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Zhiyuan Ning

Publications and source records attributed to Zhiyuan Ning.

At least 19 recordsLinked to original sources
arXiv2026

ProSearch: Benchmarking Multi-Constraint Protocol Retrieval in Experimental Science

In AI for Science scenarios, experimental design and method reproduction require retrieving protocols that satisfy multiple interdependent constraints, yet existing benchmarks lack systematic evaluation of this capability. To address this gap, we introduce ProSearch, a benchmark for multi-constraint protocol retrieval in experimental science. ProSearch has three key features: (1) realism, with queries grounded in real experimental records and expert-defined templates; (2) complexity, with 60 experimental fields and their dependencies; and (3) diagnosticity, with 3-5 explicit constraints per query, including numerical and negation constraints. We construct ProSearch through LLM-based extraction, data-driven constraint selection, controlled query generation, and evidence-based relevance validation. The resulting benchmark contains 1,515 queries across six experimental science domains. We conduct extensive experiments on ProSearch with 19 representative retrievers and complementary analyses. The best-performing retriever achieves an average nDCG@10 of only 0.290, which improves to 0.474 with reranking. Structured diagnostic analysis shows that explicit constraint matching provides a strong ranking signal, while manual error analysis identifies joint constraint binding as a key bottleneck. ProSearch provides a testbed for systematically evaluating scientific retrieval systems.

cs.IR↗
arXiv2026

ABNAT: Attention-Based Noise-Aware Training for Robust Transformers on Analog Compute-in-Memory Systems

Transformer-based models have become the backbone of a wide range of tasks, but their intensive computation and data movement incur substantial energy overhead. Analog compute-in-memory (CIM) offers an energy-efficient alternative, yet its inherent hardware non-idealities perturb stored weights and can significantly degrade model performance. Although existing noise-aware training (NAT) methods improve robustness by injecting noise during training, they largely overlook the critical role of attention mechanisms in Transformer inference.To bridge this gap, we analyze how CIM-induced noise reshapes attention in Transformers and identify two key observations: (1) the divergence between clean and noisy attention maps increases substantially in deeper layers, and (2) conventional NAT can remain overconfident even when its attention routes deviate markedly from the clean reference. Motivated by these findings, we propose ABNAT, an attention-based noise-aware training framework that teaches the noisy student to preserve the clean teacher's headwise attention routes rather than merely reproduce answers, without hardware changes or inference overhead; selective variants further reduce training cost.Extensive experiments across vision, language, and multimodal Transformers show that ABNAT consistently improves robustness over corresponding NAT baselines, improving noise-degraded accuracy by up to 11.28% and reducing attention deviation by up to 85.77%.

cs.LG↗
arXiv2026

CAFE: Conducting-Cell-Aware Adaptive Differential Encoding for Robust DNN Inference in FeFET-Based Compute-in-Memory

Ferroelectric field-effect transistor (FeFET)-based compute-in-memory (CIM) promises energy-efficient deep neural network (DNN) inference, but device variation can severely degrade bit-sliced CIM accuracy. Prior works either rely on hardware modifications or treat such variation as generic noise, overlooking a key FeFET asymmetry: negligible off-state leakage makes errors dominated by conducting on-state cells. This asymmetry is amplified by two's-complement sign extension, which maps small negative values to high-significance bit slices and magnifies their errors during shift-and-add reconstruction. In this paper, we propose CAFE, a conducting-cell-aware adaptive differential encoding framework built upon this FeFET-specific asymmetry. CAFE introduces C$^2$AM, a bit-significance-weighted conducting-cell activity metric that predicts output deviation and inference accuracy degradation under FeFET device variation. Guided by C$^2$AM, CAFE applies differential weight and activation encoding to eliminate sign-extension-induced conducting-cell amplification. To balance robustness and cost, CAFE performs type-wise encoding enumeration, layer-wise NSGA-II search, and post-GA pruning to allocate robust encodings where the robustness-cost trade-off is favorable. Across representative vision and language workloads, CAFE reduces C$^2$AM by up to $28.6\times$; in the main deployment study, it improves accuracy over two's-complement CIM by more than 87 percentage points and approaches full-differential robustness at $1.86$-$2.78\times$ normalized cost, compared with $3.06\times$ for uniform full-differential encoding.

cs.AR↗
arXiv2026

RATL: Learning from Retrieved Residuals for Robust Multivariate Time-Series Forecasting

