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Test of partial effects for Frechet regression on Bures-Wasserstein manifolds

We propose a novel test for assessing partial effects in Fréchet regression with responses lying on the Bures-Wasserstein manifold. Under the null hypothesis, we show that the statistic admits a degenerate V-statistic approximation whose limiting distribution is a weighted mixture of chi-squared random variables, with weights determined by the eigenvalues of an integral operator associated with a reproducing kernel Hilbert space (RKHS) kernel. We establish the asymptotic validity and consistency of the proposed test. Its finite-sample performance is examined through simulation studies. We apply the proposed test to study the effect of age, while controlling for other covariates, on gene co-expression structure in single-cell data.

stat.ML

Graph Machine: Towards Better Pretraining via Edges

We introduce the Graph Machine (GM), an architecture that maintains an $O(n)$-sized state and accesses it through sparse, dynamic routing. Unlike methods with fixed-size states or sparse but static routing, GM preserves $O(n)$ complexity in its sparse layers without restricting the potentially accessible state size to $O(1)$. Instead, GM uses edges - pointer-like objects updated differentiably by a referral mechanism resembling pointer chasing. We replace 75% of the dense Transformer layers in Qwen3-0.6B with GM sparse layers and pretrain from scratch on 15.7B tokens. With only 2 of 4,096 tokens retrieved per KV head in each sparse layer, loss degrades only slightly; with 4, the best model marginally improves loss.

cs.LG

Robust Filter Attention: Self-Attention as Precision-Weighted State Estimation

We introduce Robust Filter Attention (RFA), a formulation of self-attention as a robust state estimator. Each token is treated as a noisy observation of a latent trajectory governed by a linear stochastic differential equation (SDE), and attention weights are determined by consistency under this model rather than static feature similarity. Under isotropic noise and decay assumptions, RFA matches the computational complexity of standard attention. On language modeling benchmarks, RFA achieves lower perplexity than RoPE within the training window while remaining stable under zero-shot extrapolation to longer contexts. The framework also provides a dynamical interpretation of standard positional mechanisms, connecting rotational embeddings and recency biases to transport and uncertainty propagation induced by stochastic dynamics.

cs.LG

Diagonal Multi-omics Integration of Heterogeneous Datasets

In this paper, we consider methods for the diagonal multi-omics integration of heterogeneous datasets. Several approaches to the nature of biological heterogeneity are analyzed and developed to comprehend more clearly the generated differences. Specifically, the extremal trace problems for the coupled Laplacian on sets homeomorphic to the Stiefel manifold embedded in the complex Euclidean space are investigated. The gradient ascent method for the maximization problem is elaborated in the classical terms of functional analysis, which is of significant interest in itself. On this basis, we introduce a novel characteristic of dataset heterogeneity by employing the norm of the difference between the maximum and minimum points.

stat.ML

Towards Large-Scale Heterogeneous Data Organization for Scientific Foundation Models: A Nuclear Fusion Case Study

Training effective foundation models requires massive and organized datasets, yet scientific domains such as nuclear fusion present unique challenges due to largely heterogeneous and sparse data. Here we characterize the data used in developing such a model: with over 20 sensor types spanning 5 orders of magnitude in sampling rate, mixed tensor structures (point measurements, spectrograms, images), and nonstationary physics. We analyze our input complexity and discuss trade-offs between temporal context and frequency resolution. Our analysis provides a template for representing multi-modal fluctuation data at scale, with implications for both multi-modal control systems and nuclear fusion.

physics.plasm-ph

Percolation Dynamics in Optimization : Variance Cascades and Discrete Scale Invariance

We study the dynamics of Stochastic Gradient Descent (SGD), which is known to steer deep neural networks toward invariant sets that correspond to simpler subnetworks. How this steering unfolds over time remains poorly understood. We answer this by modeling the stochastic gradient flow (SGF) as a percolation process, in which architectural symmetries force subnetworks to merge in discrete simultaneous blocks rather than one at a time. These structural transitions register as variance spikes in a macroscopic order parameter, echoing physical phase transitions. We further show this trapping mechanism and its associated scaling cascade extend to Adam and AdamW under an explicit heavy-tailed noise model.

