arXiv subjects

Yiyu Shi

Publications and source records attributed to Yiyu Shi.

At least 55 records · Page 3Linked to original sources

arXiv2025

Contrastive Learning with Diffusion Features for Weakly Supervised Medical Image Segmentation

Weakly supervised semantic segmentation (WSSS) methods using class labels often rely on class activation maps (CAMs) to localize objects. However, traditional CAM-based methods struggle with partial activations and imprecise object boundaries due to optimization discrepancies between classification and segmentation. Recently, the conditional diffusion model (CDM) has been used as an alternative for generating segmentation masks in WSSS, leveraging its strong image generation capabilities tailored to specific class distributions. By modifying or perturbing the condition during diffusion sampling, the related objects can be highlighted in the generated images. Yet, the saliency maps generated by CDMs are prone to noise from background alterations during reverse diffusion. To alleviate the problem, we introduce Contrastive Learning with Diffusion Features (CLDF), a novel method that uses contrastive learning to train a pixel decoder to map the diffusion features from a frozen CDM to a low-dimensional embedding space for segmentation. Specifically, we integrate gradient maps generated from CDM external classifier with CAMs to identify foreground and background pixels with fewer false positives/negatives for contrastive learning, enabling robust pixel embedding learning. Experimental results on four segmentation tasks from two public medical datasets demonstrate that our method significantly outperforms existing baselines.

cs.CV↗

arXiv2025

Inpainting is All You Need: A Diffusion-based Augmentation Method for Semi-supervised Medical Image Segmentation

Collecting pixel-level labels for medical datasets can be a laborious and expensive process, and enhancing segmentation performance with a scarcity of labeled data is a crucial challenge. This work introduces AugPaint, a data augmentation framework that utilizes inpainting to generate image-label pairs from limited labeled data. AugPaint leverages latent diffusion models, known for their ability to generate high-quality in-domain images with low overhead, and adapts the sampling process for the inpainting task without need for retraining. Specifically, given a pair of image and label mask, we crop the area labeled with the foreground and condition on it during reversed denoising process for every noise level. Masked background area would gradually be filled in, and all generated images are paired with the label mask. This approach ensures the accuracy of match between synthetic images and label masks, setting it apart from existing dataset generation methods. The generated images serve as valuable supervision for training downstream segmentation models, effectively addressing the challenge of limited annotations. We conducted extensive evaluations of our data augmentation method on four public medical image segmentation datasets, including CT, MRI, and skin imaging. Results across all datasets demonstrate that AugPaint outperforms state-of-the-art label-efficient methodologies, significantly improving segmentation performance.

cs.CV↗

arXiv2025

Incorporating Rather Than Eliminating: Achieving Fairness for Skin Disease Diagnosis Through Group-Specific Expert

AI-based systems have achieved high accuracy in skin disease diagnostics but often exhibit biases across demographic groups, leading to inequitable healthcare outcomes and diminished patient trust. Most existing bias mitigation methods attempt to eliminate the correlation between sensitive attributes and diagnostic prediction, but those methods often degrade performance due to the lost of clinically relevant diagnostic cues. In this work, we propose an alternative approach that incorporates sensitive attributes to achieve fairness. We introduce FairMoE, a framework that employs layer-wise mixture-of-experts modules to serve as group-specific learners. Unlike traditional methods that rigidly assign data based on group labels, FairMoE dynamically routes data to the most suitable expert, making it particularly effective for handling cases near group boundaries. Experimental results show that, unlike previous fairness approaches that reduce performance, FairMoE achieves substantial accuracy improvements while preserving comparable fairness metrics.

cs.CV↗

arXiv2025

Unsupervised Out-of-Distribution Detection in Medical Imaging Using Multi-Exit Class Activation Maps and Feature Masking

