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142 records · Page 2Linked to original sources

Energy-Based Dynamical Models for Neurocomputation, Learning, and Optimization

Recent advances at the intersection of control theory, neuroscience, and machine learning have revealed novel mechanisms by which dynamical systems perform computation. These advances encompass a wide range of conceptual, mathematical, and computational ideas, with applications for model learning and training, memory retrieval, data-driven control, and optimization. This tutorial focuses on neuro-inspired approaches to computation that aim to improve scalability, robustness, and energy efficiency across such tasks, bridging the gap between artificial and biological systems. Particular emphasis is placed on energy-based dynamical models that encode information through gradient flows and energy landscapes. We begin by reviewing classical formulations, such as continuous-time Hopfield networks and Boltzmann machines, and then extend the framework to modern developments. These include dense associative memory models for high-capacity storage, oscillator-based networks for large-scale optimization, and proximal-descent dynamics for composite and constrained reconstruction. The tutorial demonstrates how control-theoretic principles can guide the design of next-generation neurocomputing systems, steering the discussion beyond conventional feedforward and backpropagation-based approaches to artificial intelligence.

cs.LG

Separating perception from reasoning in vision-language models: a model-free render ceiling for crystal structures

Multimodal evaluations cannot say whether a vision-language model misread an image or misreasoned about it, because every existing method for separating the two places a second model in the loop. We introduce the render ceiling, a model-free reference for benchmarks built by rendering known objects: inverting the frozen cameras and re-solving cross-view correspondence recovers exactly the answer the images support. We prove the ceiling fails only through an enumerable set of projection coincidences and certify that set empty on 2,160 rendered crystal structures, so every point of a model's deficit belongs to the model. Across fourteen vision-language models, supplying exact geometry as text lifts every model yet closes under half the gap for thirteen, while a supervised vision model with no language component reads the same images at 0.8952, above every vision-language model. The instrument exposes extraction-stage fabrication that downstream accuracy would misattribute to reasoning, yields camera-placement rules for benchmark builders, and transfers to any benchmark with an invertible forward rendering.

cs.CV

Criticality and universality in network dismantling

Identifying the smallest set of elements whose removal dismantle a complex network, known as the network dismantling problem, is a fundamental task with many practical applications. Whereas network dismantling has been extensively studied over the past decade, most work has focused on developing efficient algorithms for large but finite networks. By contrast, the physics of the network dismantling process, namely how the network structural connectivity is affected by the removal of nodes or edges, remains largely unexplored in the thermodynamic limit. Here, we shed light on this understudied aspect of network dismantling by introducing an adaptive biased percolation process able to optimally dismantle a network. Through a systematic analysis of synthetic network models, we find that the proposed percolation process displays a universal phase transition, characterized by the abrupt and simultaneous disappearance of both the giant connected component and the largest 2-core, across networks with markedly different degree distributions. Simulations on real networks further support this universality, indicating that the physics of network dismantling is insensitive to a broad range of topological properties. Together, these results suggest that a topology-agnostic theory could be developed to explain the critical behavior of network dismantling.

physics.soc-ph

Local minima in quantum systems

Finding ground states of quantum many-body systems is known to be hard for both classical and quantum computers. As a result, when Nature cools a quantum system in a low-temperature thermal bath, the ground state cannot always be found efficiently. Instead, Nature finds a local minimum of the energy. In this work, we study the problem of finding local minima in quantum systems under thermal perturbations. While local minima are much easier to find than ground states, we show that finding a local minimum is computationally hard for classical computers, even when the task is to output a single-qubit observable at any local minimum. In contrast, we prove that a quantum computer can always find a local minimum efficiently using a thermal gradient descent algorithm that mimics the cooling process in Nature. To establish the classical hardness of finding local minima, we consider a family of two-dimensional Hamiltonians such that any problem solvable by polynomial-time quantum algorithms can be reduced to finding ground states of these Hamiltonians. We prove that for such Hamiltonians, all local minima are global minima. Therefore, assuming quantum computation is more powerful than classical computation, finding local minima is classically hard and quantumly easy.

quant-ph

Physics-informed learning for the inverse problem in resonant ultrasound spectroscopy