Retrieval-augmented generation (RAG) complements parametric models with retrieved external evidence. The same idea is attractive for continuous-output regression, but directly reusing retrieved target values is often not robust when samples differ in output level, numerical scale, or local dynamics. Moreover, conventional forecasting pipelines generally use residuals for model optimization and error diagnosis, but do not retain individual historical residual examples as memory that can be accessed at inference time.For multivariate time-series forecasting, we propose RATL, a plug-in residual-retrieval and feedback-correction method. RATL freezes a base forecaster to construct retrieval keys and turns its historical forecast residuals into a train-only memory specific to that base model. At inference time, RATL retrieves residual trajectories from similar historical contexts subject to causal availability constraints, then uses a set-aware router operating over forecast blocks and variables to select and combine these trajectories. Experiments show that historical residuals matched to the current context contain reusable forecasting information and that RATL improves frozen base forecasters in most experimental settings. Ablations further show that learned routing strengthens raw residual feedback, while validation-based correction-strength selection limits residual over-injection.On real-world benchmarks, we use iTransformer as the primary frozen base forecaster, compare against multiple strong forecasting baselines, and test transferability across backbones. The results show that RATL can further improve base-forecaster performance in most settings.Overall, RATL shifts the retrieved object from historical target values to base-model-specific historical forecast errors, providing a plug-in, residual-memory-based paradigm for learned feedback correction in continuous-output forecasting.

cs.LG↗
arXiv2026

Para-Pipe: Exploiting Hierarchical Operator Parallelism of ML Computational Graphs on SoCs

As edge-based deep learning applications become more complex, optimizing performance on heterogeneous System-on-Chips (SoCs) presents unique challenges. Traditional pipelining techniques distributing the computation across different on-chip processing units, while effective for throughput, do not address the latency demands posed by modern neural networks with complex interdependencies and extensive operator parallelism. There is a potential in leveraging operator parallelism to enable concurrent execution across multiple processing units, thereby reducing inference latency. However, prioritizing pipelining or parallel execution often necessitates a compromise, where optimizing one performance metric adversely impacts the other. This paper introduces Para-Pipe, a hierarchical mapping framework that integrates intra- and inter-stage operator parallelism within a pipelined architecture. Para-Pipe navigates the trade-off between throughput and latency by selectively fine-tuning parallelism levels within and across pipeline stages. This strategy can significantly reduce inter-processor communication overhead, significantly improving energy efficiency. Our evaluation demonstrates that Para-Pipe generates multiple Pareto-optimal configurations, achieving a balance between throughput and latency on an Amlogic SoC equipped with ARM big.LITTLE CPUs and GPU, as well as the Black Sesame Technology SoC featuring a deep learning accelerator and two DSPs. More importantly, throughput-optimized configurations under Para-Pipe on Amlogic SoC show an average energy efficiency improvement of 11.0% over purely pipelined strategies and 23.3% relative to non-pipelined parallel execution.

cs.DC↗
arXiv2026

Faster Than Flash: Exploiting Attention Sparsity for Efficient Long-Context Decoding

The development of long-context Large Language Models (LLMs) is constrained by the memory bandwidth bottleneck and quadratic complexity of the attention mechanism during decoding. To overcome the inherent trade-offs between the memory overhead of metadata-based metrics and the computational inefficiency of adaptive selection strategies, we present Faster Flash Decoding (FFD), a novel hardware-algorithm co-design framework designed to break the memory wall in long-context decoding. FFD integrates the selector and computer into a fully fused kernel, replacing external metadata indices with content-aware scanning via low-bit quantization. Furthermore, we introduce the top-delta strategy, which dynamically filters blocks to achieve distribution-adaptive sparsity without global synchronization. Offering a training-free and plug-and-play solution, FFD also enables the reuse of scanning results for computation, achieving up to 11.6x kernel-level speedup and scaling to 256K context length, with 2.37x end-to-end throughput improvement. Empirical validation on RULER and LongBench confirms that FFD maintains model accuracy while delivering high-ratio sparsity, with code available at https://github.com/qluoluo/faster-flash-decoding

cs.LG↗
arXiv2026

FeedbackTrack: Visual-Cortex-Inspired Cross-Frame Feedback for Transformer Tracking