Out-of-distribution (OOD) detection is essential for ensuring the reliability of deep learning models in medical imaging applications. This work is motivated by the observation that class activation maps (CAMs) for in-distribution (ID) data typically emphasize regions that are highly relevant to the model's predictions, whereas OOD data often lacks such focused activations. By masking input images with inverted CAMs, the feature representations of ID data undergo more substantial changes compared to those of OOD data, offering a robust criterion for differentiation. In this paper, we introduce a novel unsupervised OOD detection framework, Multi-Exit Class Activation Map (MECAM), which leverages multi-exit CAMs and feature masking. By utilizing mult-exit networks that combine CAMs from varying resolutions and depths, our method captures both global and local feature representations, thereby enhancing the robustness of OOD detection. We evaluate MECAM on multiple ID datasets, including ISIC19 and PathMNIST, and test its performance against three medical OOD datasets, RSNA Pneumonia, COVID-19, and HeadCT, and one natural image OOD dataset, iSUN. Comprehensive comparisons with state-of-the-art OOD detection methods validate the effectiveness of our approach. Our findings emphasize the potential of multi-exit networks and feature masking for advancing unsupervised OOD detection in medical imaging, paving the way for more reliable and interpretable models in clinical practice.

cs.CV↗

arXiv2025

Contrastive Learning with Synthetic Positives

Contrastive learning with the nearest neighbor has proved to be one of the most efficient self-supervised learning (SSL) techniques by utilizing the similarity of multiple instances within the same class. However, its efficacy is constrained as the nearest neighbor algorithm primarily identifies "easy" positive pairs, where the representations are already closely located in the embedding space. In this paper, we introduce a novel approach called Contrastive Learning with Synthetic Positives (CLSP) that utilizes synthetic images, generated by an unconditional diffusion model, as the additional positives to help the model learn from diverse positives. Through feature interpolation in the diffusion model sampling process, we generate images with distinct backgrounds yet similar semantic content to the anchor image. These images are considered "hard" positives for the anchor image, and when included as supplementary positives in the contrastive loss, they contribute to a performance improvement of over 2% and 1% in linear evaluation compared to the previous NNCLR and All4One methods across multiple benchmark datasets such as CIFAR10, achieving state-of-the-art methods. On transfer learning benchmarks, CLSP outperforms existing SSL frameworks on 6 out of 8 downstream datasets. We believe CLSP establishes a valuable baseline for future SSL studies incorporating synthetic data in the training process.

cs.CV↗

arXiv2025

The Cost of Local and Global Fairness in Federated Learning

With the emerging application of Federated Learning (FL) in finance, hiring and healthcare, FL models are regulated to be fair, preventing disparities with respect to legally protected attributes such as race or gender. Two concepts of fairness are important in FL: global and local fairness. Global fairness addresses the disparity across the entire population and local fairness is concerned with the disparity within each client. Prior fair FL frameworks have improved either global or local fairness without considering both. Furthermore, while the majority of studies on fair FL focuses on binary settings, many real-world applications are multi-class problems. This paper proposes a framework that investigates the minimum accuracy lost for enforcing a specified level of global and local fairness in multi-class FL settings. Our framework leads to a simple post-processing algorithm that derives fair outcome predictors from the Bayesian optimal score functions. Experimental results show that our algorithm outperforms the current state of the art (SOTA) with regard to the accuracy-fairness tradoffs, computational and communication costs. Codes are available at: https://github.com/papersubmission678/The-cost-of-local-and-global-fairness-in-FL .

cs.LG↗

arXiv2025

QuEst: Graph Transformer for Quantum Circuit Reliability Estimation

Among different quantum algorithms, PQC for QML show promises on near-term devices. To facilitate the QML and PQC research, a recent python library called TorchQuantum has been released. It can construct, simulate, and train PQC for machine learning tasks with high speed and convenient debugging supports. Besides quantum for ML, we want to raise the community's attention on the reversed direction: ML for quantum. Specifically, the TorchQuantum library also supports using data-driven ML models to solve problems in quantum system research, such as predicting the impact of quantum noise on circuit fidelity and improving the quantum circuit compilation efficiency. This paper presents a case study of the ML for quantum part. Since estimating the noise impact on circuit reliability is an essential step toward understanding and mitigating noise, we propose to leverage classical ML to predict noise impact on circuit fidelity. Inspired by the natural graph representation of quantum circuits, we propose to leverage a graph transformer model to predict the noisy circuit fidelity. We firstly collect a large dataset with a variety of quantum circuits and obtain their fidelity on noisy simulators and real machines. Then we embed each circuit into a graph with gate and noise properties as node features, and adopt a graph transformer to predict the fidelity. Evaluated on 5 thousand random and algorithm circuits, the graph transformer predictor can provide accurate fidelity estimation with RMSE error 0.04 and outperform a simple neural network-based model by 0.02 on average. It can achieve 0.99 and 0.95 R$^2$ scores for random and algorithm circuits, respectively. Compared with circuit simulators, the predictor has over 200X speedup for estimating the fidelity.

