard prompts, though this isn't the case for all questions. Based on this observation, we propose a soft prompt learning method where we expose the compressed model to the prompt learning process, aiming to enhance the performance of prompts. Our experimental analysis suggests our soft prompt strategy greatly improves the performance of the 8x compressed LLaMA-7B model (with a joint 4-bit quantization and 50% weight pruning compression), allowing them to match their uncompressed counterparts on popular benchmarks. Also, we demonstrate that these learned prompts can be transferred across various datasets, tasks, and compression levels. Hence with this transferability, we can stitch the soft prompt to a newly compressed model to improve the test-time accuracy in an ``in-situ'' way.

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arXiv2023

DiscoverPath: A Knowledge Refinement and Retrieval System for Interdisciplinarity on Biomedical Research

The exponential growth in scholarly publications necessitates advanced tools for efficient article retrieval, especially in interdisciplinary fields where diverse terminologies are used to describe similar research. Traditional keyword-based search engines often fall short in assisting users who may not be familiar with specific terminologies. To address this, we present a knowledge graph-based paper search engine for biomedical research to enhance the user experience in discovering relevant queries and articles. The system, dubbed DiscoverPath, employs Named Entity Recognition (NER) and part-of-speech (POS) tagging to extract terminologies and relationships from article abstracts to create a KG. To reduce information overload, DiscoverPath presents users with a focused subgraph containing the queried entity and its neighboring nodes and incorporates a query recommendation system, enabling users to iteratively refine their queries. The system is equipped with an accessible Graphical User Interface that provides an intuitive visualization of the KG, query recommendations, and detailed article information, enabling efficient article retrieval, thus fostering interdisciplinary knowledge exploration. DiscoverPath is open-sourced at https://github.com/ynchuang/DiscoverPath.

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arXiv2023

Multi-Task Learning for Post-transplant Cause of Death Analysis: A Case Study on Liver Transplant

Organ transplant is the essential treatment method for some end-stage diseases, such as liver failure. Analyzing the post-transplant cause of death (CoD) after organ transplant provides a powerful tool for clinical decision making, including personalized treatment and organ allocation. However, traditional methods like Model for End-stage Liver Disease (MELD) score and conventional machine learning (ML) methods are limited in CoD analysis due to two major data and model-related challenges. To address this, we propose a novel framework called CoD-MTL leveraging multi-task learning to model the semantic relationships between various CoD prediction tasks jointly. Specifically, we develop a novel tree distillation strategy for multi-task learning, which combines the strength of both the tree model and multi-task learning. Experimental results are presented to show the precise and reliable CoD predictions of our framework. A case study is conducted to demonstrate the clinical importance of our method in the liver transplant.

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arXiv2023

GrowLength: Accelerating LLMs Pretraining by Progressively Growing Training Length

The evolving sophistication and intricacies of Large Language Models (LLMs) yield unprecedented advancements, yet they simultaneously demand considerable computational resources and incur significant costs. To alleviate these challenges, this paper introduces a novel, simple, and effective method named ``\growlength'' to accelerate the pretraining process of LLMs. Our method progressively increases the training length throughout the pretraining phase, thereby mitigating computational costs and enhancing efficiency. For instance, it begins with a sequence length of 128 and progressively extends to 4096. This approach enables models to process a larger number of tokens within limited time frames, potentially boosting their performance. In other words, the efficiency gain is derived from training with shorter sequences optimizing the utilization of resources. Our extensive experiments with various state-of-the-art LLMs have revealed that models trained using our method not only converge more swiftly but also exhibit superior performance metrics compared to those trained with existing methods. Furthermore, our method for LLMs pretraining acceleration does not require any additional engineering efforts, making it a practical solution in the realm of LLMs.

cs.CL↗

arXiv2023

MolCPT: Molecule Continuous Prompt Tuning to Generalize Molecular Representation Learning

Molecular representation learning is crucial for the problem of molecular property prediction, where graph neural networks (GNNs) serve as an effective solution due to their structure modeling capabilities. Since labeled data is often scarce and expensive to obtain, it is a great challenge for GNNs to generalize in the extensive molecular space. Recently, the training paradigm of "pre-train, fine-tune" has been leveraged to improve the generalization capabilities of GNNs. It uses self-supervised information to pre-train the GNN, and then performs fine-tuning to optimize the downstream task with just a few labels. However, pre-training does not always yield statistically significant improvement, especially for self-supervised learning with random structural masking. In fact, the molecular structure is characterized by motif subgraphs, which are frequently occurring and influence molecular properties. To leverage the task-related motifs, we propose a novel paradigm of "pre-train, prompt, fine-tune" for molecular representation learning, named molecule continuous prompt tuning (MolCPT). MolCPT defines a motif prompting function that uses the pre-trained model to project the standalone input into an expressive prompt. The prompt effectively augments the molecular graph with meaningful motifs in the continuous representation space; this provides more structural patterns to aid the downstream classifier in identifying molecular properties. Extensive experiments on several benchmark datasets show that MolCPT efficiently generalizes pre-trained GNNs for molecular property prediction, with or without a few fine-tuning steps.

