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arXiv2023

Advances in Medical Image Analysis with Vision Transformers: A Comprehensive Review

The remarkable performance of the Transformer architecture in natural language processing has recently also triggered broad interest in Computer Vision. Among other merits, Transformers are witnessed as capable of learning long-range dependencies and spatial correlations, which is a clear advantage over convolutional neural networks (CNNs), which have been the de facto standard in Computer Vision problems so far. Thus, Transformers have become an integral part of modern medical image analysis. In this review, we provide an encyclopedic review of the applications of Transformers in medical imaging. Specifically, we present a systematic and thorough review of relevant recent Transformer literature for different medical image analysis tasks, including classification, segmentation, detection, registration, synthesis, and clinical report generation. For each of these applications, we investigate the novelty, strengths and weaknesses of the different proposed strategies and develop taxonomies highlighting key properties and contributions. Further, if applicable, we outline current benchmarks on different datasets. Finally, we summarize key challenges and discuss different future research directions. In addition, we have provided cited papers with their corresponding implementations in https://github.com/mindflow-institue/Awesome-Transformer.

cs.CV↗

arXiv2023

Unsupervised Mandarin-Cantonese Machine Translation

Advancements in unsupervised machine translation have enabled the development of machine translation systems that can translate between languages for which there is not an abundance of parallel data available. We explored unsupervised machine translation between Mandarin Chinese and Cantonese. Despite the vast number of native speakers of Cantonese, there is still no large-scale corpus for the language, due to the fact that Cantonese is primarily used for oral communication. The key contributions of our project include: 1. The creation of a new corpus containing approximately 1 million Cantonese sentences, and 2. A large-scale comparison across different model architectures, tokenization schemes, and embedding structures. Our best model trained with character-based tokenization and a Transformer architecture achieved a character-level BLEU of 25.1 when translating from Mandarin to Cantonese and of 24.4 when translating from Cantonese to Mandarin. In this paper we discuss our research process, experiments, and results.

cs.CL↗

arXiv2023

Augmented Transformers with Adaptive n-grams Embedding for Multilingual Scene Text Recognition

While vision transformers have been highly successful in improving the performance in image-based tasks, not much work has been reported on applying transformers to multilingual scene text recognition due to the complexities in the visual appearance of multilingual texts. To fill the gap, this paper proposes an augmented transformer architecture with n-grams embedding and cross-language rectification (TANGER). TANGER consists of a primary transformer with single patch embeddings of visual images, and a supplementary transformer with adaptive n-grams embeddings that aims to flexibly explore the potential correlations between neighbouring visual patches, which is essential for feature extraction from multilingual scene texts. Cross-language rectification is achieved with a loss function that takes into account both language identification and contextual coherence scoring. Extensive comparative studies are conducted on four widely used benchmark datasets as well as a new multilingual scene text dataset containing Indonesian, English, and Chinese collected from tourism scenes in Indonesia. Our experimental results demonstrate that TANGER is considerably better compared to the state-of-the-art, especially in handling complex multilingual scene texts.

cs.CL↗

arXiv2023

TrTr: A Versatile Pre-Trained Large Traffic Model based on Transformer for Capturing Trajectory Diversity in Vehicle Population

Understanding trajectory diversity is a fundamental aspect of addressing practical traffic tasks. However, capturing the diversity of trajectories presents challenges, particularly with traditional machine learning and recurrent neural networks due to the requirement of large-scale parameters. The emerging Transformer technology, renowned for its parallel computation capabilities enabling the utilization of models with hundreds of millions of parameters, offers a promising solution. In this study, we apply the Transformer architecture to traffic tasks, aiming to learn the diversity of trajectories within vehicle populations. We analyze the Transformer's attention mechanism and its adaptability to the goals of traffic tasks, and subsequently, design specific pre-training tasks. To achieve this, we create a data structure tailored to the attention mechanism and introduce a set of noises that correspond to spatio-temporal demands, which are incorporated into the structured data during the pre-training process. The designed pre-training model demonstrates excellent performance in capturing the spatial distribution of the vehicle population, with no instances of vehicle overlap and an RMSE of 0.6059 when compared to the ground truth values. In the context of time series prediction, approximately 95% of the predicted trajectories' speeds closely align with the true speeds, within a deviation of 7.5144m/s. Furthermore, in the stability test, the model exhibits robustness by continuously predicting a time series ten times longer than the input sequence, delivering smooth trajectories and showcasing diverse driving behaviors. The pre-trained model also provides a good basis for downstream fine-tuning tasks. The number of parameters of our model is over 50 million.