Visual object tracking requires effective temporal integration, yet most Transformer trackers still rely on predominantly feed-forward feature extraction. Existing temporal mechanisms typically update templates, prompts, queries, or prediction states, while intermediate representations are rarely reused to modulate corresponding processing stages. We propose \textbf{FeedbackTrack}, a visual-cortex-inspired framework that introduces sparse, group-level layer-aligned cross-frame feedback into pretrained Transformer trackers. Previous-frame intermediate states are detached, cached, and returned to corresponding Transformer groups in the current frame through two lightweight pathways: Query Feedback for token-level query modulation and Gate Feedback for context-dependent feature modulation. FeedbackTrack preserves the original tracking pipeline with only a fixed-size one-frame cache. Across SPMTrack and ARTrackV2, FeedbackTrack consistently improves five backbone configurations on LaSOT and GOT-10k, achieving 83.4 AO and 79.1 AUC with SPMTrack-G while adding less than 1\% parameters. Controlled comparisons show that cross-frame feedback outperforms same-frame modulation by 1.8--3.2 AO points, demonstrating that the gains mainly come from recurrent historical information. Further analysis reveals a non-uniform depth-dependent organization of learned feedback strengths, highlighting the effectiveness of recurrent feedback for Transformer tracking.

cs.CV↗
arXiv2026

Recall Before You Rank: Similarity-Guided Top-$K$ Reuse for Efficient Long-Context Attention

Top-$K$ sparse attention reduces the cost of Softmax and value aggregation by attending to only a small subset of key--value (KV) entries. However, identifying this subset still requires scoring the current query against the full KV cache and performing global Top-$K$ selection, leaving selector cost linear in context length and limiting the practical efficiency of sparse attention for long-context decoding. In this paper, we introduce ReTopK, a training-free method that accelerates dynamic Top-$K$ attention by reusing historical retrieval decisions. ReTopK builds on the observation that similar queries often attend to overlapping supports and that partially overlapping supports can still preserve most of the Exact Top-$K$ attention mass. For each attention head, it maintains a bounded cache of historical query--support pairs, retrieves the most similar cached queries for each new query, unions their stored supports with a recent window, and reranks only the resulting compact candidate set using exact current-query scores. A similarity-based fallback invokes full-history Exact Top-$K$ when reuse is unreliable, while periodic exact refreshes limit cache drift. ReTopK retains the complete KV cache and reuses only selected indices, rather than historical scores, attention weights, or outputs. Across 16K--128K contexts, ReTopK achieves the lowest PG19 perplexity and the highest NIAH and LongBench scores among the evaluated approximate methods. At 128K with $K=512$, ReTopK incurs only a 0.50\% perplexity increase over Exact Top-$K$ while accelerating attention computation by $3.07\times$.

cs.CL↗
arXiv2026

scLLM-DSC: LLM-Knowledge Enhanced Cross-Modal Deep Structural Clustering for Single-Cell RNA Sequencing

Clustering is fundamental to scRNA-seq analysis, serving as a cornerstone for identifying cell populations and resolving tissue heterogeneity. However, existing methods focus on mining numerical statistical patterns, suffering from semantic agnosticism by neglecting the intrinsic biological functions encoded by genes. While Large Language Models (LLMs) offer promising semantic capabilities, their direct adaptation to cell clustering is hindered by the structural mismatch between generative pre-training objectives and discriminative downstream tasks. To bridge this gap, we propose scLLM-DSC, a novel LLM-Knowledge Enhanced Cross-Modal Deep Structural Clustering framework. Diverging from data-driven paradigms, scLLM-DSC establishes a semantically-grounded representation by synergizing two views: a Knowledge-Driven Semantic View derived from NCBI gene priors and contextualized Cell2Sentence embeddings, and a Structure-Aware Topological View extracted via a graph-guided encoder. Crucially, we introduce a cross-modal contrastive alignment mechanism to enforce consistency between biological semantics and transcriptomic features within a unified latent space. Extensive benchmarks demonstrate that scLLM-DSC significantly outperforms eleven state-of-the-art baselines in clustering accuracy.

cs.LG↗
arXiv2026

Before the Mic: Physical-Layer Voiceprint Anonymization with Acoustic Metamaterials

Voiceprints are widely used for authentication; however, they are easily captured in public settings and cannot be revoked once leaked. Existing anonymization systems operate inside recording devices, which makes them ineffective when microphones or software are untrusted, as in conference rooms, lecture halls, and interviews. We present EchoMask, the first practical physical-layer system for real-time voiceprint anonymization using acoustic metamaterials. By modifying sound waves before they reach the microphone, EchoMask prevents attackers from capturing clean voiceprints through compromised devices. Our design combines three key innovations: frequency-selective interference to disrupt voiceprint features while preserving speech intelligibility, an acoustic-field model to ensure stability under speaker movement, and reconfigurable structures that create time-varying interference to prevent learning or canceling a fixed acoustic pattern. EchoMask is low-cost, power-free, and 3D-printable, requiring no machine learning, software support, or microphone modification. Experiments conducted across eight microphones in diverse environments demonstrate that EchoMask increases the Miss-match Rate, i.e., the fraction of failed voiceprint matching attempts, to over 90%, while maintaining high speech intelligibility.