Inferring elastic constants from resonant ultrasound spectra is a nonlinear and typically overdetermined inverse problem based on finite spectral data. We formulate the Rayleigh-Ritz inverse problem as a constrained inverse-isospectral problem on the set of physically admissible elasticity tensors. This induces effective low-dimensional variables for the inverse map on the admissible elasticity manifold: length and elastic scales, aspect-ratio coordinates, scale-free spectral features, and stability-respecting elastic ratios. We use these variables to construct a physics-informed learning pipeline in which a regression model acts only on reduced spectral and geometric features, while scale recovery and final elastic-constant reconstruction are imposed analytically. For the full cubic benchmark, the reconstructed constants have MAE values of $20.37(35.15)$, $24.30(41.33)$, and $2.13(3.66)~\mathrm{GPa}$ for $C_{11}$, $C_{12}$, and $C_{44}$. In the fixed-geometry benchmark, the corresponding cubic MAPE values are $4.14(3.87)\%$, $8.31(8.50)\%$, and $2.44(2.86)\%$, while the isotropic values are $4.0(3.6)\%$ and $0.4(0.3)\%$ for the bulk and shear moduli. The inverse problem then becomes a constrained regression problem in variables adapted to the geometry, scaling, crystal symmetry, and thermodynamic stability of Hookean elasticity.

cond-mat.mtrl-sci

Inverse design of bespoke interatomic potentials via active learning by information-matching

Interatomic potentials (IPs) enable large-scale atomistic simulations beyond the reach of first-principles methods, but their predictive reliability depends critically on the selection of training data, quantified uncertainty, and model expressiveness. Active learning (AL) provides a principled framework for constructing efficient and accurate IPs, yet most strategies reduce parameter uncertainty without explicitly accounting for the specific material properties being predicted. The information-matching (IM) approach addresses this limitation by requiring that the selected training data provide at least as much parameter space information as needed to achieve prescribed uncertainty targets for selected quantities of interest (QoIs). Here, we apply IM to develop bespoke IPs specifically tailored for predicting plastic strength in metals. Due to the high computational cost of simulating plastic strength, we employ an indirect IM strategy that targets inexpensive intermediate QoIs that correlate with strength. The IM method enables precise parameter constraints with minimal training data, yielding precise predictions for both the intermediate QoIs and plastic strength. Yet, model error remains a key limitation, and a post hoc uncertainty inflation correction provides a viable means to mitigate this limitation. These findings illustrate both the promise and limits of uncertainty-aware AL for predicting complex material properties.

cond-mat.mtrl-sci

Phase-field digital image correlation for integrated displacement and damage measurements

This work presents a novel digital image correlation (DIC) framework for full-field measurements of displacement, strain, and damage, based on a phase field (PF) approach. The idea is to take advantage of the ability of the PF method to track complex crack morphologies and to provide a natural way in DIC to perform damage and crack measurements from experimental speckle images, in addition to displacement and strain fields. Moreover, incorporating the damage variable into DIC can improve the displacement accuracy near the crack tip, and can avoid the need of user-defined masks when dealing with cracked samples, which is advantageous when cracks become complex and the manual application of masks becomes challenging. The theoretical formulation of the proposed framework, namely PF-DIC, was presented in detail in the paper, along with a finite element implementation. Numerical examples have demonstrated the capability of the proposed PF-DIC in terms of capturing different types of cracks while providing similar measurement accuracy to that of masked DIC. Additionally, it is shown that the PF-DIC can be easily adapted to selectively identify critical cracks under specific loading conditions or mechanisms for damage assessment and diagnostic purposes. The proposed DIC framework can be used to characterize material defects, support structural health monitoring, and enable a potential unification of PF simulations and experimental fracture measurements

