arXiv subjects

Ziqi Xu

Publications and source records attributed to Ziqi Xu.

At least 37 records · Page 2Linked to original sources

arXiv2026

PrimeKG-CL: A Continual Graph Learning Benchmark on Evolving Biomedical Knowledge Graphs

Biomedical knowledge graphs underwrite drug repurposing and clinical decision support, yet the upstream ontologies they depend on update on independent cycles that add millions of edges and deprecate hundreds of thousands more between releases. Yet existing continual graph learning has been studied almost exclusively on synthetic random splits of static, generic KGs, a regime that cannot reproduce the asynchronous, structured evolution real biomedical KGs undergo. To this end, we introduce PrimeKG-CL, a CGL benchmark built from nine authoritative biomedical databases (129K+ nodes, 8.1M+ edges, 10 node types, 30 relation types) with two genuine temporal snapshots (June 2021, July 2023; 5.83M edges added, 889K removed, 7.21M persistent), 10 entity-type-grouped tasks, multimodal node features, and a per-task persistent/added/removed test stratification. On three tasks (biomedical relationship prediction, entity classification, KGQA), we evaluate six CL strategies across four KGE decoders, plus LKGE, an LLM-RAG agent, and CMKL. We find that decoder choice and continual learning strategy interact strongly: no single strategy performs best across all decoders, and mismatched combinations can significantly degrade performance. Moreover, only DistMult exhibits a clear separation between persistent and deprecated knowledge, indicating that standard metrics conflate retention of still-valid facts with failure to forget outdated ones; this effect is absent under RotatE. In addition, multimodal features improve entity-level tasks by up to 60%, and a recent CKGE framework (IncDE) failed to scale to our 5.67M-triple base task across five attempts up to 350GB RAM. Data, pipeline, baselines, and the stratified split are released openly. Dataset:huggingface.co/datasets/yradwan147/PrimeKGCL|Code:github.com/yradwan147/primekg-cl-neurips2026

cs.AI↗

arXiv2026

GAD in the Wild: Benchmarking Graph Anomaly Detection under Realistic Deployment Challenges

Graph Anomaly Detection (GAD) is a critical task in graph machine learning with vital applications in financial fraud detection and social platform governance. However, existing GAD benchmarks are often restricted to small-scale, curated graphs with relatively balanced anomaly ratios, leaving a substantial gap between academic evaluation and real-world deployment. To bridge this gap, we present a multi-dimensional benchmark that systematically evaluates GAD models under three deployment-relevant challenges: million-scale graphs, extreme anomaly scarcity, and missing node attributes. We derive a family of controlled benchmark variants from five diverse graphs, including two native industrial-scale datasets with over 3.7 million nodes. Our extensive evaluation of nine representative GAD models reveals three major limitations: (1) most GNN-based methods fail to scale to million-node graphs due to prohibitive memory requirements; (2) detection performance drops sharply under realistic anomaly ratios (e.g., 0.1\%), often resulting in zero recall; and (3) reconstruction-based models are highly sensitive to attribute imputation strategies. Our findings suggest that strong performance in laboratory settings does not guarantee robustness in production environments. We release this benchmark and empirical evaluation as a diagnostic testbed to promote the development of robust and scalable GAD systems for large-scale, imperfect graphs encountered in practice. Code is available at https://anonymous.4open.science/r/Benchmark_GAD-E7A3.

cs.LG↗

arXiv2026

Learning Multi-Relational Graph Representations for DNA Methylation-Based Biological Age Estimation

Aging clocks aim to estimate biological age, a measure of physiological state distinct from chronological age, from observable biomarkers, and are widely used for health assessment and disease analysis. DNA methylation is a particularly informative biomarker due to its stability and strong association with aging, and recent learning-based approaches have improved predictive performance. However, most existing methods treat CpG sites as independent features, overlooking the complex and heterogeneous biological relationships among them. We propose RelAge-GNN, a multi-relational graph neural network framework for DNA methylation-based age prediction. Our method constructs three complementary graphs capturing co-methylation patterns, genomic co-localization, and gene-level associations among CpG sites. Each graph is modeled by an independent GNN branch, and a learnable gating mechanism adaptively fuses the resulting representations. Experiments on large-scale datasets show that RelAge-GNN achieves competitive accuracy and stronger correlation with chronological age compared to state-of-the-art methods. Moreover, the model exhibits improved sensitivity in detecting age acceleration across diverse disease cohorts, highlighting its potential utility for disease characterization. Finally, through post hoc interpretability analyses, we quantify the contributions of different relational structures and CpG sites, providing biologically meaningful insights and suggesting potential directions for aging-related research. Our code is available at: https://anonymous.4open.science/r/RelAge-GNN-F1E3/.