cs.SD↗
arXiv2026

Beyond Paper-to-Paper: Structured Profiling and Rubric Scoring for Paper-Reviewer Matching

As conference submission volumes continue to grow, accurately recommending suitable reviewers has become a challenge. Most existing methods follow a ``Paper-to-Paper'' matching paradigm, implicitly representing a reviewer by their publication history. However, effective reviewer matching requires capturing multi-dimensional expertise, and textual similarity to past papers alone is often insufficient. To address this gap, we propose P2R, a training-free framework that shifts from implicit paper-to-paper matching to explicit profile-based matching. P2R uses general-purpose LLMs to construct structured profiles for both submissions and reviewers, disentangling them into Topics, Methodologies, and Applications. Building on these profiles, P2R adopts a coarse-to-fine pipeline to balance efficiency and depth. It first performs hybrid retrieval that combines semantic and aspect-level signals to form a high-recall candidate pool, and then applies an LLM-based committee to evaluate candidates under strict rubrics, integrating both multi-dimensional expert views and a holistic Area Chair perspective. Experiments on NeurIPS, SIGIR, and SciRepEval show that P2R consistently outperforms state-of-the-art baselines. Ablation studies further verify the necessity of each component. Overall, P2R highlights the value of explicit, structured expertise modeling and offers practical guidance for applying LLMs to reviewer matching.

cs.IR↗
arXiv2026

A Comprehensive Survey on Vector Database: Storage and Retrieval Technique, Challenge

As high-dimensional vector data increasingly surpasses the processing capabilities of traditional database management systems, Vector Databases (VDBs) have emerged and become tightly integrated with large language models, being widely applied in modern artificial intelligence systems. However, existing research has primarily focused on underlying technologies such as approximate nearest neighbor search, with relatively few studies providing a systematic architectural-level review of VDBs or analyzing how these core technologies collectively support the overall capacity of VDBs. This survey aims to offer a comprehensive overview of the core designs and algorithms of VDBs, establishing a holistic understanding of this rapidly evolving field. First, we systematically review the key technologies and design principles of VDBs from the two core dimensions of storage and retrieval, tracing their technological evolution. Next, we conduct an in-depth comparison of several mainstream VDB architectures, summarizing their strengths, limitations, and typical application scenarios. Finally, we explore emerging directions for integrating VDBs with large language models, including open research challenges and trends such as novel indexing strategies. This survey serves as a systematic reference guide for researchers and practitioners, helping readers quickly grasp the technological landscape and development trends in the field of vector databases, and promoting further innovation in both theoretical and applied aspects.

cs.DB↗
arXiv2026

Graph-GRPO: Stabilizing Multi-Agent Topology Learning via Group Relative Policy Optimization

Optimizing communication topology is fundamental to the efficiency and effectiveness of Large Language Model (LLM)-based Multi-Agent Systems (MAS). While recent approaches utilize reinforcement learning to dynamically construct task-specific graphs, they typically rely on single-sample policy gradients with absolute rewards (e.g., binary correctness). This paradigm suffers from severe gradient variance and the credit assignment problem: simple queries yield non-informative positive rewards for suboptimal structures, while difficult queries often result in failures that provide no learning signal. To address these challenges, we propose Graph-GRPO, a novel topology optimization framework that integrates Group Relative Policy Optimization. Instead of evaluating a single topology in isolation, Graph-GRPO samples a group of diverse communication graphs for each query and computes the advantage of specific edges based on their relative performance within the group. By normalizing rewards across the sampled group, our method effectively mitigates the noise derived from task difficulty variance and enables fine-grained credit assignment. Extensive experiments on reasoning and code generation benchmarks demonstrate that Graph-GRPO significantly outperforms state-of-the-art baselines, achieving superior training stability and identifying critical communication pathways previously obscured by reward noise.