math.NA

Polarizable atomic multipoles for learning long-range electrostatics

Long-range electrostatics and polarization remain central obstacles to extending machine learning interatomic potentials (MLIPs) to ionic, polar, and interfacial systems. Here we introduce a semi-local framework for learning electrostatics from energies and forces using polarizable atomic multipoles. Local equivariant descriptors predict environment-dependent latent monopoles, dipoles, and quadrupoles, while residual non-local charge transfer and polarization are captured by non-self-consistent linear response in induced charges and dipoles. Across four diverse benchmarks and four short-range MLIP architectures, the multipole hierarchy and response terms systematically improve potential energy surface accuracy, with the largest gains in systems where long-range effects are essential. More importantly, physically meaningful electrical responses emerge without direct supervision. The learned latent multipoles yield accurate Born effective charge tensors and infrared spectra in close agreement with experiments. The induced-dipole extension introduces new capabilities: it predicts polarizabilities and thereby enables semi-quantitative Raman spectra for bulk water and hybrid MAPbI$_3$ perovskite, as well as the essential features of the surface-specific vibrational sum-frequency generation spectrum at the water-air interface. In ferroelectric HfO$_2$, the predicted electrical response also captures LO-TO splitting and polarization switching. This systematically improvable, physically transparent framework enables MLIPs trained on standard energy and force labels to predict polarization-sensitive observables.

cond-mat.mtrl-sci

Memory as an Energy Landscape---Hopfield

This chapter reconstructs the Hopfield network as a physical theory of memory rather than merely an early neural-network algorithm. It begins with the problem as it stood before 1982-threshold logic, Hebbian association, correlation memories, and recurrent binary networks-and isolates what Hopfield's synthesis added: a dynamical definition of content-addressable memory, a symmetric recurrent architecture with a Lyapunov function, a Hebbian embedding of patterns in its couplings, and a physical account of basins, robustness, and graceful degradation. The binary and graded-response energy functions are derived in full, together with the signal-crosstalk decomposition governing pattern stability, the mean-field theory of retrieval at extensive load, and the zero-temperature retrieval spinodal at (alpha 0.138) established by Amit, Gutfreund, and Sompolinsky. The energy-based program is then followed through analog optimization networks, polynomial dense associative memories, exponential interactions, and modern continuous Hopfield updates, including the precise conditions under which the update becomes scaled dot-product attention. Throughout, capacity claims are tied to their disorder ensemble, scaling limit, and success criterion, showing why numerically different storage limits need not conflict. A closing assessment distinguishes established results from surviving principles, assumption-bound limitations, and open problems, treating the Hopfield network as an effective theory whose symmetry, locality, and point-neuron assumptions delimit its biological reach. Fixed-seed numerical experiments expose the mechanisms discussed but do not substitute for analytical results.

cs.NE

Bellman-sufficient Information Complexity

We introduce Bellman-sufficient information complexity for minimax analysis of sequential decision problems. A Bellman-sufficient state retains enough of the history to close the controlled recursion, while an index $Y=χ(Ω)$ specifies the decision-relevant information being charged. The upper bound is a log-penalized Bellman program; the lower bound is a Bellman--Fano comparison along an algorithm-dependent reference trajectory. If the two values match at a common localization scale and the stated admissibility, calibration, and growth conditions hold, they form an information-risk sandwich. UCB, E2D, and AMS/EBO control or relax the upper Bellman bracket in different ways. For the main application, we give a negative answer to a widely studied form of the GP--UCB minimax-optimality question. For every $0<α<1/4$, we construct one bounded continuous kernel whose minimax regret is $Θ(T^{1-α})$ along an infinite sequence of horizons, while two globally calibrated GP--UCB rules incur linear regret under one fixed truth. An epochwise finite-marginal action-index AIR Bellman policy, implemented through robust AIR/AMS/EBO control, attains the minimax order. The construction separates realized information from the cost of uniform optimism: many low-value directions inflate the exploration multiplier and change the trajectory. Through the canonical RKHS feature map, it also yields a finite-horizon polynomial minimax separation for the specified maximal-information-calibrated LinUCB rule. A reproducible experiment illustrates the mechanism.

