arXiv subjects

Xue Liu

Publications and source records attributed to Xue Liu.

At least 199 records · Page 11Linked to original sources

arXiv2023

Bidirectional Learning for Offline Model-based Biological Sequence Design

Offline model-based optimization aims to maximize a black-box objective function with a static dataset of designs and their scores. In this paper, we focus on biological sequence design to maximize some sequence score. A recent approach employs bidirectional learning, combining a forward mapping for exploitation and a backward mapping for constraint, and it relies on the neural tangent kernel (NTK) of an infinitely wide network to build a proxy model. Though effective, the NTK cannot learn features because of its parametrization, and its use prevents the incorporation of powerful pre-trained Language Models (LMs) that can capture the rich biophysical information in millions of biological sequences. We adopt an alternative proxy model, adding a linear head to a pre-trained LM, and propose a linearization scheme. This yields a closed-form loss and also takes into account the biophysical information in the pre-trained LM. In addition, the forward mapping and the backward mapping play different roles and thus deserve different weights during sequence optimization. To achieve this, we train an auxiliary model and leverage its weak supervision signal via a bi-level optimization framework to effectively learn how to balance the two mappings. Further, by extending the framework, we develop the first learning rate adaptation module \textit{Adaptive}-$η$, which is compatible with all gradient-based algorithms for offline model-based optimization. Experimental results on DNA/protein sequence design tasks verify the effectiveness of our algorithm. Our code is available~\href{https://anonymous.4open.science/r/BIB-ICLR2023-Submission/README.md}{here.}

cs.CE↗

arXiv2023

Structure-aware Protein Self-supervised Learning

Protein representation learning methods have shown great potential to yield useful representation for many downstream tasks, especially on protein classification. Moreover, a few recent studies have shown great promise in addressing insufficient labels of proteins with self-supervised learning methods. However, existing protein language models are usually pretrained on protein sequences without considering the important protein structural information. To this end, we propose a novel structure-aware protein self-supervised learning method to effectively capture structural information of proteins. In particular, a well-designed graph neural network (GNN) model is pretrained to preserve the protein structural information with self-supervised tasks from a pairwise residue distance perspective and a dihedral angle perspective, respectively. Furthermore, we propose to leverage the available protein language model pretrained on protein sequences to enhance the self-supervised learning. Specifically, we identify the relation between the sequential information in the protein language model and the structural information in the specially designed GNN model via a novel pseudo bi-level optimization scheme. Experiments on several supervised downstream tasks verify the effectiveness of our proposed method.The code of the proposed method is available in \url{https://github.com/GGchen1997/STEPS_Bioinformatics}.

cs.LG↗

arXiv2023

Mixed-Variable PSO with Fairness on Multi-Objective Field Data Replication in Wireless Networks

Digital twins have shown a great potential in supporting the development of wireless networks. They are virtual representations of 5G/6G systems enabling the design of machine learning and optimization-based techniques. Field data replication is one of the critical aspects of building a simulation-based twin, where the objective is to calibrate the simulation to match field performance measurements. Since wireless networks involve a variety of key performance indicators (KPIs), the replication process becomes a multi-objective optimization problem in which the purpose is to minimize the error between the simulated and field data KPIs. Unlike previous works, we focus on designing a data-driven search method to calibrate the simulator and achieve accurate and reliable reproduction of field performance. This work proposes a search-based algorithm based on mixedvariable particle swarm optimization (PSO) to find the optimal simulation parameters. Furthermore, we extend this solution to account for potential conflicts between the KPIs using α-fairness concept to adjust the importance attributed to each KPI during the search. Experiments on field data showcase the effectiveness of our approach to (i) improve the accuracy of the replication, (ii) enhance the fairness between the different KPIs, and (iii) guarantee faster convergence compared to other methods.

cs.NI↗

arXiv2023

Policy Reuse for Communication Load Balancing in Unseen Traffic Scenarios

With the continuous growth in communication network complexity and traffic volume, communication load balancing solutions are receiving increasing attention. Specifically, reinforcement learning (RL)-based methods have shown impressive performance compared with traditional rule-based methods. However, standard RL methods generally require an enormous amount of data to train, and generalize poorly to scenarios that are not encountered during training. We propose a policy reuse framework in which a policy selector chooses the most suitable pre-trained RL policy to execute based on the current traffic condition. Our method hinges on a policy bank composed of policies trained on a diverse set of traffic scenarios. When deploying to an unknown traffic scenario, we select a policy from the policy bank based on the similarity between the previous-day traffic of the current scenario and the traffic observed during training. Experiments demonstrate that this framework can outperform classical and adaptive rule-based methods by a large margin.