cs.LG↗

arXiv2026

Benchmarking Fairness in Spiking Neural Networks: Data Bias, Spurious Features, and Hardware Effects

Evaluating fairness in Spiking Neural Networks (SNNs) demands rigorous benchmarks that reflect real-world complexities, yet existing assessments remain limited by superficial dataset diversity and idealized hardware assumptions. This work introduces the first systematic fairness benchmark for SNNs, addressing three critical dimensions of realism: (1) demographic coverage gaps in training data, (2) spurious feature leakage (e.g., skin tone as a proxy for class labels), and (3) deployment-environment mismatches (e.g., edge devices with constrained spike encoding). Our framework integrates four cross-demographic datasets with controlled bias injections and three neuromorphic hardware simulators (Loihi 2, SpiNNaker), enabling isolated analysis of fairness-performance trade-offs under resource constraints. Standardized evaluations of 12 state-of-the-art SNNs reveal stark disparities: models trained on biased data exhibit 23\% higher false positive rates for underrepresented groups, while hardware limitations (e.g., reduced spike precision) further amplify accuracy gaps by up to 41\% in edge deployments. Critically, bias mitigation strategies developed for cloud-based SNNs often degrade under resource constraints, highlighting the need for co-design principles that jointly optimize fairness and hardware efficiency. By bridging algorithmic fairness research with neuromorphic engineering, our benchmark provides a foundation for trustworthy SNNs in socially critical applications such as healthcare and autonomous systems. Our code is available at: https://anonymous.4open.science/r/SNN-Benchmarks-8017.

cs.NE↗

arXiv2026

Stable Multimodal Graph Unlearning via Feature-Dimension Aware Quantile Selection

Graph unlearning remains a critical technique for supporting privacy-preserving and sustainable multimodal graph learning. However, we observe that existing unlearning strategies tend to apply uniform parameter selection and editing across all graph neural network (GNN) layers, which is especially harmful for multimodal graphs where high-dimensional input projections encode dominant cross-modal knowledge. As a result, over-editing these sensitive layers often leads to catastrophic utility degradation after forgetting, undermining both stable learning and effective privacy protection. To address this gap, we propose FDQ, a Feature-Dimension Aware Quantile framework for multimodal graph unlearning. FDQ adaptively identifies high-dimensional input projection layers and applies more conservative, FDQ-guided quantile thresholds when constructing suppression sets, while keeping the underlying importance estimation mechanism unchanged. FDQ is seamlessly integrated with diagonal sensitivity-based parameter importance analysis to enable efficient node and edge unlearning under general forget requests. Through extensive experiments on Ele-Fashion and Goodreads-NC, we demonstrate that FDQ consistently achieves strong utility preservation while maintaining effective forgetting against membership inference attacks. Overall, FDQ offers a principled and robust solution for privacy-aware unlearning in high-dimensional multimodal graph systems.

cs.LG↗

arXiv2026

CURA: Clinical Uncertainty Risk Alignment for Language Model-Based Risk Prediction

Clinical language models (LMs) are increasingly applied to support clinical risk prediction from free-text notes, yet their uncertainty estimates often remain poorly calibrated and clinically unreliable. In this work, we propose Clinical Uncertainty Risk Alignment (CURA), a framework that aligns clinical LM-based risk estimates and uncertainty with both individual error likelihoods and cohort-level ambiguities. CURA first fine-tunes domain-specific clinical LMs to obtain task-adapted patient embeddings, and then performs uncertainty fine-tuning of a multi-head classifier using a bi-level uncertainty objective. Specifically, an individual-level calibration term aligns predictive uncertainty with each patient's likelihood of error, while a cohort-aware regularizer pulls risk estimates toward event rates in their local neighborhoods in the embedding space and places extra weight on ambiguous cohorts near the decision boundary. We further show that this cohort-aware term can be interpreted as a cross-entropy loss with neighborhood-informed soft labels, providing a label-smoothing view of our method. Extensive experiments on MIMIC-IV clinical risk prediction tasks across various clinical LMs show that CURA consistently improves calibration metrics without substantially compromising discrimination. Further analysis illustrates that CURA reduces overconfident false reassurance and yields more trustworthy uncertainty estimates for downstream clinical decision support.

cs.CL↗

arXiv2026

Prototype-Enhanced Multi-View Learning for Thyroid Nodule Ultrasound Classification

