arXiv subjects

Yizhe Zhang

Publications and source records attributed to Yizhe Zhang.

At least 163 records · Page 9Linked to original sources

arXiv2019

Towards Generating Long and Coherent Text with Multi-Level Latent Variable Models

Variational autoencoders (VAEs) have received much attention recently as an end-to-end architecture for text generation with latent variables. In this paper, we investigate several multi-level structures to learn a VAE model to generate long, and coherent text. In particular, we use a hierarchy of stochastic layers between the encoder and decoder networks to generate more informative latent codes. We also investigate a multi-level decoder structure to learn a coherent long-term structure by generating intermediate sentence representations as high-level plan vectors. Empirical results demonstrate that a multi-level VAE model produces more coherent and less repetitive long text compared to the standard VAE models and can further mitigate the posterior-collapse issue.

cs.CL↗

arXiv2019

Decompose-and-Integrate Learning for Multi-class Segmentation in Medical Images

Segmentation maps of medical images annotated by medical experts contain rich spatial information. In this paper, we propose to decompose annotation maps to learn disentangled and richer feature transforms for segmentation problems in medical images. Our new scheme consists of two main stages: decompose and integrate. Decompose: by annotation map decomposition, the original segmentation problem is decomposed into multiple segmentation sub-problems; these new segmentation sub-problems are modeled by training multiple deep learning modules, each with its own set of feature transforms. Integrate: a procedure summarizes the solutions of the modules in the previous stage; a final solution is then formed for the original segmentation problem. Multiple ways of annotation map decomposition are presented and a new end-to-end trainable K-to-1 deep network framework is developed for implementing our proposed "decompose-and-integrate" learning scheme. In experiments, we demonstrate that our decompose-and-integrate segmentation, utilizing state-of-the-art fully convolutional networks (e.g., DenseVoxNet in 3D and CUMedNet in 2D), improves segmentation performance on multiple 3D and 2D datasets. Ablation study confirms the effectiveness of our proposed learning scheme for medical images.

eess.IV↗

arXiv2019

Improving Textual Network Embedding with Global Attention via Optimal Transport

Constituting highly informative network embeddings is an important tool for network analysis. It encodes network topology, along with other useful side information, into low-dimensional node-based feature representations that can be exploited by statistical modeling. This work focuses on learning context-aware network embeddings augmented with text data. We reformulate the network-embedding problem, and present two novel strategies to improve over traditional attention mechanisms: ($i$) a content-aware sparse attention module based on optimal transport, and ($ii$) a high-level attention parsing module. Our approach yields naturally sparse and self-normalized relational inference. It can capture long-term interactions between sequences, thus addressing the challenges faced by existing textual network embedding schemes. Extensive experiments are conducted to demonstrate our model can consistently outperform alternative state-of-the-art methods.

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arXiv2019

Towards Coherent and Cohesive Long-form Text Generation

Generating coherent and cohesive long-form texts is a challenging task. Previous works relied on large amounts of human-generated texts to train neural language models. However, few attempted to explicitly improve neural language models from the perspectives of coherence and cohesion. In this work, we propose a new neural language model that is equipped with two neural discriminators which provide feedback signals at the levels of sentence (cohesion) and paragraph (coherence). Our model is trained using a simple yet efficient variant of policy gradient, called negative-critical sequence training, which is proposed to eliminate the need of training a separate critic for estimating baseline. Results demonstrate the effectiveness of our approach, showing improvements over the strong baseline -- recurrent attention-based bidirectional MLE-trained neural language model.