cs.LG

Propensity Straight-Through Gradients for Discrete Stochastic Systems

Continuous-time Markov chains (CTMCs) provide the backbone for modeling discrete stochastic dynamics across applied, physical, and biological sciences. Their integration with modern gradient-based machine learning, however, is limited by the hard categorical event selection intrinsic to Gillespie-type simulation algorithms. We exploit the affine state update to obtain the exact one-step conditional-mean sensitivity by differentiating normalized reaction propensities. We pair this backward rule with exact forward trajectories to define the propensity straight-through (PST) estimator. At the trajectory level, we show that one-step sensitivities composed across events can depart from the exact multistep sensitivity. We derive the resulting per-step discrepancy in closed form and prove that it vanishes identically for affine downstream dependence. PST matches the accuracy of Gumbel-Softmax straight-through across all benchmarks: reversible dimerization (0.06% error), a genetic oscillator (1.7% error), a 50-task repressilator suite (0.17% median error), and patch-clamp ion-channel recordings ($R^2$ = 0.988). Under matched settings, PST converges 3.0-fold faster on the oscillator and 2.1-fold faster on the ion channel. At deep-learning scale, PST trains a 203,796-parameter stochastic reaction network with hard sampling, reaching 98.22% MNIST digit classification accuracy. By differentiating an exact conditional mean rather than a relaxed sample, PST offers a temperature- and Gumbel-free path to scalable gradient-based learning through exact stochastic trajectories.

q-bio.QM

Autonomous discovery of new structure-plausibility laws for explainable and rapid crystal diagnosis and screening

Crystal generators and tool-using agents propose structures faster than density functional theory (DFT) energy and phonon calculations or experiments can assess them. Deciding which candidates merit expensive assessment is therefore the bottleneck, yet most screens test little beyond atomic overlap and give no chemical reason for failure. Here, our agents generate, test and actively refute two million candidate laws, leaving eight Plausibility Rules for Inorganic Structures (PRIS). These laws encode five mechanisms: short-range repulsion, ionic contact and packing, electrostatic balance, bond-valence conservation and crystallographic site complexity. Experimental structures satisfy our law sets at 82--99%, but satisfy Pauling's rules 2--5 together at only 6.5%. The strictest set detects 87.9% of damaged crystal structures, whereas distance cutoffs detect only 1.6--3.2%. PRIS plausibility is linearly correlated with synthesizability, so the PRIS-derived synthesis score (PSS) explainably screens 83.7% of hard-to-synthesize structures while retaining 80.7% of experimental structures. In a property-conditioned inverse-design run, PRIS and PSS can reduce the DFT validation queue by up to 67.3% and keep 99.2% of the candidates whose DFT-validated bulk moduli reach the design target. Beyond screening, PRIS explains why GNoME remains enriched in rare low-symmetry structures and reveals how wrong-element assignments in falsified crystal reports hide behind plausible coordinates. PRIS moves screening from a pass-or-fail verdict to a chemical reason for failure, showing that autonomous agents can discover, by active refutation, physicochemical laws that guide calculations and experiments.

cond-mat.mtrl-sci

Learning and extrapolating scale-invariant processes

Machine Learning (ML) has deeply changed some fields recently, like Language and Vision and we may expect it to be relevant also to the analysis of of complex systems. Here we want to tackle the question of how and to which extent can one regress scale-free processes, i.e. processes displaying power law behavior, like earthquakes or avalanches? We are interested in predicting the large ones, i.e. rare events in the training set which therefore require extrapolation capabilities of the model. For this we consider two paradigmatic problems that are statistically self-similar. The first one is a 2-dimensional fractional Gaussian field obeying linear dynamics, self-similar by construction and amenable to exact analysis. The second one is the Abelian sandpile model, exhibiting self-organized criticality. The emerging paradigm of Geometric Deep Learning shows that including known symmetries into the model's architecture is key to success. Here one may hope to extrapolate only by leveraging scale invariance. This is however a peculiar symmetry, as it involves possibly non-trivial coarse-graining operations and anomalous scaling. We perform experiments on various existing architectures like U-net, Riesz network (scale invariant by construction), or our own proposals: a wavelet-decomposition based Graph Neural Network (with discrete scale symmetry), a Fourier embedding layer and a Fourier-Mellin Neural Operator. Based on these experiments and a complete characterization of the linear case, we identify the main issues relative to spectral biases and coarse-grained representations, and discuss how to alleviate them with the relevant inductive biases.