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arXiv2023

Towards Data-centric Graph Machine Learning: Review and Outlook

Data-centric AI, with its primary focus on the collection, management, and utilization of data to drive AI models and applications, has attracted increasing attention in recent years. In this article, we conduct an in-depth and comprehensive review, offering a forward-looking outlook on the current efforts in data-centric AI pertaining to graph data-the fundamental data structure for representing and capturing intricate dependencies among massive and diverse real-life entities. We introduce a systematic framework, Data-centric Graph Machine Learning (DC-GML), that encompasses all stages of the graph data lifecycle, including graph data collection, exploration, improvement, exploitation, and maintenance. A thorough taxonomy of each stage is presented to answer three critical graph-centric questions: (1) how to enhance graph data availability and quality; (2) how to learn from graph data with limited-availability and low-quality; (3) how to build graph MLOps systems from the graph data-centric view. Lastly, we pinpoint the future prospects of the DC-GML domain, providing insights to navigate its advancements and applications.

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arXiv2023

Hessian-aware Quantized Node Embeddings for Recommendation

Graph Neural Networks (GNNs) have achieved state-of-the-art performance in recommender systems. Nevertheless, the process of searching and ranking from a large item corpus usually requires high latency, which limits the widespread deployment of GNNs in industry-scale applications. To address this issue, many methods compress user/item representations into the binary embedding space to reduce space requirements and accelerate inference. Also, they use the Straight-through Estimator (STE) to prevent vanishing gradients during back-propagation. However, the STE often causes the gradient mismatch problem, leading to sub-optimal results. In this work, we present the Hessian-aware Quantized GNN (HQ-GNN) as an effective solution for discrete representations of users/items that enable fast retrieval. HQ-GNN is composed of two components: a GNN encoder for learning continuous node embeddings and a quantized module for compressing full-precision embeddings into low-bit ones. Consequently, HQ-GNN benefits from both lower memory requirements and faster inference speeds compared to vanilla GNNs. To address the gradient mismatch problem in STE, we further consider the quantized errors and its second-order derivatives for better stability. The experimental results on several large-scale datasets show that HQ-GNN achieves a good balance between latency and performance.

cs.IR↗

arXiv2023

Tackling Diverse Minorities in Imbalanced Classification

Imbalanced datasets are commonly observed in various real-world applications, presenting significant challenges in training classifiers. When working with large datasets, the imbalanced issue can be further exacerbated, making it exceptionally difficult to train classifiers effectively. To address the problem, over-sampling techniques have been developed to linearly interpolating data instances between minorities and their neighbors. However, in many real-world scenarios such as anomaly detection, minority instances are often dispersed diversely in the feature space rather than clustered together. Inspired by domain-agnostic data mix-up, we propose generating synthetic samples iteratively by mixing data samples from both minority and majority classes. It is non-trivial to develop such a framework, the challenges include source sample selection, mix-up strategy selection, and the coordination between the underlying model and mix-up strategies. To tackle these challenges, we formulate the problem of iterative data mix-up as a Markov decision process (MDP) that maps data attributes onto an augmentation strategy. To solve the MDP, we employ an actor-critic framework to adapt the discrete-continuous decision space. This framework is utilized to train a data augmentation policy and design a reward signal that explores classifier uncertainty and encourages performance improvement, irrespective of the classifier's convergence. We demonstrate the effectiveness of our proposed framework through extensive experiments conducted on seven publicly available benchmark datasets using three different types of classifiers. The results of these experiments showcase the potential and promise of our framework in addressing imbalanced datasets with diverse minorities.

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arXiv2023

Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching

The process of matching patients with suitable clinical trials is essential for advancing medical research and providing optimal care. However, current approaches face challenges such as data standardization, ethical considerations, and a lack of interoperability between Electronic Health Records (EHRs) and clinical trial criteria. In this paper, we explore the potential of large language models (LLMs) to address these challenges by leveraging their advanced natural language generation capabilities to improve compatibility between EHRs and clinical trial descriptions. We propose an innovative privacy-aware data augmentation approach for LLM-based patient-trial matching (LLM-PTM), which balances the benefits of LLMs while ensuring the security and confidentiality of sensitive patient data. Our experiments demonstrate a 7.32% average improvement in performance using the proposed LLM-PTM method, and the generalizability to new data is improved by 12.12%. Additionally, we present case studies to further illustrate the effectiveness of our approach and provide a deeper understanding of its underlying principles.

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