quant-ph↗

arXiv2024

PI-Whisper: Designing an Adaptive and Incremental Automatic Speech Recognition System for Edge Devices

Edge-based automatic speech recognition (ASR) technologies are increasingly prevalent in the development of intelligent and personalized assistants. However, resource-constrained ASR models face significant challenges in adaptivity, incrementality, and inclusivity when faced with a diverse population. To tackle those challenges, we propose PI-Whisper, a novel ASR system that adaptively enhances recognition capabilities by identifying speakers' characteristics in real-time. In this work, we show how the design of PI-Whisper allows for incremental adaptation of new characteristics without the need for repetitive retraining, enhances recognition capabilities, and improves equity and fairness across diverse speaker groups. PI-Whisper demonstrates these advantages by achieving state-of-the-art accuracy, reducing the word error rate (WER) by up to 13.7% relative to baselines while scaling linearly to computing resources.

cs.CL↗

arXiv2024

Large Language Models have Intrinsic Self-Correction Ability

Large language models (LLMs) have attracted significant attention for their exceptional abilities in various natural language processing tasks, but they suffer from hallucinations that will cause performance degradation. One promising solution to improve the LLMs' performance is to ask LLMs to revise their answer after generation, a technique known as self-correction. Among the two types of self-correction, intrinsic self-correction is considered a promising direction because it does not utilize external knowledge. However, recent works doubt the validity of LLM's ability to conduct intrinsic self-correction. In this paper, we present a novel perspective on the intrinsic self-correction capabilities of LLMs through theoretical analyses and empirical experiments. In addition, we identify two critical factors for successful self-correction: zero temperature and fair prompts. Leveraging these factors, we demonstrate that intrinsic self-correction ability is exhibited across multiple existing LLMs. Our findings offer insights into the fundamental theories underlying the self-correction behavior of LLMs and remark on the importance of unbiased prompts and zero temperature settings in harnessing their full potential.

cs.CL↗

arXiv2024

MPBD-LSTM: A Predictive Model for Colorectal Liver Metastases Using Time Series Multi-phase Contrast-Enhanced CT Scans

Colorectal cancer is a prevalent form of cancer, and many patients develop colorectal cancer liver metastasis (CRLM) as a result. Early detection of CRLM is critical for improving survival rates. Radiologists usually rely on a series of multi-phase contrast-enhanced computed tomography (CECT) scans done during follow-up visits to perform early detection of the potential CRLM. These scans form unique five-dimensional data (time, phase, and axial, sagittal, and coronal planes in 3D CT). Most of the existing deep learning models can readily handle four-dimensional data (e.g., time-series 3D CT images) and it is not clear how well they can be extended to handle the additional dimension of phase. In this paper, we build a dataset of time-series CECT scans to aid in the early diagnosis of CRLM, and build upon state-of-the-art deep learning techniques to evaluate how to best predict CRLM. Our experimental results show that a multi-plane architecture based on 3D bi-directional LSTM, which we call MPBD-LSTM, works best, achieving an area under curve (AUC) of 0.79. On the other hand, analysis of the results shows that there is still great room for further improvement.