cond-mat.dis-nn

Scalable Bayesian Optimization of Composite Functions for Image-Based Inverse Problems in Materials Characterization

Estimating physical parameters from scientific images is a common inverse problem in materials characterization that often relies on expensive physics-based simulations. In electron microscopy, specimen thickness and crystal mistilt are critical parameters that govern how electrons scatter through the sample, and therefore the accuracy of any atomic-scale structure recovered from it. They are commonly inferred by matching experimental position-averaged convergent-beam electron diffraction (PACBED) patterns to simulated ones, but grid searches scale poorly and neural-network methods require extensive pretraining that may not transfer to new conditions. Here, we propose scalable Bayesian optimization of composite functions (SBOCF), a simulation-efficient method that exploits the known composite structure of the image-matching objective and the intermediate information contained in simulated images. By representing PACBED images with patch-level summaries and two correction terms, SBOCF preserves the original pixel-wise objective while reducing the number of modeled outputs from 24,649 to 11. Under a budget of 50 simulator evaluations, SBOCF outperformed standard Bayesian optimization with expected improvement on synthetic SrTiO3 benchmarks with thick and thin specimens, reducing the median final SSE by up to 290x in the thick-sample case. On experimental data, SBOCF produced parameter estimates consistent with previously reported values without task-specific pretraining. For a simulated mistilted specimen, using the SBOCF estimates in a downstream ptychographic reconstruction recovered sharp atoms that were otherwise blurred. These results establish SBOCF as a promising approach for inverse problems involving expensive simulators and high-dimensional structured outputs.

cs.LG

AutoREC: A reinforcement learning platform for equivalent circuit model generation

This paper introduces AutoREC, an open-source Python platform for developing, training, and evaluating reinforcement learning (RL) agents that automatically generate equivalent circuit models (ECMs) from electrochemical impedance spectroscopy (EIS) data. Although ECMs are widely used to interpret EIS measurements, their identification typically relies on manual trial-and-error, requiring domain expertise and limiting scalability, particularly in autonomous experimental pipelines such as self-driving laboratories. In AutoREC, ECM generation is formulated as a Markov decision process in which an RL agent sequentially modifies a circuit topology based on the current state, available actions, and feedback from the resulting model. The platform supports an end-to-end workflow encompassing EIS preprocessing with selectable impedance representations, agent setup and training, ECM generation for new measurements, and visualization-based evaluation and analysis of agent decision-making. AutoREC implements a configurable Double Deep Q-Network (DDQN) agent with prioritized experience replay and a dedicated dead-loop mitigation strategy for navigating the complex circuit-generation action space efficiently. To demonstrate the platform, we trained and evaluated a representative agent on synthetic EIS datasets and applied it to previously unseen experimental spectra from battery, corrosion, oxygen evolution reaction, and CO$_2$ reduction systems. These case studies illustrate the end-to-end capabilities of AutoREC while revealing challenges associated with experimental complexity and limited training-data coverage. The demonstrated agent serves as a reference implementation; AutoREC provides an extensible foundation through which users can develop and evaluate agents tailored to their specific electrochemical systems and research objectives.

cs.LG

Evaluating a 4B open-weights local LLM for agentic DFT workflows: a literature reproducibility audit

Agentic workflows in materials science relying on hosted commercial models face severe reproducibility, economic, and data-privacy constraints. To explore fully local agentic science, this work evaluates an open-weights Qwen3:4B model executing an autonomous scientific pipeline across varying hardware constraints. Applied to pentagonal two-dimensional materials, the system extracts parameters from unstructured text, translates them into density functional theory (DFT) inputs, and drives simulations to convergence under a strict neurosymbolic architecture where agents propose and deterministic code disposes. The workflow is guarded by verbatim text grounding and multi-pass inference unions to counteract hardware-induced structural collapse. Evaluated against 201 expert judgements, the extractor achieves 95.7% precision (95% CI 90.3-98.1%) and 67.3% recall (59.8-74.0%), ensuring extracted parameters are strictly factual. However, precision identifying absent parameters does not exceed 47.0%, establishing that the measured omission rate constitutes a loose upper bound on true literature incompleteness. Across three hardware configurations, complete GPU residency governs extraction quality more fundamentally than weight or cache precision, raising Matthews correlation from 0.414 to 0.530 at fixed quantisation and to 0.560 with an unquantised cache. A corpus-scale audit indicates only 19 (33.3%) of the 57 studies are reproducible in principle, reporting every method parameter needed to re-initialise the calculation. Driven to convergence, the workflow reproduces published lattice constants with a mean absolute relative error of 2.3% where the relaxed structure retains its prototype, establishing that lightweight open-weights models can reliably drive autonomous agentic workflows when bounded by deterministic code gates.