cs.AI↗

arXiv2024

The Shape of Learning: Anisotropy and Intrinsic Dimensions in Transformer-Based Models

In this study, we present an investigation into the anisotropy dynamics and intrinsic dimension of embeddings in transformer architectures, focusing on the dichotomy between encoders and decoders. Our findings reveal that the anisotropy profile in transformer decoders exhibits a distinct bell-shaped curve, with the highest anisotropy concentrations in the middle layers. This pattern diverges from the more uniformly distributed anisotropy observed in encoders. In addition, we found that the intrinsic dimension of embeddings increases in the initial phases of training, indicating an expansion into higher-dimensional space. Which is then followed by a compression phase towards the end of training with dimensionality decrease, suggesting a refinement into more compact representations. Our results provide fresh insights to the understanding of encoders and decoders embedding properties.

cs.CL↗

arXiv2024

GenTron: Diffusion Transformers for Image and Video Generation

In this study, we explore Transformer-based diffusion models for image and video generation. Despite the dominance of Transformer architectures in various fields due to their flexibility and scalability, the visual generative domain primarily utilizes CNN-based U-Net architectures, particularly in diffusion-based models. We introduce GenTron, a family of Generative models employing Transformer-based diffusion, to address this gap. Our initial step was to adapt Diffusion Transformers (DiTs) from class to text conditioning, a process involving thorough empirical exploration of the conditioning mechanism. We then scale GenTron from approximately 900M to over 3B parameters, observing significant improvements in visual quality. Furthermore, we extend GenTron to text-to-video generation, incorporating novel motion-free guidance to enhance video quality. In human evaluations against SDXL, GenTron achieves a 51.1% win rate in visual quality (with a 19.8% draw rate), and a 42.3% win rate in text alignment (with a 42.9% draw rate). GenTron also excels in the T2I-CompBench, underscoring its strengths in compositional generation. We believe this work will provide meaningful insights and serve as a valuable reference for future research.

cs.CV↗

arXiv2024

Transformers are Expressive, But Are They Expressive Enough for Regression?

Transformers have become pivotal in Natural Language Processing, demonstrating remarkable success in applications like Machine Translation and Summarization. Given their widespread adoption, several works have attempted to analyze the expressivity of Transformers. Expressivity of a neural network is the class of functions it can approximate. A neural network is fully expressive if it can act as a universal function approximator. We attempt to analyze the same for Transformers. Contrary to existing claims, our findings reveal that Transformers struggle to reliably approximate smooth functions, relying on piecewise constant approximations with sizable intervals. The central question emerges as: ''Are Transformers truly Universal Function Approximators?'' To address this, we conduct a thorough investigation, providing theoretical insights and supporting evidence through experiments. Theoretically, we prove that Transformer Encoders cannot approximate smooth functions. Experimentally, we complement our theory and show that the full Transformer architecture cannot approximate smooth functions. By shedding light on these challenges, we advocate a refined understanding of Transformers' capabilities. Code Link: https://github.com/swaroop-nath/transformer-expressivity.

cs.LG↗

arXiv2025

LHU-Net: a Lean Hybrid U-Net for Cost-efficient, High-performance Volumetric Segmentation

The rise of Transformer architectures has advanced medical image segmentation, leading to hybrid models that combine Convolutional Neural Networks (CNNs) and Transformers. However, these models often suffer from excessive complexity and fail to effectively integrate spatial and channel features, crucial for precise segmentation. To address this, we propose LHU-Net, a Lean Hybrid U-Net for volumetric medical image segmentation. LHU-Net prioritizes spatial feature extraction before refining channel features, optimizing both efficiency and accuracy. Evaluated on four benchmark datasets (Synapse, Left Atrial, BraTS-Decathlon, and Lung-Decathlon), LHU-Net consistently outperforms existing models across diverse modalities (CT/MRI) and output configurations. It achieves state-of-the-art Dice scores while using four times fewer parameters and 20% fewer FLOPs than competing models, without the need for pre-training, additional data, or model ensembles. With an average of 11 million parameters, LHU-Net sets a new benchmark for computational efficiency and segmentation accuracy. Our implementation is available on GitHub: https://github.com/xmindflow/LHUNet

eess.IV↗

arXiv2024

AFFSegNet: Adaptive Feature Fusion Segmentation Network for Microtumors and Multi-Organ Segmentation