cs.NI↗

arXiv2023

Towards Improved Illicit Node Detection with Positive-Unlabelled Learning

Detecting illicit nodes on blockchain networks is a valuable task for strengthening future regulation. Recent machine learning-based methods proposed to tackle the tasks are using some blockchain transaction datasets with a small portion of samples labeled positive and the rest unlabelled (PU). Albeit the assumption that a random sample of unlabeled nodes are normal nodes is used in some works, we discuss that the label mechanism assumption for the hidden positive labels and its effect on the evaluation metrics is worth considering. We further explore that PU classifiers dealing with potential hidden positive labels can have improved performance compared to regular machine learning models. We test the PU classifiers with a list of graph representation learning methods for obtaining different feature distributions for the same data to have more reliable results.

cs.LG↗

arXiv2023

Multi-agent Attention Actor-Critic Algorithm for Load Balancing in Cellular Networks

In cellular networks, User Equipment (UE) handoff from one Base Station (BS) to another, giving rise to the load balancing problem among the BSs. To address this problem, BSs can work collaboratively to deliver a smooth migration (or handoff) and satisfy the UEs' service requirements. This paper formulates the load balancing problem as a Markov game and proposes a Robust Multi-agent Attention Actor-Critic (Robust-MA3C) algorithm that can facilitate collaboration among the BSs (i.e., agents). In particular, to solve the Markov game and find a Nash equilibrium policy, we embrace the idea of adopting a nature agent to model the system uncertainty. Moreover, we utilize the self-attention mechanism, which encourages high-performance BSs to assist low-performance BSs. In addition, we consider two types of schemes, which can facilitate load balancing for both active UEs and idle UEs. We carry out extensive evaluations by simulations, and simulation results illustrate that, compared to the state-of-the-art MARL methods, Robust-\ours~scheme can improve the overall performance by up to 45%.

cs.AI↗

arXiv2023

Bidirectional Learning for Offline Infinite-width Model-based Optimization

In offline model-based optimization, we strive to maximize a black-box objective function by only leveraging a static dataset of designs and their scores. This problem setting arises in numerous fields including the design of materials, robots, DNA sequences, and proteins. Recent approaches train a deep neural network (DNN) on the static dataset to act as a proxy function, and then perform gradient ascent on the existing designs to obtain potentially high-scoring designs. This methodology frequently suffers from the out-of-distribution problem where the proxy function often returns poor designs. To mitigate this problem, we propose BiDirectional learning for offline Infinite-width model-based optimization (BDI). BDI consists of two mappings: the forward mapping leverages the static dataset to predict the scores of the high-scoring designs, and the backward mapping leverages the high-scoring designs to predict the scores of the static dataset. The backward mapping, neglected in previous work, can distill more information from the static dataset into the high-scoring designs, which effectively mitigates the out-of-distribution problem. For a finite-width DNN model, the loss function of the backward mapping is intractable and only has an approximate form, which leads to a significant deterioration of the design quality. We thus adopt an infinite-width DNN model, and propose to employ the corresponding neural tangent kernel to yield a closed-form loss for more accurate design updates. Experiments on various tasks verify the effectiveness of BDI. The code is available at https://github.com/GGchen1997/BDI.

cs.CE↗

arXiv2023

Understanding NFT Price Moves through Tweets Keywords Analysis

Non-Fungible Token (NFT) is evolving with the rise of the cryptocurrency market and the development of blockchain techniques, which leads to an emerging NFT market that has become prosperous rapidly then followed by a cooldown. Nevertheless, the overall rise procedure of the NFT market has not been well understood. To this end, we consider that social media communities evolving alongside the market growth, are worth exploring and reasoning about, as the mineable information might unveil the market behaviors. We explore the procedure from the perspective of NFT Twitter communities and its impact on the NFT price moves with two experiments. We perform a Granger causality test on the number of tweets and the NFT price time series and find that the number of tweets has a positive impact on (Granger-causes) the price or reversely for larger part of the 19 top authentic projects but seldom copycat projects. Besides, to investigate the price moves predictability, we experiment on predicting Markov normalized NFT price (representing the direction and magnitude of price moves) given tweets-extracted word features and interpret the feature importance to find insights. Our results show that social media words as the predictors result in all 19 top projects having a testing accuracy evidently above the baseline. Based on the feature importance analysis, we find that both general market-related words and NFT event-related words have a markedly positive contribution in predicting price moves. We summarize the characteristics including categorization and sentiment for the words with the top and least feature importance.

cs.SI↗

arXiv2023

Robust, High-Precision GNSS Carrier-Phase Positioning with Visual-Inertial Fusion