Thyroid nodule classification using ultrasound imaging is essential for early diagnosis and clinical decision-making; however, despite promising performance on in-distribution data, existing deep learning methods often exhibit limited robustness and generalisation when deployed across different ultrasound devices or clinical environments. This limitation is mainly attributed to the pronounced heterogeneity of thyroid ultrasound images, which can lead models to capture spurious correlations rather than reliable diagnostic cues. To address this challenge, we propose PEMV-thyroid, a Prototype-Enhanced Multi-View learning framework that accounts for data heterogeneity by learning complementary representations from multiple feature perspectives and refining decision boundaries through a prototype-based correction mechanism with mixed prototype information. By integrating multi-view representations with prototype-level guidance, the proposed approach enables more stable representation learning under heterogeneous imaging conditions. Extensive experiments on multiple thyroid ultrasound datasets demonstrate that PEMV-thyroid consistently outperforms state-of-the-art methods, particularly in cross-device and cross-domain evaluation scenarios, leading to improved diagnostic accuracy and generalisation performance in real-world clinical settings. The source code is available at https://github.com/chenyangmeii/Prototype-Enhanced-Multi-View-Learning.

cs.CV↗

arXiv2026

FairGC: Fairness-aware Graph Condensation

Graph condensation (GC) has become a vital strategy for scaling Graph Neural Networks by compressing massive datasets into small, synthetic node sets. While current GC methods effectively maintain predictive accuracy, they are primarily designed for utility and often ignore fairness constraints. Because these techniques are bias-blind, they frequently capture and even amplify demographic disparities found in the original data. This leads to synthetic proxies that are unsuitable for sensitive applications like credit scoring or social recommendations. To solve this problem, we introduce FairGC, a unified framework that embeds fairness directly into the graph distillation process. Our approach consists of three key components. First, a Distribution-Preserving Condensation module synchronizes the joint distributions of labels and sensitive attributes to stop bias from spreading. Second, a Spectral Encoding module uses Laplacian eigen-decomposition to preserve essential global structural patterns. Finally, a Fairness-Enhanced Neural Architecture employs multi-domain fusion and a label-smoothing curriculum to produce equitable predictions. Rigorous evaluations on four real-world datasets, show that FairGC provides a superior balance between accuracy and fairness. Our results confirm that FairGC significantly reduces disparity in Statistical Parity and Equal Opportunity compared to existing state-of-the-art condensation models. The codes are available at https://github.com/LuoRenqiang/FairGC.

cs.LG↗

arXiv2026

GoAgent: Group-of-Agents Communication Topology Generation for LLM-based Multi-Agent Systems

Large language model (LLM)-based multi-agent systems (MAS) have demonstrated exceptional capabilities in solving complex tasks, yet their effectiveness depends heavily on the underlying communication topology that coordinates agent interactions. Within these systems, successful problem-solving often necessitates task-specific group structures to divide and conquer subtasks. However, most existing approaches generate communication topologies in a node-centric manner, leaving group structures to emerge implicitly from local connectivity decisions rather than modeling them explicitly, often leading to suboptimal coordination and unnecessary communication overhead. To address this limitation, we propose GoAgent (Group-of-Agents), a communication topology generation method that explicitly treats collaborative groups as the atomic units of MAS construction. Specifically, GoAgent first enumerates task-relevant candidate groups through an LLM and then autoregressively selects and connects these groups as atomic units to construct the final communication graph, jointly capturing intra-group cohesion and inter-group coordination. To mitigate communication redundancy and noise propagation inherent in expanding topologies, we further introduce a conditional information bottleneck (CIB) objective that compresses inter-group communication, preserving task-relevant signals while filtering out redundant historical noise. Extensive experiments on six benchmarks demonstrate the state-of-the-art performance of GoAgent with 93.84% average accuracy while reducing token consumption by about 17%.

cs.LG↗

arXiv2026

Spiking Graph Predictive Coding for Reliable OOD Generalization

Graphs provide a powerful basis for modeling Web-based relational data, with expressive GNNs to support the effective learning in dynamic web environments. However, real-world deployment is hindered by pervasive out-of-distribution (OOD) shifts, where evolving user activity and changing content semantics alter feature distributions and labeling criteria. These shifts often lead to unstable or overconfident predictions, undermining the trustworthiness required for Web4Good applications. Achieving reliable OOD generalization demands principled and interpretable uncertainty estimation; however, existing methods are largely post-hoc, insensitive to distribution shifts, and unable to explain where uncertainty arises especially in high-stakes settings. To address these limitations, we introduce SpIking GrapH predicTive coding (SIGHT), an uncertainty-aware plug-in graph learning module for reliable OOD Generalization. SIGHT performs iterative, error-driven correction over spiking graph states, enabling models to expose internal mismatch signals that reveal where predictions become unreliable. Across multiple graph benchmarks and diverse OOD scenarios, SIGHT consistently enhances predictive accuracy, uncertainty estimation, and interpretability when integrated with GNNs.