Medical image segmentation, a crucial task in computer vision, facilitates the automated delineation of anatomical structures and pathologies, supporting clinicians in diagnosis, treatment planning, and disease monitoring. Notably, transformers employing shifted window-based self-attention have demonstrated exceptional performance. However, their reliance on local window attention limits the fusion of local and global contextual information, crucial for segmenting microtumors and miniature organs. To address this limitation, we propose the Adaptive Semantic Segmentation Network (ASSNet), a transformer architecture that effectively integrates local and global features for precise medical image segmentation. ASSNet comprises a transformer-based U-shaped encoder-decoder network. The encoder utilizes shifted window self-attention across five resolutions to extract multi-scale features, which are then propagated to the decoder through skip connections. We introduce an augmented multi-layer perceptron within the encoder to explicitly model long-range dependencies during feature extraction. Recognizing the constraints of conventional symmetrical encoder-decoder designs, we propose an Adaptive Feature Fusion (AFF) decoder to complement our encoder. This decoder incorporates three key components: the Long Range Dependencies (LRD) block, the Multi-Scale Feature Fusion (MFF) block, and the Adaptive Semantic Center (ASC) block. These components synergistically facilitate the effective fusion of multi-scale features extracted by the decoder while capturing long-range dependencies and refining object boundaries. Comprehensive experiments on diverse medical image segmentation tasks, including multi-organ, liver tumor, and bladder tumor segmentation, demonstrate that ASSNet achieves state-of-the-art results. Code and models are available at: \url{https://github.com/lzeeorno/ASSNet}.

cs.CV↗

arXiv2025

NeuroAMP: A Novel End-to-end General Purpose Deep Neural Amplifier for Personalized Hearing Aids

The prevalence of hearing aids is increasing. However, optimizing the amplification processes of hearing aids remains challenging due to the complexity of integrating multiple modular components in traditional methods. To address this challenge, we present NeuroAMP, a novel deep neural network designed for end-to-end, personalized amplification in hearing aids. NeuroAMP leverages both spectral features and the listener's audiogram as inputs, and we investigate four architectures: Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), Convolutional Recurrent Neural Network (CRNN), and Transformer. We also introduce Denoising NeuroAMP, an extension that integrates noise reduction along with amplification capabilities for improved performance in real-world scenarios. To enhance generalization, a comprehensive data augmentation strategy was employed during training on diverse speech (TIMIT and TMHINT) and music (Cadenza Challenge MUSIC) datasets. Evaluation using the Hearing Aid Speech Perception Index (HASPI), Hearing Aid Speech Quality Index (HASQI), and Hearing Aid Audio Quality Index (HAAQI) demonstrates that the Transformer architecture within NeuroAMP achieves the best performance, with SRCC scores of 0.9927 (HASQI) and 0.9905 (HASPI) on TIMIT, and 0.9738 (HAAQI) on the Cadenza Challenge MUSIC dataset. Notably, our data augmentation strategy maintains high performance on unseen datasets (e.g., VCTK, MUSDB18-HQ). Furthermore, Denoising NeuroAMP outperforms both the conventional NAL-R+WDRC approach and a two-stage baseline on the VoiceBank+DEMAND dataset, achieving a 10% improvement in both HASPI (0.90) and HASQI (0.59) scores. These results highlight the potential of NeuroAMP and Denoising NeuroAMP to deliver notable improvements in personalized hearing aid amplification.