cond-mat.mtrl-sci

RAFT-DVC: Resolution-Aware Machine Learning-Based Digital Volume Correlation

Digital volume correlation (DVC) provides three-dimensional full-field displacement measurements from volumetric images, but how the internal resolution of a machine-learning-based DVC model affects accuracy and operating range remains poorly understood. Here, we present RAFT-DVC, a resolution-aware family of recurrent all-pairs field transforms (RAFT)-based DVC solvers with encoder downsampling factors s = 2, 4, and 8. Using a matched design, we find that the three solvers localize displacement to approximately 0.017 feature-grid voxel, giving an empirical raw-volume error scaling of approximately 0.017s voxel. The solvers exhibit complementary operating regimes governed jointly by displacement reach and volumetric-texture compatibility. Synthetic benchmarks show that RAFT-DVC achieves errors of the same order as tuned classical DVC under fine-texture, small-to-moderate-displacement conditions and becomes competitive or advantageous under coarse-texture, large-displacement conditions. Frequency-swept tests quantify deformation spatial resolution, while tiled inference enables dense estimation on large volumes. Evaluation on confocal volumetric images acquired during indentation illustrates the importance of matching solver operating regime to deformation magnitude and image texture. Tests on micro-CT images of elastomeric foam, despite training only on particle-labeled synthetic data, provide evidence of cross-texture transfer. We also identify coordinate-order inconsistencies in three-dimensional RAFT correlation sampling and introduce a non-cubic impulse test to verify sampler geometry independently of network training. Correcting the sampler improves native-input accuracy and generalization to unseen volume dimensions. Together, these results establish RAFT-DVC as a fast, resolution-aware framework for dense DVC with characterized accuracy and operating regimes.

cs.CV

AutoXRD: Autonomous LLM Agents and Comprehensive Evaluation for Powder Diffraction Analysis

Powder X-ray diffraction (XRD) is central to materials characterization, yet reliable end-to-end automation remains challenging. An XRD agent must interpret diffraction evidence, operate refinement software, manage coupled parameters in a defensible order, and distinguish numerical improvement from physical validity. In this paper, we propose AutoXRD, an autonomous large language model (LLM) agent framework that organizes powder-XRD analysis as stepwise refinement, grounds actions in observed evidence, and applies deterministic crystallographic and physical checks before accepting results. We further introduce XRDBench with two complementary tracks. XRDBench-QA contains 100 bounded diagnostic tasks that isolate scientific reasoning and decision-making, whereas XRDBench-E2E contains 34 executable workflows that test whether agents can compose these capabilities into complete analyses requiring file inspection, crystallographic-software execution, iterative refinement, evidence preservation, and reporting. We evaluate ten recent LLMs across 1,340 model--task runs. Models average only 57.8 out of 100, falling from 61.9 on XRDBench-QA to 53.7 on XRDBench-E2E. They perform best on refinement-history assessment and result acceptance, but remain substantially weaker on refinement-action selection, phase quantification, indexing, and Rietveld refinement. GPT-5.6 Sol achieves the highest overall score of 81.1, GPT-5.6 Terra the highest XRDBench-E2E point estimate of 81.0, and GPT-5.6 Luna the best score--cost trade-off. Ablations show that all six AutoXRD components consistently improve performance, supporting the framework design. Finally, execution-trace analysis reveals recurring failures in coupled-parameter control, quantitative reasoning, evidence preservation, and workflow termination, motivating stronger scientific constraints, uncertainty-aware decisions, and more efficient planning.

cond-mat.mtrl-sci