cs.LG

Fast Gauss Sums via Flash Attention

Gaussian kernel sums are the computational core of maximum mean discrepancies (MMDs), kernel gradient flows, Stein variational gradient descent (SVGD), and many other kernel methods. At the same time, softmax attention has received an extraordinary amount of hardware-aware code engineering, culminating in flash attention. We show that Gauss kernel sums with arbitrary, signed weights can be evaluated via flash attention: two small input augmentations turn the normalized softmax reduction into the unnormalized Gauss sum, without writing a single line of custom GPU code. For feature dimension D>8 in fp16, this approach beats compiled PyTorch code as well as PyKeOps kernels (often significantly) in speed, memory-overhead and accuracy. Indeed, its memory scaling remains linear.

cs.LG

Online Convex Optimization with Dueling Feedback

We study online convex optimization with dueling (pairwise comparison) feedback, where the learner observes only a binary preference between two queried points. While dueling feedback is well understood in discrete or stochastic settings, the adversarial convex setting has remained unexplored. We propose a simple reduction that converts dueling feedback into approximate gradients, enabling the use of standard first-order methods. We show that regret guarantees transfer under this reduction, yielding the first results for this setting, including $\mathcal{O}(T^{3/4})$ static, adaptive, and dynamic regret. Under additional structure, we obtain improved rates of $\mathcal{O}(T^{2/3})$ for smooth objectives and $\mathcal{O}(\sqrt{T \log T})$ for strongly convex functions.

cs.LG

KARMA: Knowledge graph-based Automated Reasoning Materialization and Alignment

Template-based contrastive synthesis is scalable, but its candidates often differ only in a few entity-slots while sequence-level optimization spreads supervision over mostly shared templates. We formalize this as the Resolution Mismatch Problem and propose KARMA, which enumerates schema-constrained paths over domain knowledge graphs and verbalizes them into slot-aligned contrastive candidates. Slot-Parallel Alignment (SPA) then applies a decoupled slot-level objective to route preference supervision to discriminative entity-slots, with slot-aware masked attention serving as an optional packed-evaluation implementation. Across biomedical, computer-science, and chemistry benchmarks, KARMA outperforms base LLM and same-data SFT baselines, and compares favorably with sequence- and token-level preference methods.

cs.CL

FluxDisco: Symbolic Regression for Stoichiometric Dynamical Systems via Monte Carlo Graph Search

Dynamical symbolic regression methods identify governing differential equations from noisy data, balancing interpretability and predictive accuracy. However, standard methods often produce expressions that violate known physical laws. To address this, we propose FluxDisco, a physics-informed framework tailored for flux-based, stoichiometric ODE systems. By leveraging a known stoichiometry, we reduce the expression search space and ensure physical adherence. Our framework adapts the Monte Carlo Graph Search algorithm for the unique challenges associated with joint flux discovery of stoichiometric systems. We evaluate our method across a range of physical and biological systems, demonstrating its ability to accurately recover governing dynamics through interpretable equations.

stat.ML

CheXtriev: Anatomy-Centered Representation for Case-Based Retrieval of Chest Radiographs

We present CheXtriev, a graph-based, anatomy-aware framework for chest radiograph retrieval. Unlike prior methods focussed on global features, our method leverages graph transformers to extract informative features from specific anatomical regions. Furthermore, it captures spatial context and the interplay between anatomical location and findings. This contextualization, grounded in evidence-based anatomy, results in a richer anatomy-aware representation and leads to more accurate, effective and efficient retrieval, particularly for less prevalent findings. CheXtriv outperforms state-of-the-art global and local approaches by 18% to 26% in retrieval accuracy and 11% to 23% in ranking quality. The code is available at https://github.com/cvit-mip/chextriev.

eess.IV

Machine Learning Classification and Portfolio Construction: Does the Loss Function Matter?

Classification outperforms regression across matched machine learning models in portfolio construction. A stacking ensemble of gradient boosted tree, random forest, and neural network yields a value-weighted annualized Sharpe ratio of 2.08 for classification and 1.39 for regression. This outperformance strengthens with class granularity and persists across subsamples and after transaction costs. Spanning tests show that classification retains economically large alphas after we control for regression, whereas regression alphas shrink substantially once we control for classification. These results indicate that classification extracts more return information than matched regression. Our diagnostics trace classification's advantage to more precise separation of return deciles.