eess.AS↗

arXiv2025

BRepFormer: Transformer-Based B-rep Geometric Feature Recognition

Recognizing geometric features on B-rep models is a cornerstone technique for multimedia content-based retrieval and has been widely applied in intelligent manufacturing. However, previous research often merely focused on Machining Feature Recognition (MFR), falling short in effectively capturing the intricate topological and geometric characteristics of complex geometry features. In this paper, we propose BRepFormer, a novel transformer-based model to recognize both machining feature and complex CAD models' features. BRepFormer encodes and fuses the geometric and topological features of the models. Afterwards, BRepFormer utilizes a transformer architecture for feature propagation and a recognition head to identify geometry features. During each iteration of the transformer, we incorporate a bias that combines edge features and topology features to reinforce geometric constraints on each face. In addition, we also proposed a dataset named Complex B-rep Feature Dataset (CBF), comprising 20,000 B-rep models. By covering more complex B-rep models, it is better aligned with industrial applications. The experimental results demonstrate that BRepFormer achieves state-of-the-art accuracy on the MFInstSeg, MFTRCAD, and our CBF datasets.

cs.CV↗

arXiv2025

Continuum Transformers Perform In-Context Learning by Operator Gradient Descent

Transformers robustly exhibit the ability to perform in-context learning, whereby their predictive accuracy on a task can increase not by parameter updates but merely with the placement of training samples in their context windows. Recent works have shown that transformers achieve this by implementing gradient descent in their forward passes. Such results, however, are restricted to standard transformer architectures, which handle finite-dimensional inputs. In the space of PDE surrogate modeling, a generalization of transformers to handle infinite-dimensional function inputs, known as "continuum transformers," has been proposed and similarly observed to exhibit in-context learning. Despite impressive empirical performance, such in-context learning has yet to be theoretically characterized. We herein demonstrate that continuum transformers perform in-context operator learning by performing gradient descent in an operator RKHS. We demonstrate this using novel proof strategies that leverage a generalized representer theorem for Hilbert spaces and gradient flows over the space of functionals of a Hilbert space. We additionally show the operator learned in context is the Bayes Optimal Predictor in the infinite depth limit of the transformer. We then provide empirical validations of this optimality result and demonstrate that the parameters under which such gradient descent is performed are recovered through the continuum transformer training.

stat.ML↗

arXiv2025

VoxelFormer: Parameter-Efficient Multi-Subject Visual Decoding from fMRI

Recent advances in fMRI-based visual decoding have enabled compelling reconstructions of perceived images. However, most approaches rely on subject-specific training, limiting scalability and practical deployment. We introduce \textbf{VoxelFormer}, a lightweight transformer architecture that enables multi-subject training for visual decoding from fMRI. VoxelFormer integrates a Token Merging Transformer (ToMer) for efficient voxel compression and a query-driven Q-Former that produces fixed-size neural representations aligned with the CLIP image embedding space. Evaluated on the 7T Natural Scenes Dataset, VoxelFormer achieves competitive retrieval performance on subjects included during training with significantly fewer parameters than existing methods. These results highlight token merging and query-based transformers as promising strategies for parameter-efficient neural decoding.

cs.CV↗

arXiv2026

Mitigating Subject Dependency in EEG Decoding with Subject-Specific Low-Rank Adapters

Subject-specific distribution shifts represent a fundamental obstacle to developing foundation models for brain decoding. We propose the Subject-Specific Low-Rank Adapter (SuLoRA), a drop-in replacement for standard linear or convolutional layers that captures inter-subject variability by decomposing weights into a shared, subject-invariant component and a lightweight, low-rank correction unique to each subject. This explicit separation enables existing architectures to become robust to subject shifts without architectural redesign. We evaluate SuLoRA on MEG speech perception and EEG motor imagery tasks across CNN and transformer architectures. In the speech decoding task, SuLoRA exceeds the baseline performance with half of the parameters. On motor imagery dataset, SuLoRA outperforms both subject-agnostic models and independently trained subject-specific models. SuLoRA offers a practical path towards effective cross-subject foundation models for brain signal applications.

cs.LG↗

arXiv2025

Advances and Challenges in Semantic Textual Similarity: A Comprehensive Survey

Semantic Textual Similarity (STS) research has expanded rapidly since 2021, driven by advances in transformer architectures, contrastive learning, and domain-specific techniques. This survey reviews progress across six key areas: transformer-based models, contrastive learning, domain-focused solutions, multi-modal methods, graph-based approaches, and knowledge-enhanced techniques. Recent transformer models such as FarSSiBERT and DeBERTa-v3 have achieved remarkable accuracy, while contrastive methods like AspectCSE have established new benchmarks. Domain-adapted models, including CXR-BERT for medical texts and Financial-STS for finance, demonstrate how STS can be effectively customized for specialized fields. Moreover, multi-modal, graph-based, and knowledge-integrated models further enhance semantic understanding and representation. By organizing and analyzing these developments, the survey provides valuable insights into current methods, practical applications, and remaining challenges. It aims to guide researchers and practitioners alike in navigating rapid advancements, highlighting emerging trends and future opportunities in the evolving field of STS.