cs.LG↗

arXiv2026

Predicting Graph Structure via Adapted Flux Balance Analysis

Many dynamic processes such as telecommunication and transport networks can be described through discrete time series of graphs. Modelling the dynamics of such time series enables prediction of graph structure at future time steps, which can be used in applications such as detection of anomalies. Existing approaches for graph prediction have limitations such as assuming that the vertices do not to change between consecutive graphs. To address this, we propose to exploit time series prediction methods in combination with an adapted form of flux balance analysis (FBA), a linear programming method originating from biochemistry. FBA is adapted to incorporate various constraints applicable to the scenario of growing graphs. Empirical evaluations on synthetic datasets (constructed via Preferential Attachment model) and real datasets (UCI Message, HePH, Facebook, Bitcoin) demonstrate the efficacy of the proposed approach.

cs.LG↗

arXiv2026

When to Trust: A Causality-Aware Calibration Framework for Accurate Knowledge Graph Retrieval-Augmented Generation

Knowledge Graph Retrieval-Augmented Generation (KG-RAG) extends the RAG paradigm by incorporating structured knowledge from knowledge graphs, enabling Large Language Models (LLMs) to perform more precise and explainable reasoning. While KG-RAG improves factual accuracy in complex tasks, existing KG-RAG models are often severely overconfident, producing high-confidence predictions even when retrieved sub-graphs are incomplete or unreliable, which raises concerns for deployment in high-stakes domains. To address this issue, we propose Ca2KG, a Causality-aware Calibration framework for KG-RAG. Ca2KG integrates counterfactual prompting, which exposes retrieval-dependent uncertainties in knowledge quality and reasoning reliability, with a panel-based re-scoring mechanism that stabilises predictions across interventions. Extensive experiments on two complex QA datasets demonstrate that Ca2KG consistently improves calibration while maintaining or even enhancing predictive accuracy.

cs.CL↗

arXiv2026

FedCARE: Federated Unlearning with Conflict-Aware Projection and Relearning-Resistant Recovery

Federated learning (FL) enables collaborative model training without centralizing raw data, but privacy regulations such as the right to be forgotten require FL systems to remove the influence of previously used training data upon request. Retraining a federated model from scratch is prohibitively expensive, motivating federated unlearning (FU). However, existing FU methods suffer from high unlearning overhead, utility degradation caused by entangled knowledge, and unintended relearning during post-unlearning recovery. In this paper, we propose FedCARE, a unified and low overhead FU framework that enables conflict-aware unlearning and relearning-resistant recovery. FedCARE leverages gradient ascent for efficient forgetting when target data are locally available and employs data free model inversion to construct class level proxies of shared knowledge. Based on these insights, FedCARE integrates a pseudo-sample generator, conflict-aware projected gradient ascent for utility preserving unlearning, and a recovery strategy that suppresses rollback toward the pre-unlearning model. FedCARE supports client, instance, and class level unlearning with modest overhead. Extensive experiments on multiple datasets and model architectures under both IID and non-IID settings show that FedCARE achieves effective forgetting, improved utility retention, and reduced relearning risk compared to state of the art FU baselines.

cs.LG↗

arXiv2026

Securing LLM-as-a-Service for Small Businesses: An Industry Case Study of a Distributed Chatbot Deployment Platform

Large Language Model (LLM)-based question-answering systems offer significant potential for automating customer support and internal knowledge access in small businesses, yet their practical deployment remains challenging due to infrastructure costs, engineering complexity, and security risks, particularly in retrieval-augmented generation (RAG)-based settings. This paper presents an industry case study of an open-source, multi-tenant platform that enables small businesses to deploy customised LLM-based support chatbots via a no-code workflow. The platform is built on distributed, lightweight k3s clusters spanning heterogeneous, low-cost machines and interconnected through an encrypted overlay network, enabling cost-efficient resource pooling while enforcing container-based isolation and per-tenant data access controls. In addition, the platform integrates practical, platform-level defences against prompt injection attacks in RAG-based chatbots, translating insights from recent prompt injection research into deployable security mechanisms without requiring model retraining or enterprise-scale infrastructure. We evaluate the proposed platform through a real-world e-commerce deployment, demonstrating that secure and efficient LLM-based chatbot services can be achieved under realistic cost, operational, and security constraints faced by small businesses.