Robust, high-precision global localization is fundamental to a wide range of outdoor robotics applications. Conventional fusion methods use low-accuracy pseudorange based GNSS measurements ($>>5m$ errors) and can only yield a coarse registration to the global earth-centered-earth-fixed (ECEF) frame. In this paper, we leverage high-precision GNSS carrier-phase positioning and aid it with local visual-inertial odometry (VIO) tracking using an extended Kalman filter (EKF) framework that better resolves the integer ambiguity concerned with GNSS carrier-phase. %to achieve centimeter-level accuracy in the ECEF frame. We also propose an algorithm for accurate GNSS-antenna-to-IMU extrinsics calibration to accurately align VIO to the ECEF frame. Together, our system achieves robust global positioning demonstrated by real-world hardware experiments in severely occluded urban canyons, and outperforms the state-of-the-art RTKLIB by a significant margin in terms of integer ambiguity solution fix rate and positioning RMSE accuracy.

cs.RO↗

arXiv2023

Ternary Quantization: A Survey

Inference time, model size, and accuracy are critical for deploying deep neural network models. Numerous research efforts have been made to compress neural network models with faster inference and higher accuracy. Pruning and quantization are mainstream methods to this end. During model quantization, converting individual float values of layer weights to low-precision ones can substantially reduce the computational overhead and improve the inference speed. Many quantization methods have been studied, for example, vector quantization, low-bit quantization, and binary/ternary quantization. This survey focuses on ternary quantization. We review the evolution of ternary quantization and investigate the relationships among existing ternary quantization methods from the perspective of projection function and optimization methods.

cs.LG↗

arXiv2023

ANSEL Photobot: A Robot Event Photographer with Semantic Intelligence

Our work examines the way in which large language models can be used for robotic planning and sampling, specifically the context of automated photographic documentation. Specifically, we illustrate how to produce a photo-taking robot with an exceptional level of semantic awareness by leveraging recent advances in general purpose language (LM) and vision-language (VLM) models. Given a high-level description of an event we use an LM to generate a natural-language list of photo descriptions that one would expect a photographer to capture at the event. We then use a VLM to identify the best matches to these descriptions in the robot's video stream. The photo portfolios generated by our method are consistently rated as more appropriate to the event by human evaluators than those generated by existing methods.

cs.RO↗

arXiv2023

FIAT: Fine-grained Information Audit for Trustless Transborder Data Flow

Auditing the information leakage of latent sensitive features during the transborder data flow has attracted sufficient attention from global digital regulators. However, there is missing a technical approach for the audit practice due to two technical challenges. Firstly, there is a lack of theory and tools for measuring the information of sensitive latent features in a dataset. Secondly, the transborder data flow involves multi-stakeholders with diverse interests, which means the audit must be trustless. Despite the tremendous efforts in protecting data privacy, an important issue that has long been neglected is that the transmitted data in data flows can leak other regulated information that is not explicitly contained in the data, leading to unaware information leakage risks. To unveil such risks trustfully before the actual data transfer, we propose FIAT, a Fine-grained Information Audit system for Trustless transborder data flow. In FIAT, we use a learning approach to quantify the amount of information leakage, while the technologies of zero-knowledge proof and smart contracts are applied to provide trustworthy and privacy-preserving auditing results. Experiments show that large information leakage can boost the predictability of uninvolved information using simple machine-learning models, revealing the importance of information auditing. Further performance benchmarking also validates the efficiency and scalability of the FIAT auditing system.

cs.IT↗

arXiv2023

Feature Representation Learning for Click-through Rate Prediction: A Review and New Perspectives

Representation learning has been a critical topic in machine learning. In Click-through Rate Prediction, most features are represented as embedding vectors and learned simultaneously with other parameters in the model. With the development of CTR models, feature representation learning has become a trending topic and has been extensively studied by both industrial and academic researchers in recent years. This survey aims at summarizing the feature representation learning in a broader picture and pave the way for future research. To achieve such a goal, we first present a taxonomy of current research methods on feature representation learning following two main issues: (i) which feature to represent and (ii) how to represent these features. Then we give a detailed description of each method regarding these two issues. Finally, the review concludes with a discussion on the future directions of this field.

cs.IR↗

arXiv2023

Self-Supervised Transformer Architecture for Change Detection in Radio Access Networks