eess.IV↗

arXiv2024

NVCiM-PT: An NVCiM-assisted Prompt Tuning Framework for Edge LLMs

Large Language Models (LLMs) deployed on edge devices, known as edge LLMs, need to continuously fine-tune their model parameters from user-generated data under limited resource constraints. However, most existing learning methods are not applicable for edge LLMs because of their reliance on high resources and low learning capacity. Prompt tuning (PT) has recently emerged as an effective fine-tuning method for edge LLMs by only modifying a small portion of LLM parameters, but it suffers from user domain shifts, resulting in repetitive training and losing resource efficiency. Conventional techniques to address domain shift issues often involve complex neural networks and sophisticated training, which are incompatible for PT for edge LLMs. Therefore, an open research question is how to address domain shift issues for edge LLMs with limited resources. In this paper, we propose a prompt tuning framework for edge LLMs, exploiting the benefits offered by non-volatile computing-in-memory (NVCiM) architectures. We introduce a novel NVCiM-assisted PT framework, where we narrow down the core operations to matrix-matrix multiplication, which can then be accelerated by performing in-situ computation on NVCiM. To the best of our knowledge, this is the first work employing NVCiM to improve the edge LLM PT performance.

cs.LG↗

arXiv2024

A 10.60 $μ$W 150 GOPS Mixed-Bit-Width Sparse CNN Accelerator for Life-Threatening Ventricular Arrhythmia Detection

This paper proposes an ultra-low power, mixed-bit-width sparse convolutional neural network (CNN) accelerator to accelerate ventricular arrhythmia (VA) detection. The chip achieves 50% sparsity in a quantized 1D CNN using a sparse processing element (SPE) architecture. Measurement on the prototype chip TSMC 40nm CMOS low-power (LP) process for the VA classification task demonstrates that it consumes 10.60 $μ$W of power while achieving a performance of 150 GOPS and a diagnostic accuracy of 99.95%. The computation power density is only 0.57 $μ$W/mm$^2$, which is 14.23X smaller than state-of-the-art works, making it highly suitable for implantable and wearable medical devices.

cs.AR↗

arXiv2024

A comparison on constrain encoding methods for quantum approximate optimization algorithm

The Quantum Approximate Optimization Algorithm (QAOA) represents a significant opportunity for practical quantum computing applications, particularly in the era before error correction is fully realized. This algorithm is especially relevant for addressing constraint satisfaction problems (CSPs), which are critical in various fields such as supply chain management, energy distribution, and financial modeling. In our study, we conduct a numerical comparison of three different strategies for incorporating linear constraints into QAOA: transforming them into an unconstrained format, introducing penalty dephasing, and utilizing the quantum Zeno effect. We assess the efficiency and effectiveness of these methods using the knapsack problem as a case study. Our findings provide insights into the potential applicability of different encoding methods for various use cases.

quant-ph↗

arXiv2024

Empirical Guidelines for Deploying LLMs onto Resource-constrained Edge Devices

The scaling laws have become the de facto guidelines for designing large language models (LLMs), but they were studied under the assumption of unlimited computing resources for both training and inference. As LLMs are increasingly used as personalized intelligent assistants, their customization (i.e., learning through fine-tuning) and deployment onto resource-constrained edge devices will become more and more prevalent. An urging but open question is how a resource-constrained computing environment would affect the design choices for a personalized LLM. We study this problem empirically in this work. In particular, we consider the tradeoffs among a number of key design factors and their intertwined impacts on learning efficiency and accuracy. The factors include the learning methods for LLM customization, the amount of personalized data used for learning customization, the types and sizes of LLMs, the compression methods of LLMs, the amount of time afforded to learn, and the difficulty levels of the target use cases. Through extensive experimentation and benchmarking, we draw a number of surprisingly insightful guidelines for deploying LLMs onto resource-constrained devices. For example, an optimal choice between parameter learning and RAG may vary depending on the difficulty of the downstream task, the longer fine-tuning time does not necessarily help the model, and a compressed LLM may be a better choice than an uncompressed LLM to learn from limited personalized data.