cs.DC↗

arXiv2026

FairGE: Fairness-Aware Graph Encoding in Incomplete Social Networks

Graph Transformers (GTs) are increasingly applied to social network analysis, yet their deployment is often constrained by fairness concerns. This issue is particularly critical in incomplete social networks, where sensitive attributes are frequently missing due to privacy and ethical restrictions. Existing solutions commonly generate these incomplete attributes, which may introduce additional biases and further compromise user privacy. To address this challenge, FairGE (Fair Graph Encoding) is introduced as a fairness-aware framework for GTs in incomplete social networks. Instead of generating sensitive attributes, FairGE encodes fairness directly through spectral graph theory. By leveraging the principal eigenvector to represent structural information and padding incomplete sensitive attributes with zeros to maintain independence, FairGE ensures fairness without data reconstruction. Theoretical analysis demonstrates that the method suppresses the influence of non-principal spectral components, thereby enhancing fairness. Extensive experiments on seven real-world social network datasets confirm that FairGE achieves at least a 16% improvement in both statistical parity and equality of opportunity compared with state-of-the-art baselines. The source code is shown in https://github.com/LuoRenqiang/FairGE.

cs.SI↗

arXiv2026

FairGU: Fairness-aware Graph Unlearning in Social Networks

Graph unlearning has emerged as a critical mechanism for supporting sustainable and privacy-preserving social networks, enabling models to remove the influence of deleted nodes and thereby better safeguard user information. However, we observe that existing graph unlearning techniques insufficiently protect sensitive attributes, often leading to degraded algorithmic fairness compared with traditional graph learning methods. To address this gap, we introduce FairGU, a fairness-aware graph unlearning framework designed to preserve both utility and fairness during the unlearning process. FairGU integrates a dedicated fairness-aware module with effective data protection strategies, ensuring that sensitive attributes are neither inadvertently amplified nor structurally exposed when nodes are removed. Through extensive experiments on multiple real-world datasets, we demonstrate that FairGU consistently outperforms state-of-the-art graph unlearning methods and fairness-enhanced graph learning baselines in terms of both accuracy and fairness metrics. Our findings highlight a previously overlooked risk in current unlearning practices and establish FairGU as a robust and equitable solution for the next generation of socially sustainable networked systems. The codes are available at https://github.com/LuoRenqiang/FairGU.

cs.LG↗

arXiv2026

STEAMROLLER: A Multi-Agent System for Inclusive Automatic Speech Recognition for People who Stutter

People who stutter (PWS) face systemic exclusion in today's voice-driven society, where access to voice assistants, authentication systems, and remote work tools increasingly depends on fluent speech. Current automatic speech recognition (ASR) systems, trained predominantly on fluent speech, fail to serve millions of PWS worldwide. We present STEAMROLLER, a real time system that transforms stuttered speech into fluent output through a novel multi-stage, multi-agent AI pipeline. Our approach addresses three critical technical challenges: (1) the difficulty of direct speech to speech conversion for disfluent input, (2) semantic distortions introduced during ASR transcription of stuttered speech, and (3) latency constraints for real time communication. STEAMROLLER employs a three stage architecture comprising ASR transcription, multi-agent text repair, and speech synthesis, where our core innovation lies in a collaborative multi-agent framework that iteratively refines transcripts while preserving semantic intent. Experiments on the FluencyBank dataset and a user study demonstrates clear word error rate (WER) reduction and strong user satisfaction. Beyond immediate accessibility benefits, fine tuning ASR on STEAMROLLER repaired speech further yields additional WER improvements, creating a pathway toward inclusive AI ecosystems.

cs.CY↗

arXiv2026

When to Invoke: Refining LLM Fairness with Toxicity Assessment

Large Language Models (LLMs) are increasingly used for toxicity assessment in online moderation systems, where fairness across demographic groups is essential for equitable treatment. However, LLMs often produce inconsistent toxicity judgements for subtle expressions, particularly those involving implicit hate speech, revealing underlying biases that are difficult to correct through standard training. This raises a key question that existing approaches often overlook: when should corrective mechanisms be invoked to ensure fair and reliable assessments? To address this, we propose FairToT, an inference-time framework that enhances LLM fairness through prompt-guided toxicity assessment. FairToT identifies cases where demographic-related variation is likely to occur and determines when additional assessment should be applied. In addition, we introduce two interpretable fairness indicators that detect such cases and improve inference consistency without modifying model parameters. Experiments on benchmark datasets show that FairToT reduces group-level disparities while maintaining stable and reliable toxicity predictions, demonstrating that inference-time refinement offers an effective and practical approach for fairness improvement in LLM-based toxicity assessment systems. The source code can be found at https://aisuko.github.io/fair-tot/.

cs.CL↗