cs.CL↗
arXiv2026

AutoFigure-Edit: Generating Editable Scientific Illustration

High-quality scientific illustrations are essential for communicating complex scientific and technical concepts, yet existing automated systems remain limited in editability, stylistic controllability, and efficiency. We present AutoFigure-Edit, an end-to-end system that generates fully editable scientific illustrations from long-form scientific text while enabling flexible style adaptation through user-provided reference images. By combining long-context understanding, reference-guided styling, and native SVG editing, it enables efficient creation and refinement of high-quality scientific illustrations. To facilitate further progress in this field, we release the video at https://youtu.be/10IH8SyJjAQ, full codebase at https://github.com/ResearAI/AutoFigure-Edit and provide a website for easy access and interactive use at https://deepscientist.cc/.

cs.CV↗
arXiv2026

DeepReviewer 2.0: A Traceable Agentic System for Auditable Scientific Peer Review

Automated peer review is often framed as generating fluent critique, yet reviewers and area chairs need judgments they can \emph{audit}: where a concern applies, what evidence supports it, and what concrete follow-up is required. DeepReviewer~2.0 is a process-controlled agentic review system built around an output contract: it produces a \textbf{traceable review package} with anchored annotations, localized evidence, and executable follow-up actions, and it exports only after meeting minimum traceability and coverage budgets. Concretely, it first builds a manuscript-only claim--evidence--risk ledger and verification agenda, then performs agenda-driven retrieval and writes anchored critiques under an export gate. On 134 ICLR~2025 submissions under three fixed protocols, an \emph{un-finetuned 196B} model running DeepReviewer~2.0 outperforms Gemini-3.1-Pro-preview, improving strict major-issue coverage (37.26\% vs.\ 23.57\%) and winning 71.63\% of micro-averaged blind comparisons against a human review committee, while ranking first among automatic systems in our pool. We position DeepReviewer~2.0 as an assistive tool rather than a decision proxy, and note remaining gaps such as ethics-sensitive checks.

cs.AI↗
arXiv2026

MOVA: Towards Scalable and Synchronized Video-Audio Generation

Audio is indispensable for real-world video, yet generation models have largely overlooked audio components. Current approaches to producing audio-visual content often rely on cascaded pipelines, which increase cost, accumulate errors, and degrade overall quality. While systems such as Veo 3 and Sora 2 emphasize the value of simultaneous generation, joint multimodal modeling introduces unique challenges in architecture, data, and training. Moreover, the closed-source nature of existing systems limits progress in the field. In this work, we introduce MOVA (MOSS Video and Audio), an open-source model capable of generating high-quality, synchronized audio-visual content, including realistic lip-synced speech, environment-aware sound effects, and content-aligned music. MOVA employs a Mixture-of-Experts (MoE) architecture, with a total of 32B parameters, of which 18B are active during inference. It supports IT2VA (Image-Text to Video-Audio) generation task. By releasing the model weights and code, we aim to advance research and foster a vibrant community of creators. The released codebase features comprehensive support for efficient inference, LoRA fine-tuning, and prompt enhancement.

cs.CV↗
arXiv2026

SuperEar: Eavesdropping on Mobile Voice Calls via Stealthy Acoustic Metamaterials

Acoustic eavesdropping is a privacy risk, but existing attacks rarely work in real outdoor situations where people make phone calls on the move. We present SuperEar, the first portable system that uses acoustic metamaterials to reliably capture conversations in these scenarios. We show that the threat is real as a practical prototype can be implemented to enhance faint signals, cover the full range of speech with a compact design, and reduce noise and distortion to produce clear audio. We show that SuperEar can be implemented from low-cost 3D-printed parts and off-the-shelf hardware. Experimental results show that SuperEar can recover phone call audio with a success rate of over 80% at distances of up to 4.6 m - more than twice the range of previous approaches. Our findings highlight a new class of privacy threats enabled by metamaterial technology that requires attention.

cs.SD↗
arXiv2026

Breaking Model Lock-in: Cost-Efficient Zero-Shot LLM Routing via a Universal Latent Space

The rapid proliferation of Large Language Models (LLMs) has led to a fragmented and inefficient ecosystem, a state of ``model lock-in'' where seamlessly integrating novel models remains a significant bottleneck. Current routing frameworks require exhaustive, costly retraining, hindering scalability and adaptability. We introduce ZeroRouter, a new paradigm for LLM routing that breaks this lock-in. Our approach is founded on a universal latent space, a model-agnostic representation of query difficulty that fundamentally decouples the characterization of a query from the profiling of a model. This allows for zero-shot onboarding of new models without full-scale retraining. ZeroRouter features a context-aware predictor that maps queries to this universal space and a dual-mode optimizer that balances accuracy, cost, and latency. Our framework consistently outperforms all baselines, delivering higher accuracy at lower cost and latency.

cs.LG↗