arXiv subjects

Yan Yang

Publications and source records attributed to Yan Yang.

At least 127 records · Page 7Linked to original sources

arXiv2023

Compressible Turbulence in the Near-Sun Solar Wind: Parker Solar Probe's First Eight Perihelia

Many questions remain about the compressibility of solar wind turbulence with respect to its origins and properties. Low plasma beta (ratio of thermal to magnetic pressure) environments allow for the easier generation of compressible turbulence, enabling study of the relationship between density fluctuations and turbulent Mach number. Utilizing Parker Solar Probe plasma data, we examine the normalized proton density fluctuations $\langle δn_p^2 \rangle ^{1/2}/\langle n_p\rangle = δ{n_p}_{rms}/\langle n_p\rangle$ as a function of turbulent Mach number $M_t$ conditioned on plasma beta and cross helicity. With consideration of statistical error in the parameters computed from in-situ data, we find a general result that $δ{n_p}_{rms}/\langle n_p\rangle \sim M_t^{1.18 \pm 0.04}$, consistent with both linear-wave theory, and nearly-incompressible turbulence in an inhomogeneous background field. We compare observational results conditioned on plasma beta and cross helicity with 3D magnetohydrodynamic simulations, and observe rather significant similarities with respect to how those parameters affect the proportionality between density fluctuations and turbulent Mach number. This study further investigates the complexity of compressible turbulence as viewed by the density scaling relationship, and may help better understand the compressible environment of the near-Sun solar wind.

astro-ph.SR↗

arXiv2023

Rapid Seismic Waveform Modeling and Inversion with Neural Operators

Seismic waveform modeling is a powerful tool for determining earth structure models and unraveling earthquake rupture processes, but it is usually computationally expensive. We introduce a scheme to vastly accelerate these calculations with a recently developed machine learning paradigm called the neural operator. Once trained, these models can simulate a full wavefield at negligible cost. We use a U-shaped neural operator to learn a general solution operator to the 2D elastic wave equation from an ensemble of numerical simulations performed with random velocity models and source locations. We show that full waveform modeling with neural operators is nearly two orders of magnitude faster than conventional numerical methods, and more importantly, the trained model enables accurate simulation for velocity models, source locations, and mesh discretization distinctly different from the training dataset. The method also enables convenient full-waveform inversion with automatic differentiation.

physics.geo-ph↗

arXiv2023

Implementation and performances of the IPbus protocol for the JUNO Large-PMT readout electronics

The Jiangmen Underground Neutrino Observatory (JUNO) is a large neutrino detector currently under construction in China. Thanks to the tight requirements on its optical and radio-purity properties, it will be able to perform leading measurements detecting terrestrial and astrophysical neutrinos in a wide energy range from tens of keV to hundreds of MeV. A key requirement for the success of the experiment is an unprecedented 3% energy resolution, guaranteed by its large active mass (20 kton) and the use of more than 20,000 20-inch photo-multiplier tubes (PMTs) acquired by high-speed, high-resolution sampling electronics located very close to the PMTs. As the Front-End and Read-Out electronics is expected to continuously run underwater for 30 years, a reliable readout acquisition system capable of handling the timestamped data stream coming from the Large-PMTs and permitting to simultaneously monitor and operate remotely the inaccessible electronics had to be developed. In this contribution, the firmware and hardware implementation of the IPbus based readout protocol will be presented, together with the performances measured on final modules during the mass production of the electronics.

physics.ins-det↗

arXiv2023

Relaxation of the turbulent magnetosheath

In turbulence, nonlinear terms drive energy transfer from large-scale eddies into small scales through the so-called energy cascade. Turbulence often relaxes toward states that minimize energy; typically these states are considered globally. However, turbulence can also relax toward local quasi-equilibrium states, creating patches or cells where the magnitude of nonlinearity is reduced and energy cascade is impaired. We show, for the first time, compelling observational evidence that this ``cellularization'' of turbulence can occur due to local relaxation in a strongly turbulent natural environment such as the Earth's magnetosheath.

physics.flu-dyn↗

arXiv2023

Multipoint Turbulence Analysis with Helioswarm

Exploration of plasma dynamics in space, including turbulence, is entering a new era of multi-satellite constellation measurements that will determine fundamental properties with unprecedented precision. Familiar but imprecise approximations will need to be abandoned and replaced with more advanced approaches. We present a preparatory study of the evaluation of second- and third-order statistics, using simultaneous measurements at many points. Here, for specificity, the orbital configuration of the NASA Helioswarm mission is employed in conjunction with three-dimensional magnetohydrodynamics numerical simulations of turbulence. The Helioswarm 9-spacecraft constellation flies virtually through the turbulence to compare results with the exact numerical statistics. We demonstrate novel increment-based techniques for the computation of (1) the multidimensional spectra and (2) the turbulent energy flux. This latter increment-space estimate of the cascade rate, based on the third-order Yaglom-Politano-Pouquet theory, uses numerous increment-space tetrahedra. Our investigation reveals that Helioswarm will provide crucial information on the nature of astrophysical turbulence.