q-fin.GN

Subspace Levenberg Marquardt Algorithms in Training Neural Networks

The Levenberg-Marquardt (LM) algorithm is a well-known second-order method for rapid convergence and strong robustness when training small- to medium-sized neural networks (NNs). However, its computational and memory costs increase significantly as the number of parameters in an NN grows. To address this limitation, subspace methods have been proposed, such as the Krylov subspace LM (KSLM) and the hybrid subspace LM (HSLM), making second-order algorithms more efficient. In this work, we evaluate the subspace Levenberg-Marquardt algorithms for regression and classification tasks in neural networks. We compare the performance of subspace LM variants with the classical LM method, as well as other popular first-order algorithms, such as stochastic gradient descent (SGD) and Adam.

cs.LG

Hardware-Aware FP4 FlashAttention-4

Blackwell's 4-bit floating-point (FP4) tensor cores do not automatically make attention faster because softmax conversion and on-chip dependencies dominate once its matrix products shrink. We address this with \emph{Direct-P} for noncausal inference and a causal path that passes the forward quantization directly into backward. Direct-P maps scores directly to FP4 probabilities and reaches up to 2.13$\times$ the bfloat16 (BF16) forward throughput on an NVIDIA GB200. The causal path reconstructs probabilities from saved quantized queries and keys and uses 8-bit floating-point (FP8) gradient operands, accelerating a complete single-GPU 8-billion-parameter update by up to 1.14$\times$. Matched distributed training retains FP8 probabilities and values; every tested MXFP4 probability/value training trajectory diverges.

cs.LG

Bayesian Sparse Low-Rank Adaptation for Large Language Model Uncertainty Estimation

Large language models (LLMs) exhibit remarkable reasoning capabilities, but their task-specific fine-tuning is notoriously plagued by overconfidence, severely hindering trustworthy deployment. We propose Data-Adaptive Lower-Rank Adaptation (DALorRA), a simple and effective variational Bayesian sparse framework that shifts the paradigm of uncertainty quantification from the dense parameter space to the lightweight rank level of low-rank adaptation (LoRA). With the insight that LoRA essentially aggregates multiple rank-one components that may provide superfluous model capacity, DALorRA imposes stochastic masking on rank dimensions, enabling Bayesian regularization of model capacity during training and ensemble-like calibration during inference. Extensive experiments demonstrate DALorRA's excellent calibration of LLMs without compromising reasoning accuracy.

cs.LG

Expected flow networks in stochastic environments and two-player zero-sum games

Generative flow networks (GFlowNets) are sequential sampling models trained to match a given distribution. GFlowNets have been successfully applied to various structured object generation tasks, sampling a diverse set of high-reward objects quickly. We propose expected flow networks (EFlowNets), which extend GFlowNets to stochastic environments. We show that EFlowNets outperform other GFlowNet formulations in stochastic tasks such as protein design. We then extend the concept of EFlowNets to adversarial environments, proposing adversarial flow networks (AFlowNets) for two-player zero-sum games. We show that AFlowNets learn to find above 80% of optimal moves in Connect-4 via self-play and outperform AlphaZero in tournaments.

cs.LG

Approximation of solutions of parameter-dependent problems by residual neural networks

We develop a convergent scheme to train neural networks involving analytic activation functions based on gradient flows. Convergence properties are guaranteed by Lojasiewicz theory. The main advantage of this approach is its simplicity of implementation. The coefficients of the network are approximated by solving a system of ordinary differential equations. We test the method by constructing residual neural network approximations of solutions of parametric problems. The dependence of the solutions of simple ordinary differential equations on a few parameters is correctly reproduced. The solutions of inverse problems involving wave constraints which depend on a few parameters can be reasonably approximated, even in regions in which the problem is severely ill posed.

math.NA

SHAKE-GNN: Scalable Hierarchical Kirchhoff-Forest Graph Neural Network

Graph Neural Networks (GNNs) have achieved remarkable success across a range of learning tasks. However, scaling GNNs to large graphs remains a significant challenge, especially for graph-level tasks. In this work, we introduce SHAKE-GNN, a novel scalable graph-level GNN framework based on a hierarchy of Kirchhoff Forests, a class of random spanning forests used to construct stochastic multi-resolution decompositions of graphs. SHAKE-GNN produces multi-scale representations, enabling flexible trade-offs between efficiency and performance. We introduce an improved, data-driven strategy for selecting the trade-off parameter and analyse the time-complexity of SHAKE-GNN. Experimental results on multiple large-scale graph classification benchmarks demonstrate that SHAKE-GNN achieves competitive performance while offering improved scalability.

cs.LG