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arXiv2019

Jointly Optimizing Diversity and Relevance in Neural Response Generation

Although recent neural conversation models have shown great potential, they often generate bland and generic responses. While various approaches have been explored to diversify the output of the conversation model, the improvement often comes at the cost of decreased relevance. In this paper, we propose a SpaceFusion model to jointly optimize diversity and relevance that essentially fuses the latent space of a sequence-to-sequence model and that of an autoencoder model by leveraging novel regularization terms. As a result, our approach induces a latent space in which the distance and direction from the predicted response vector roughly match the relevance and diversity, respectively. This property also lends itself well to an intuitive visualization of the latent space. Both automatic and human evaluation results demonstrate that the proposed approach brings significant improvement compared to strong baselines in both diversity and relevance.

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arXiv2019

SPDA: Superpixel-based Data Augmentation for Biomedical Image Segmentation

Supervised training a deep neural network aims to "teach" the network to mimic human visual perception that is represented by image-and-label pairs in the training data. Superpixelized (SP) images are visually perceivable to humans, but a conventionally trained deep learning model often performs poorly when working on SP images. To better mimic human visual perception, we think it is desirable for the deep learning model to be able to perceive not only raw images but also SP images. In this paper, we propose a new superpixel-based data augmentation (SPDA) method for training deep learning models for biomedical image segmentation. Our method applies a superpixel generation scheme to all the original training images to generate superpixelized images. The SP images thus obtained are then jointly used with the original training images to train a deep learning model. Our experiments of SPDA on four biomedical image datasets show that SPDA is effective and can consistently improve the performance of state-of-the-art fully convolutional networks for biomedical image segmentation in 2D and 3D images. Additional studies also demonstrate that SPDA can practically reduce the generalization gap.

cs.CV↗

arXiv2019

Improving Sequence-to-Sequence Learning via Optimal Transport

Sequence-to-sequence models are commonly trained via maximum likelihood estimation (MLE). However, standard MLE training considers a word-level objective, predicting the next word given the previous ground-truth partial sentence. This procedure focuses on modeling local syntactic patterns, and may fail to capture long-range semantic structure. We present a novel solution to alleviate these issues. Our approach imposes global sequence-level guidance via new supervision based on optimal transport, enabling the overall characterization and preservation of semantic features. We further show that this method can be understood as a Wasserstein gradient flow trying to match our model to the ground truth sequence distribution. Extensive experiments are conducted to validate the utility of the proposed approach, showing consistent improvements over a wide variety of NLP tasks, including machine translation, abstractive text summarization, and image captioning.

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arXiv2019

Cascade Decoder: A Universal Decoding Method for Biomedical Image Segmentation

The Encoder-Decoder architecture is a main stream deep learning model for biomedical image segmentation. The encoder fully compresses the input and generates encoded features, and the decoder then produces dense predictions using encoded features. However, decoders are still under-explored in such architectures. In this paper, we comprehensively study the state-of-the-art Encoder-Decoder architectures, and propose a new universal decoder, called cascade decoder, to improve semantic segmentation accuracy. Our cascade decoder can be embedded into existing networks and trained altogether in an end-to-end fashion. The cascade decoder structure aims to conduct more effective decoding of hierarchically encoded features and is more compatible with common encoders than the known decoders. We replace the decoders of state-of-the-art models with our cascade decoder for several challenging biomedical image segmentation tasks, and the considerable improvements achieved demonstrate the efficacy of our new decoding method.

cs.CV↗

arXiv2018

A New Ensemble Learning Framework for 3D Biomedical Image Segmentation

3D image segmentation plays an important role in biomedical image analysis. Many 2D and 3D deep learning models have achieved state-of-the-art segmentation performance on 3D biomedical image datasets. Yet, 2D and 3D models have their own strengths and weaknesses, and by unifying them together, one may be able to achieve more accurate results. In this paper, we propose a new ensemble learning framework for 3D biomedical image segmentation that combines the merits of 2D and 3D models. First, we develop a fully convolutional network based meta-learner to learn how to improve the results from 2D and 3D models (base-learners). Then, to minimize over-fitting for our sophisticated meta-learner, we devise a new training method that uses the results of the base-learners as multiple versions of "ground truths". Furthermore, since our new meta-learner training scheme does not depend on manual annotation, it can utilize abundant unlabeled 3D image data to further improve the model. Extensive experiments on two public datasets (the HVSMR 2016 Challenge dataset and the mouse piriform cortex dataset) show that our approach is effective under fully-supervised, semi-supervised, and transductive settings, and attains superior performance over state-of-the-art image segmentation methods.

