arXiv subjects

Yafeng Deng

Publications and source records attributed to Yafeng Deng.

26 records · Page 2Linked to original sources

arXiv2023

Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation?

Conformation Generation is a fundamental problem in drug discovery and cheminformatics. And organic molecule conformation generation, particularly in vacuum and protein pocket environments, is most relevant to drug design. Recently, with the development of geometric neural networks, the data-driven schemes have been successfully applied in this field, both for molecular conformation generation (in vacuum) and binding pose generation (in protein pocket). The former beats the traditional ETKDG method, while the latter achieves similar accuracy compared with the widely used molecular docking software. Although these methods have shown promising results, some researchers have recently questioned whether deep learning (DL) methods perform better in molecular conformation generation via a parameter-free method. To our surprise, what they have designed is some kind analogous to the famous infinite monkey theorem, the monkeys that are even equipped with physics education. To discuss the feasibility of their proving, we constructed a real infinite stochastic monkey for molecular conformation generation, showing that even with a more stochastic sampler for geometry generation, the coverage of the benchmark QM-computed conformations are higher than those of most DL-based methods. By extending their physical monkey algorithm for binding pose prediction, we also discover that the successful docking rate also achieves near-best performance among existing DL-based docking models. Thus, though their conclusions are right, their proof process needs more concern.

q-bio.BM↗

arXiv2023

StarGraph: Knowledge Representation Learning based on Incomplete Two-hop Subgraph

Conventional representation learning algorithms for knowledge graphs (KG) map each entity to a unique embedding vector, ignoring the rich information contained in the neighborhood. We propose a method named StarGraph, which gives a novel way to utilize the neighborhood information for large-scale knowledge graphs to obtain entity representations. An incomplete two-hop neighborhood subgraph for each target node is at first generated, then processed by a modified self-attention network to obtain the entity representation, which is used to replace the entity embedding in conventional methods. We achieved SOTA performance on ogbl-wikikg2 and got competitive results on fb15k-237. The experimental results proves that StarGraph is efficient in parameters, and the improvement made on ogbl-wikikg2 demonstrates its great effectiveness of representation learning on large-scale knowledge graphs. The code is now available at \url{https://github.com/hzli-ucas/StarGraph}.

cs.CL↗

arXiv2022

Disjoint Masking with Joint Distillation for Efficient Masked Image Modeling

Masked image modeling (MIM) has shown great promise for self-supervised learning (SSL) yet been criticized for learning inefficiency. We believe the insufficient utilization of training signals should be responsible. To alleviate this issue, we introduce a conceptually simple yet learning-efficient MIM training scheme, termed Disjoint Masking with Joint Distillation (DMJD). For disjoint masking (DM), we sequentially sample multiple masked views per image in a mini-batch with the disjoint regulation to raise the usage of tokens for reconstruction in each image while keeping the masking rate of each view. For joint distillation (JD), we adopt a dual branch architecture to respectively predict invisible (masked) and visible (unmasked) tokens with superior learning targets. Rooting in orthogonal perspectives for training efficiency improvement, DM and JD cooperatively accelerate the training convergence yet not sacrificing the model generalization ability. Concretely, DM can train ViT with half of the effective training epochs (3.7 times less time-consuming) to report competitive performance. With JD, our DMJD clearly improves the linear probing classification accuracy over ConvMAE by 5.8%. On fine-grained downstream tasks like semantic segmentation, object detection, etc., our DMJD also presents superior generalization compared with state-of-the-art SSL methods. The code and model will be made public at https://github.com/mx-mark/DMJD.

cs.CV↗

arXiv2022

TripleRE: Knowledge Graph Embeddings via Tripled Relation Vectors

Translation-based knowledge graph embedding has been one of the most important branches for knowledge representation learning since TransE came out. Although many translation-based approaches have achieved some progress in recent years, the performance was still unsatisfactory. This paper proposes a novel knowledge graph embedding method named TripleRE with two versions. The first version of TripleRE creatively divide the relationship vector into three parts. The second version takes advantage of the concept of residual and achieves better performance. In addition, attempts on using NodePiece to encode entities achieved promising results in reducing the parametric size, and solved the problems of scalability. Experiments show that our approach achieved state-of-the-art performance on the large-scale knowledge graph dataset, and competitive performance on other datasets.