physics.plasm-ph↗

arXiv2023

Mass testing of the JUNO experiment 20-inch PMTs readout electronics

The Jiangmen Underground Neutrino Observatory (JUNO) is a multi-purpose, large size, liquid scintillator experiment under construction in China. JUNO will perform leading measurements detecting neutrinos from different sources (reactor, terrestrial and astrophysical neutrinos) covering a wide energy range (from 200 keV to several GeV). This paper focuses on the design and development of a test protocol for the 20-inch PMT underwater readout electronics, performed in parallel to the mass production line. In a time period of about ten months, a total number of 6950 electronic boards were tested with an acceptance yield of 99.1%.

physics.ins-det↗

arXiv2022

Validation and integration tests of the JUNO 20-inch PMTs readout electronics

The Jiangmen Underground Neutrino Observatory (JUNO) is a large neutrino detector currently under construction in China. JUNO will be able to study the neutrino mass ordering and to perform leading measurements detecting terrestrial and astrophysical neutrinos in a wide energy range, spanning from 200 keV to several GeV. Given the ambitious physics goals of JUNO, the electronic system has to meet specific tight requirements, and a thorough characterization is required. The present paper describes the tests performed on the readout modules to measure their performances.

physics.ins-det↗

arXiv2022

Energy transfer and third-order law in forced anisotropic MHD turbulence with hyperviscosity

The Kolmogorov-Yaglom (third-order) law, links energy transfer rates in the inertial range of magneto-hydrodynamic (MHD) turbulence with third-order structure functions. Anisotropy, a typical property in the solar wind, largely challenges the applicability of the third-order law with isotropic assumption. To shed light on the energy transfer process in the presence of anisotropy, the present study conducted direct numerical simulations (DNSs) on forced MHD turbulence with normal and hyper-viscosity under various strengths of the external magnetic field ($B_0$), and calculated three forms of third-order structure function with or without averaging azimuthal or polar angles to $B_0$ direction. Correspondingly, three forms of estimated energy transfer rates were studied systematically with various $B_0$. The result shows that the peak of the estimated longitudinal transfer rate occurs at larger scales as closer to the $B_0$ direction, and its maximum shifts away from the $B_0$ direction at larger $B_0$. Compared with normal viscous cases, hyper-viscous cases can attain better separation of the inertial range from the dissipation range, thus facilitating the analyses of the inertial range properties and the estimation of the energy cascade rates. The direction-averaged third-order structure function over a spherical surface proposed in literature predicts the energy transfer rates and inertial range accurately, even at very high $B_0$. With limited statistics, the calculation of the third-order structure function shows a stronger dependence on averaging of azimuthal angles than the time, especially at high $B_0$ cases. These findings provide insights into the anisotropic effect on the estimation of energy transfer rates.

physics.flu-dyn↗

arXiv2022

Turbulence compressibility reduction with helicity

Numerical test of isotropic turbulence compressibility reduction with helicity in a cyclic box is performed. The ratios of compressibility-relevant-mode spectra over those of kinetic energy present power laws at large wavenumbers in the dissipation range, indicating a common difference of $11/15$ in the exponents of the algebraic prefactor of the nonhelical power spectra over those of helical ones. Our results being not derived from the shapes of the spectra themselves, the implied information about the helicity effect on the complex singularities of the discretized dynamical system can still be of reasonable value for insights of the Navier-Stokes equation, although the high-order finite difference scheme used for computation may not be as accurate in dissipation range as the state-of-the-art of incompressible turbulence with pseudo-spectral method. Possible applications in controlling flows, for the purposes of, say, decreasing turbulence noise, are also discussed according to the spectral fluctuations.

physics.flu-dyn↗

arXiv2022

Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction

Spatial transcriptomics (ST) is essential for understanding diseases and developing novel treatments. It measures gene expression of each fine-grained area (i.e., different windows) in the tissue slide with low throughput. This paper proposes an Exemplar Guided Network (EGN) to accurately and efficiently predict gene expression directly from each window of a tissue slide image. We apply exemplar learning to dynamically boost gene expression prediction from nearest/similar exemplars of a given tissue slide image window. Our EGN framework composes of three main components: 1) an extractor to structure a representation space for unsupervised exemplar retrievals; 2) a vision transformer (ViT) backbone to progressively extract representations of the input window; and 3) an Exemplar Bridging (EB) block to adaptively revise the intermediate ViT representations by using the nearest exemplars. Finally, we complete the gene expression prediction task with a simple attention-based prediction block. Experiments on standard benchmark datasets indicate the superiority of our approach when comparing with the past state-of-the-art (SOTA) methods.