cs.CV↗

arXiv2018

Generating Informative and Diverse Conversational Responses via Adversarial Information Maximization

Responses generated by neural conversational models tend to lack informativeness and diversity. We present Adversarial Information Maximization (AIM), an adversarial learning strategy that addresses these two related but distinct problems. To foster response diversity, we leverage adversarial training that allows distributional matching of synthetic and real responses. To improve informativeness, our framework explicitly optimizes a variational lower bound on pairwise mutual information between query and response. Empirical results from automatic and human evaluations demonstrate that our methods significantly boost informativeness and diversity.

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arXiv2018

JointGAN: Multi-Domain Joint Distribution Learning with Generative Adversarial Nets

A new generative adversarial network is developed for joint distribution matching. Distinct from most existing approaches, that only learn conditional distributions, the proposed model aims to learn a joint distribution of multiple random variables (domains). This is achieved by learning to sample from conditional distributions between the domains, while simultaneously learning to sample from the marginals of each individual domain. The proposed framework consists of multiple generators and a single softmax-based critic, all jointly trained via adversarial learning. From a simple noise source, the proposed framework allows synthesis of draws from the marginals, conditional draws given observations from a subset of random variables, or complete draws from the full joint distribution. Most examples considered are for joint analysis of two domains, with examples for three domains also presented.

cs.LG↗

arXiv2018

BoxNet: Deep Learning Based Biomedical Image Segmentation Using Boxes Only Annotation

In recent years, deep learning (DL) methods have become powerful tools for biomedical image segmentation. However, high annotation efforts and costs are commonly needed to acquire sufficient biomedical training data for DL models. To alleviate the burden of manual annotation, in this paper, we propose a new weakly supervised DL approach for biomedical image segmentation using boxes only annotation. First, we develop a method to combine graph search (GS) and DL to generate fine object masks from box annotation, in which DL uses box annotation to compute a rough segmentation for GS and then GS is applied to locate the optimal object boundaries. During the mask generation process, we carefully utilize information from box annotation to filter out potential errors, and then use the generated masks to train an accurate DL segmentation network. Extensive experiments on gland segmentation in histology images, lymph node segmentation in ultrasound images, and fungus segmentation in electron microscopy images show that our approach attains superior performance over the best known state-of-the-art weakly supervised DL method and is able to achieve (1) nearly the same accuracy compared to fully supervised DL methods with far less annotation effort, (2) significantly better results with similar annotation time, and (3) robust performance in various applications.

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arXiv2018

Baseline Needs More Love: On Simple Word-Embedding-Based Models and Associated Pooling Mechanisms

Many deep learning architectures have been proposed to model the compositionality in text sequences, requiring a substantial number of parameters and expensive computations. However, there has not been a rigorous evaluation regarding the added value of sophisticated compositional functions. In this paper, we conduct a point-by-point comparative study between Simple Word-Embedding-based Models (SWEMs), consisting of parameter-free pooling operations, relative to word-embedding-based RNN/CNN models. Surprisingly, SWEMs exhibit comparable or even superior performance in the majority of cases considered. Based upon this understanding, we propose two additional pooling strategies over learned word embeddings: (i) a max-pooling operation for improved interpretability; and (ii) a hierarchical pooling operation, which preserves spatial (n-gram) information within text sequences. We present experiments on 17 datasets encompassing three tasks: (i) (long) document classification; (ii) text sequence matching; and (iii) short text tasks, including classification and tagging. The source code and datasets can be obtained from https:// github.com/dinghanshen/SWEM.