Radio Access Networks (RANs) for telecommunications represent large agglomerations of interconnected hardware consisting of hundreds of thousands of transmitting devices (cells). Such networks undergo frequent and often heterogeneous changes caused by network operators, who are seeking to tune their system parameters for optimal performance. The effects of such changes are challenging to predict and will become even more so with the adoption of 5G/6G networks. Therefore, RAN monitoring is vital for network operators. We propose a self-supervised learning framework that leverages self-attention and self-distillation for this task. It works by detecting changes in Performance Measurement data, a collection of time-varying metrics which reflect a set of diverse measurements of the network performance at the cell level. Experimental results show that our approach outperforms the state of the art by 4% on a real-world based dataset consisting of about hundred thousands timeseries. It also has the merits of being scalable and generalizable. This allows it to provide deep insight into the specifics of mode of operation changes while relying minimally on expert knowledge.

cs.LG↗

arXiv2023

Anonymous Pattern Molecular Fingerprint and its Applications on Property Identification

Molecular fingerprints are significant cheminformatics tools to map molecules into vectorial space according to their characteristics in diverse functional groups, atom sequences, and other topological structures. In this paper, we set out to investigate a novel molecular fingerprint \emph{Anonymous-FP} that possesses abundant perception about the underlying interactions shaped in small, medium, and large molecular scale links. In detail, the possible inherent atom chains are sampled from each molecule and are extended in a certain anonymous pattern. After that, the molecular fingerprint \emph{Anonymous-FP} is encoded in virtue of the Natural Language Processing technique \emph{PV-DBOW}. \emph{Anonymous-FP} is studied on molecular property identification and has shown valuable advantages such as rich information content, high experimental performance, and full structural significance. During the experimental verification, the scale of the atom chain or its anonymous manner matters significantly to the overall representation ability of \emph{Anonymous-FP}. Generally, the typical scale $r = 8$ enhances the performance on a series of real-world molecules, and specifically, the accuracy could level up to above $93\%$ on all NCI datasets.

stat.AP↗

arXiv2022

Hyperspherical Loss-Aware Ternary Quantization

Most of the existing works use projection functions for ternary quantization in discrete space. Scaling factors and thresholds are used in some cases to improve the model accuracy. However, the gradients used for optimization are inaccurate and result in a notable accuracy gap between the full precision and ternary models. To get more accurate gradients, some works gradually increase the discrete portion of the full precision weights in the forward propagation pass, e.g., using temperature-based Sigmoid function. Instead of directly performing ternary quantization in discrete space, we push full precision weights close to ternary ones through regularization term prior to ternary quantization. In addition, inspired by the temperature-based method, we introduce a re-scaling factor to obtain more accurate gradients by simulating the derivatives of Sigmoid function. The experimental results show that our method can significantly improve the accuracy of ternary quantization in both image classification and object detection tasks.

cs.CV↗

arXiv2022

Pruning On-the-Fly: A Recoverable Pruning Method without Fine-tuning

Most existing pruning works are resource-intensive, requiring retraining or fine-tuning of the pruned models for accuracy. We propose a retraining-free pruning method based on hyperspherical learning and loss penalty terms. The proposed loss penalty term pushes some of the model weights far from zero, while the rest weight values are pushed near zero and can be safely pruned with no need for retraining and a negligible accuracy drop. In addition, our proposed method can instantly recover the accuracy of a pruned model by replacing the pruned values with their mean value. Our method obtains state-of-the-art results in retraining-free pruning and is evaluated on ResNet-18/50 and MobileNetV2 with ImageNet dataset. One can easily get a 50\% pruned ResNet18 model with a 0.47\% accuracy drop. With fine-tuning, the experiment results show that our method can significantly boost the accuracy of the pruned models compared with existing works. For example, the accuracy of a 70\% pruned (except the first convolutional layer) MobileNetV2 model only drops 3.5\%, much less than the 7\% $\sim$ 10\% accuracy drop with conventional methods.

cs.CV↗

arXiv2022

Hyperspherical Quantization: Toward Smaller and More Accurate Models

Model quantization enables the deployment of deep neural networks under resource-constrained devices. Vector quantization aims at reducing the model size by indexing model weights with full-precision embeddings, i.e., codewords, while the index needs to be restored to 32-bit during computation. Binary and other low-precision quantization methods can reduce the model size up to 32$\times$, however, at the cost of a considerable accuracy drop. In this paper, we propose an efficient framework for ternary quantization to produce smaller and more accurate compressed models. By integrating hyperspherical learning, pruning and reinitialization, our proposed Hyperspherical Quantization (HQ) method reduces the cosine distance between the full-precision and ternary weights, thus reducing the bias of the straight-through gradient estimator during ternary quantization. Compared with existing work at similar compression levels ($\sim$30$\times$, $\sim$40$\times$), our method significantly improves the test accuracy and reduces the model size.

cs.CV↗