cs.CV↗

arXiv2022

ISG: I can See Your Gene Expression

This paper aims to predict gene expression from a histology slide image precisely. Such a slide image has a large resolution and sparsely distributed textures. These obstruct extracting and interpreting discriminative features from the slide image for diverse gene types prediction. Existing gene expression methods mainly use general components to filter textureless regions, extract features, and aggregate features uniformly across regions. However, they ignore gaps and interactions between different image regions and are therefore inferior in the gene expression task. Instead, we present ISG framework that harnesses interactions among discriminative features from texture-abundant regions by three new modules: 1) a Shannon Selection module, based on the Shannon information content and Solomonoff's theory, to filter out textureless image regions; 2) a Feature Extraction network to extract expressive low-dimensional feature representations for efficient region interactions among a high-resolution image; 3) a Dual Attention network attends to regions with desired gene expression features and aggregates them for the prediction task. Extensive experiments on standard benchmark datasets show that the proposed ISG framework outperforms state-of-the-art methods significantly.

cs.CV↗

arXiv2022

Accelerating Time-Reversal Imaging with Neural Operators for Real-time Earthquake Locations

Earthquake hypocenters form the basis for a wide array of seismological analyses. Pick-based earthquake location workflows rely on the accuracy of phase pickers and may be biased when dealing with complex earthquake sequences in heterogeneous media. Time-reversal imaging of passive seismic sources with the cross-correlation imaging condition has potential for earthquake location with high accuracy and high resolution, but carries a large computational cost. Here we present an alternative deep-learning approach for earthquake location by combining the benefits of neural operators for wave propagation and time reversal imaging with multi-station waveform recordings. A U-shaped neural operator is trained to propagate seismic waves with various source time functions and thus can predict a backpropagated wavefield for each station in negligible time. These wavefields can either be stacked or correlated to locate earthquakes from the resulting source images. Compared with other waveform-based deep-learning location methods, time reversal imaging accounts for physical laws of wave propagation and is expected to achieve accurate earthquake location. We demonstrate the method with the 2D acoustic wave equation on both synthetic and field data. The results show that our method can efficiently obtain high resolution and high accuracy correlation-based time reversal imaging of earthquake sources. Moreover, our approach is adaptable to the number and geometry of seismic stations, which opens new strategies for real-time earthquake location and monitoring with dense seismic networks.

physics.geo-ph↗

arXiv2022

Less is More: Facial Landmarks can Recognize a Spontaneous Smile

Smile veracity classification is a task of interpreting social interactions. Broadly, it distinguishes between spontaneous and posed smiles. Previous approaches used hand-engineered features from facial landmarks or considered raw smile videos in an end-to-end manner to perform smile classification tasks. Feature-based methods require intervention from human experts on feature engineering and heavy pre-processing steps. On the contrary, raw smile video inputs fed into end-to-end models bring more automation to the process with the cost of considering many redundant facial features (beyond landmark locations) that are mainly irrelevant to smile veracity classification. It remains unclear to establish discriminative features from landmarks in an end-to-end manner. We present a MeshSmileNet framework, a transformer architecture, to address the above limitations. To eliminate redundant facial features, our landmarks input is extracted from Attention Mesh, a pre-trained landmark detector. Again, to discover discriminative features, we consider the relativity and trajectory of the landmarks. For the relativity, we aggregate facial landmark that conceptually formats a curve at each frame to establish local spatial features. For the trajectory, we estimate the movements of landmark composed features across time by self-attention mechanism, which captures pairwise dependency on the trajectory of the same landmark. This idea allows us to achieve state-of-the-art performances on UVA-NEMO, BBC, MMI Facial Expression, and SPOS datasets.

cs.CV↗

arXiv2022

Physical interpretation of nonlocal quantum correlation through local description of subsystems

Characterization and categorization of quantum correlations are both fundamentally and practically important in quantum information science. Although quantum correlations such as non-separability, steerability, and non-locality can be characterized by different theoretical models in different scenarios with either known (trusted) or unknown (untrusted) knowledge of the associated systems, such characterization sometimes lacks unambiguous to experimentalist. In this work, we propose the physical interpretation of nonlocal quantum correlation between two systems. In the absence of {\it complete local description} of one of the subsystems quantified by the {\it local uncertainty relation}, the correlation between subsystems becomes nonlocal. Remarkably, different nonlocal quantum correlations can be discriminated from a single uncertainty relation derived under local hidden state (LHS)-LHS model only. We experimentally characterize the two-qubit Werner state in different scenarios.