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arXiv2018

Joint Embedding of Words and Labels for Text Classification

Word embeddings are effective intermediate representations for capturing semantic regularities between words, when learning the representations of text sequences. We propose to view text classification as a label-word joint embedding problem: each label is embedded in the same space with the word vectors. We introduce an attention framework that measures the compatibility of embeddings between text sequences and labels. The attention is learned on a training set of labeled samples to ensure that, given a text sequence, the relevant words are weighted higher than the irrelevant ones. Our method maintains the interpretability of word embeddings, and enjoys a built-in ability to leverage alternative sources of information, in addition to input text sequences. Extensive results on the several large text datasets show that the proposed framework outperforms the state-of-the-art methods by a large margin, in terms of both accuracy and speed.

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arXiv2018

A New Registration Approach for Dynamic Analysis of Calcium Signals in Organs

Wing disc pouches of fruit flies are a powerful genetic model for studying physiological intercellular calcium ($Ca^{2+}$) signals for dynamic analysis of cell signaling in organ development and disease studies. A key to analyzing spatial-temporal patterns of $Ca^{2+}$ signal waves is to accurately align the pouches across image sequences. However, pouches in different image frames may exhibit extensive intensity oscillations due to $Ca^{2+}$ signaling dynamics, and commonly used multimodal non-rigid registration methods may fail to achieve satisfactory results. In this paper, we develop a new two-phase non-rigid registration approach to register pouches in image sequences. First, we conduct segmentation of the region of interest. (i.e., pouches) using a deep neural network model. Second, we obtain an optimal transformation and align pouches across the image sequences. Evaluated using both synthetic data and real pouch data, our method considerably outperforms the state-of-the-art non-rigid registration methods.

cs.CV↗

arXiv2018

Towards Unifying Hamiltonian Monte Carlo and Slice Sampling

We unify slice sampling and Hamiltonian Monte Carlo (HMC) sampling, demonstrating their connection via the Hamiltonian-Jacobi equation from Hamiltonian mechanics. This insight enables extension of HMC and slice sampling to a broader family of samplers, called Monomial Gamma Samplers (MGS). We provide a theoretical analysis of the mixing performance of such samplers, proving that in the limit of a single parameter, the MGS draws decorrelated samples from the desired target distribution. We further show that as this parameter tends toward this limit, performance gains are achieved at a cost of increasing numerical difficulty and some practical convergence issues. Our theoretical results are validated with synthetic data and real-world applications.

stat.ML↗

arXiv2018

Stochastic Gradient Monomial Gamma Sampler

Recent advances in stochastic gradient techniques have made it possible to estimate posterior distributions from large datasets via Markov Chain Monte Carlo (MCMC). However, when the target posterior is multimodal, mixing performance is often poor. This results in inadequate exploration of the posterior distribution. A framework is proposed to improve the sampling efficiency of stochastic gradient MCMC, based on Hamiltonian Monte Carlo. A generalized kinetic function is leveraged, delivering superior stationary mixing, especially for multimodal distributions. Techniques are also discussed to overcome the practical issues introduced by this generalization. It is shown that the proposed approach is better at exploring complex multimodal posterior distributions, as demonstrated on multiple applications and in comparison with other stochastic gradient MCMC methods.

stat.ML↗

arXiv2017

Deconvolutional Latent-Variable Model for Text Sequence Matching

A latent-variable model is introduced for text matching, inferring sentence representations by jointly optimizing generative and discriminative objectives. To alleviate typical optimization challenges in latent-variable models for text, we employ deconvolutional networks as the sequence decoder (generator), providing learned latent codes with more semantic information and better generalization. Our model, trained in an unsupervised manner, yields stronger empirical predictive performance than a decoder based on Long Short-Term Memory (LSTM), with less parameters and considerably faster training. Further, we apply it to text sequence-matching problems. The proposed model significantly outperforms several strong sentence-encoding baselines, especially in the semi-supervised setting.

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