cs.LG↗

arXiv2024

TSB: Tiny Shared Block for Efficient DNN Deployment on NVCIM Accelerators

Compute-in-memory (CIM) accelerators using non-volatile memory (NVM) devices offer promising solutions for energy-efficient and low-latency Deep Neural Network (DNN) inference execution. However, practical deployment is often hindered by the challenge of dealing with the massive amount of model weight parameters impacted by the inherent device variations within non-volatile computing-in-memory (NVCIM) accelerators. This issue significantly offsets their advantages by increasing training overhead, the time and energy needed for mapping weights to device states, and diminishing inference accuracy. To mitigate these challenges, we propose the "Tiny Shared Block (TSB)" method, which integrates a small shared 1x1 convolution block into the DNN architecture. This block is designed to stabilize feature processing across the network, effectively reducing the impact of device variation. Extensive experimental results show that TSB achieves over 20x inference accuracy gap improvement, over 5x training speedup, and weights-to-device mapping cost reduction while requiring less than 0.4% of the original weights to be write-verified during programming, when compared with state-of-the-art baseline solutions. Our approach provides a practical and efficient solution for deploying robust DNN models on NVCIM accelerators, making it a valuable contribution to the field of energy-efficient AI hardware.

cs.AR↗

arXiv2024

Enhancing 3D Transformer Segmentation Model for Medical Image with Token-level Representation Learning

In the field of medical images, although various works find Swin Transformer has promising effectiveness on pixelwise dense prediction, whether pre-training these models without using extra dataset can further boost the performance for the downstream semantic segmentation remains unexplored.Applications of previous representation learning methods are hindered by the limited number of 3D volumes and high computational cost. In addition, most of pretext tasks designed specifically for Transformer are not applicable to hierarchical structure of Swin Transformer. Thus, this work proposes a token-level representation learning loss that maximizes agreement between token embeddings from different augmented views individually instead of volume-level global features. Moreover, we identify a potential representation collapse exclusively caused by this new loss. To prevent collapse, we invent a simple "rotate-and-restore" mechanism, which rotates and flips one augmented view of input volume, and later restores the order of tokens in the feature maps. We also modify the contrastive loss to address the discrimination between tokens at the same position but from different volumes. We test our pre-training scheme on two public medical segmentation datasets, and the results on the downstream segmentation task show more improvement of our methods than other state-of-the-art pre-trainig methods.

cs.CV↗

arXiv2024

An Adaptive System for Wearable Devices to Detect Stress Using Physiological Signals

Timely stress detection is crucial for protecting vulnerable groups from long-term detrimental effects by enabling early intervention. Wearable devices, by collecting real-time physiological signals, offer a solution for accurate stress detection accommodating individual differences. This position paper introduces an adaptive framework for personalized stress detection using PPG and EDA signals. Unlike traditional methods that rely on a generalized model, which may suffer performance drops when applied to new users due to domain shifts, this framework aims to provide each user with a personalized model for higher stress detection accuracy. The framework involves three stages: developing a generalized model offline with an initial dataset, adapting the model to the user's unlabeled data, and fine-tuning it with a small set of labeled data obtained through user interaction. This approach not only offers a foundation for mobile applications that provide personalized stress detection and intervention but also has the potential to address a wider range of mental health issues beyond stress detection using physiological signals.

cs.CV↗

arXiv2024

Data-Algorithm-Architecture Co-Optimization for Fair Neural Networks on Skin Lesion Dataset

As Artificial Intelligence (AI) increasingly integrates into our daily lives, fairness has emerged as a critical concern, particularly in medical AI, where datasets often reflect inherent biases due to social factors like the underrepresentation of marginalized communities and socioeconomic barriers to data collection. Traditional approaches to mitigating these biases have focused on data augmentation and the development of fairness-aware training algorithms. However, this paper argues that the architecture of neural networks, a core component of Machine Learning (ML), plays a crucial role in ensuring fairness. We demonstrate that addressing fairness effectively requires a holistic approach that simultaneously considers data, algorithms, and architecture. Utilizing Automated ML (AutoML) technology, specifically Neural Architecture Search (NAS), we introduce a novel framework, BiaslessNAS, designed to achieve fair outcomes in analyzing skin lesion datasets. BiaslessNAS incorporates fairness considerations at every stage of the NAS process, leading to the identification of neural networks that are not only more accurate but also significantly fairer. Our experiments show that BiaslessNAS achieves a 2.55% increase in accuracy and a 65.50% improvement in fairness compared to traditional NAS methods, underscoring the importance of integrating fairness into neural network architecture for better outcomes in medical AI applications.

cs.LG↗