quant-ph↗

arXiv2022

Strategies for determining the cascade rate in MHD turbulence: isotropy, anisotropy, and spacecraft sampling

``Exact'' laws for evaluating cascade rates, tracing back to the Kolmogorov ``4/5'' law, have been extended to many systems of interest including magnetohydrodynamics (MHD), and compressible flows of the magnetofluid and ordinary fluid types. It is understood that implementations may be limited by the quantity of available data and by the lack of turbulence symmetry. Assessment of the accuracy and feasibility of such ``third-order'' (or Yaglom) relations is most effectively accomplished by examining the von Karman-Howarth equation in increment form, a framework from which the third-order laws are derived as asymptotic approximations. Using this approach, we examine the context of third-order laws for incompressible MHD in some detail. The simplest versions rely on the assumption of isotropy and the presence of a well-defined inertial range, while related procedures generalize the same idea to arbitrary rotational symmetries. Conditions for obtaining correct and accurate values of the dissipation rate from these laws based on several sampling and fitting strategies are investigated using results from simulations. The questions we address are of particular relevance to sampling of solar wind turbulence by one or more spacecraft.

physics.space-ph↗

arXiv2022

Hardness prediction of age-hardening aluminum alloy based on ensemble learning

With the rapid development of artificial intelligence, the combination of material database and machine learning has driven the progress of material informatics. Because aluminum alloy is widely used in many fields, so it is significant to predict the properties of aluminum alloy. In this thesis, the data of Al-Cu-Mg-X (X: Zn, Zr, etc.) alloy are used to input the composition, aging conditions (time and temperature) and predict its hardness. An ensemble learning solution based on automatic machine learning and an attention mechanism introduced into the secondary learner of deep neural network are proposed respectively. The experimental results show that selecting the correct secondary learner can further improve the prediction accuracy of the model. This manuscript introduces the attention mechanism to improve the secondary learner based on deep neural network, and obtains a fusion model with better performance. The R-Square of the best model is 0.9697 and the MAE is 3.4518HV.

cond-mat.mtrl-sci↗

arXiv2022

K-textures, a self-supervised hard clustering deep learning algorithm for satellite image segmentation

Deep learning self-supervised algorithms that can segment an image in a fixed number of hard labels such as the k-means algorithm and relying only on deep learning techniques are still lacking. Here, we introduce the k-textures algorithm which provides self-supervised segmentation of a 4-band image (RGB-NIR) for a $k$ number of classes. An example of its application on high resolution Planet satellite imagery is given. Our algorithm shows that discrete search is feasible using convolutional neural networks (CNN) and gradient descent. The model detects $k$ hard clustering classes represented in the model as $k$ discrete binary masks and their associated $k$ independently generated textures, that combined are a simulation of the original image. The similarity loss is the mean squared error between the features of the original and the simulated image, both extracted from the penultimate convolutional block of Keras 'imagenet' pretrained VGG-16 model and a custom feature extractor made with Planet data. The main advances of the k-textures model are: first, the $k$ discrete binary masks are obtained inside the model using gradient descent. The model allows for the generation of discrete binary masks using a novel method using a hard sigmoid activation function. Second, it provides hard clustering classes -- each pixels has only one class. Finally, in comparison to k-means, where each pixel is considered independently, here, contextual information is also considered and each class is not associated only to similar values in the color channels but also to a texture. Our approach is designed to ease the production of training samples for satellite image segmentation and the k-textures architecture could be adapted to support different number of bands and for more complex tasks, such as object self-segmentation. The model codes and weights are available at https://doi.org/10.5281/zenodo.6359859

cs.CV↗

arXiv2022

DPST: De Novo Peptide Sequencing with Amino-Acid-Aware Transformers

De novo peptide sequencing aims to recover amino acid sequences of a peptide from tandem mass spectrometry (MS) data. Existing approaches for de novo analysis enumerate MS evidence for all amino acid classes during inference. It leads to over-trimming on receptive fields of MS data and restricts MS evidence associated with following undecoded amino acids. Our approach, DPST, circumvents these limitations with two key components: (1) A confidence value aggregation encoder to sketch spectrum representations according to amino-acid-based connectivity among MS; (2) A global-local fusion decoder to progressively assimilate contextualized spectrum representations with a predefined preconception of localized MS evidence and amino acid priors. Our components originate from a closed-form solution and selectively attend to informative amino-acid-aware MS representations. Through extensive empirical studies, we demonstrate the superiority of DPST, showing that it outperforms state-of-the-art approaches by a margin of 12% - 19% peptide accuracy.

q-bio.QM↗