cs.CL↗

arXiv2026

Looped Diffusion Language Models

Masked diffusion models (MDMs) have emerged as a promising alternative to autoregressive models for language modeling, yet the effective design of transformer architectures for MDMs remains underexplored. In this paper, we show that selectively looping the early-middle transformer layers significantly improves both training efficiency and model performance in MDMs. We call this approach LoopMDM(Looped Masked Diffusion Model), which brings two key benefits: looping layers at training-time yields a depth-scaling effect without adding parameters, while varying the number of loops at inference-time enables flexible compute scaling. Despite the simplicity, the results are striking: across multiple pre-training corpora, LoopMDM matches the performance of same-size MDMs with up to 3.3 fewer training FLOPs, while its final performance outperforms them on various reasoning benchmarks, including up to 8.5 points on GSM8K. It even surpasses deeper non-looped MDMs trained with comparable per-step compute, indicating that selective looping is more effective than naive depth scaling. Furthermore, LoopMDM can scale inference-time compute by increasing the number of loops. Adaptively adjusting the number of loops throughout the sampling process further yields additional gains in compute efficiency while maintaining performance. Lastly, with attention analysis, we provide evidence that looping is effective in MDMs by promoting interactions among masked positions. Our code and weights will be publicly released.

cs.LG↗

arXiv2022

A Framework for Automating Deployment and Evaluation of Blockchain Network

Blockchain network deployment and evaluation have become prevalent due to the demand for private blockchains by enterprises, governments, and edge computing systems. Whilst a blockchain network's deployment and evaluation are driven by its architecture, practitioners still need to learn and carry out many repetitive and error-prone activities to transform architecture into an operational blockchain network and evaluate it. Greater efficiency could be gained if practitioners focus solely on the architecture design, a valuable and hard-to-automate activity, and leave the implementation steps to an automation framework. This paper proposes an automation framework called NVAL (Network Deployment and Evaluation Framework), which can deploy and evaluate blockchain networks based on their architecture specifications. The key idea of NVAL is reusing and combining the existing automation scripts and utilities of various blockchain types to deploy and evaluate incoming blockchain network architectures. We propose a novel meta-model to capture blockchain network architectures as computer-readable artefacts and employ a state-space search approach to plan and conduct their deployment and evaluation. An evaluative case study shows that NVAL successfully combines seven deployment and evaluation procedures to deploy 65 networks with 12 different architectures and generate 295 evaluation datasets whilst incurring a negligible processing time overhead.

cs.SE↗

arXiv2026

Assessing Reliability of BERT-Based Models on Question Answering Tasks

Reliability estimation of large language models is in many cases as crucial as their accuracy, as reliable models are more trustworthy, robust, and suitable for practical applications. Recent advancements in natural language processing (NLP), particularly those based on transformer architectures, have significantly accelerated progress across various NLP tasks. This study focuses on the reliability of transformer-based question answering (QA) models, specifically BERT models and its variants (RoBERTa, ALBERT, DistilBERT). These encoder-only pretrained transformers have demonstrated remarkable accuracy in QA tasks that can be treated as classification tasks. However, their reliability remains underexplored. This study evaluates the reliability of four BERT-based models by assessing response stability under two conditions: (1) internal model variations induced via Monte Carlo Dropout (MCD) and (2) input perturbations through paraphrasing. Using the SQuAD and QuAC datasets, we investigate how dropout rates affect prediction consistency and whether lexical changes impact answer stability. Our findings reveal that RoBERTa maintains higher reliability, whereas AlBERT and DistilBERT exhibit significant inconsistencies. Statistical analyses confirm that enabling MCD during prediction does not disrupt inference dynamics, validating its effectiveness as a reliability metric. These findings underscore the importance of evaluating both accuracy and stability in QA models to ensure stability in real-world applications.

cs.CL↗