cs.AI↗

arXiv2022

WaBERT: A Low-resource End-to-end Model for Spoken Language Understanding and Speech-to-BERT Alignment

Historically lower-level tasks such as automatic speech recognition (ASR) and speaker identification are the main focus in the speech field. Interest has been growing in higher-level spoken language understanding (SLU) tasks recently, like sentiment analysis (SA). However, improving performances on SLU tasks remains a big challenge. Basically, there are two main methods for SLU tasks: (1) Two-stage method, which uses a speech model to transfer speech to text, then uses a language model to get the results of downstream tasks; (2) One-stage method, which just fine-tunes a pre-trained speech model to fit in the downstream tasks. The first method loses emotional cues such as intonation, and causes recognition errors during ASR process, and the second one lacks necessary language knowledge. In this paper, we propose the Wave BERT (WaBERT), a novel end-to-end model combining the speech model and the language model for SLU tasks. WaBERT is based on the pre-trained speech and language model, hence training from scratch is not needed. We also set most parameters of WaBERT frozen during training. By introducing WaBERT, audio-specific information and language knowledge are integrated in the short-time and low-resource training process to improve results on the dev dataset of SLUE SA tasks by 1.15% of recall score and 0.82% of F1 score. Additionally, we modify the serial Continuous Integrate-and-Fire (CIF) mechanism to achieve the monotonic alignment between the speech and text modalities.

cs.CL↗

arXiv2021

The 2nd Anti-UAV Workshop & Challenge: Methods and Results

The 2nd Anti-UAV Workshop \& Challenge aims to encourage research in developing novel and accurate methods for multi-scale object tracking. The Anti-UAV dataset used for the Anti-UAV Challenge has been publicly released. There are two subsets in the dataset, $i.e.$, the test-dev subset and test-challenge subset. Both subsets consist of 140 thermal infrared video sequences, spanning multiple occurrences of multi-scale UAVs. Around 24 participating teams from the globe competed in the 2nd Anti-UAV Challenge. In this paper, we provide a brief summary of the 2nd Anti-UAV Workshop \& Challenge including brief introductions to the top three methods.The submission leaderboard will be reopened for researchers that are interested in the Anti-UAV challenge. The benchmark dataset and other information can be found at: https://anti-uav.github.io/.

cs.CV↗

arXiv2015

DenseBox: Unifying Landmark Localization with End to End Object Detection

How can a single fully convolutional neural network (FCN) perform on object detection? We introduce DenseBox, a unified end-to-end FCN framework that directly predicts bounding boxes and object class confidences through all locations and scales of an image. Our contribution is two-fold. First, we show that a single FCN, if designed and optimized carefully, can detect multiple different objects extremely accurately and efficiently. Second, we show that when incorporating with landmark localization during multi-task learning, DenseBox further improves object detection accuray. We present experimental results on public benchmark datasets including MALF face detection and KITTI car detection, that indicate our DenseBox is the state-of-the-art system for detecting challenging objects such as faces and cars.

cs.CV↗

arXiv2015

Targeting Ultimate Accuracy: Face Recognition via Deep Embedding

Face Recognition has been studied for many decades. As opposed to traditional hand-crafted features such as LBP and HOG, much more sophisticated features can be learned automatically by deep learning methods in a data-driven way. In this paper, we propose a two-stage approach that combines a multi-patch deep CNN and deep metric learning, which extracts low dimensional but very discriminative features for face verification and recognition. Experiments show that this method outperforms other state-of-the-art methods on LFW dataset, achieving 99.77% pair-wise verification accuracy and significantly better accuracy under other two more practical protocols. This paper also discusses the importance of data size and the number of patches, showing a clear path to practical high-performance face recognition systems in real world.

cs.CV↗