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AI-enabled Low-Cost 3D Maize Ear Morphometry Platform at Breeding Scale

Maize ear geometry (length, width, curvature, and volume) is closely tied to yield and grain-filling outcomes, but existing high-throughput phenotyping pipelines remain constrained by the cost, labor, and specialized hardware they require. We developed and validated a low-cost pipeline that reconstructs a watertight 3-D mesh of a maize ear from a single 20-second video captured with a consumer-grade DSLR on a motorized turntable under uniform LED illumination. Camera poses from a multi-seed COLMAP procedure initialize a Neural Radiance Field (NeRF), and a cylindrical holder of known diameter, visible in every frame, provides automatic metric scaling with downstream geometric quality control. Applied to 300 ears spanning a diverse maize inbred panel, 250 (83.3%) passed automated processing and quality control. Skeleton length agreed with manual caliper measurements across all 250 ears (R^2 = 0.964, RMSE = 4.68 mm), and convex-hull volume agreed with water-displacement volume on a 15-ear subset spanning the full size range (R^2 = 0.982, RMSE = 5.26 mL). Residual length error grew with ear curvature, whereas bounding-box height, which records the same straight-line chord as calipers, showed no such trend; the discrepancy therefore originates in the measurement definition, since calipers record the chord while skeleton length traces the geodesic arc. The capture hardware costs approximately 607 USD, and operator involvement fell from roughly five minutes to one minute per ear, with all downstream processing running unattended. The platform provides a foundation for breeding-scale 3-D ear phenotyping.

cs.CV

Behavior--Realization Separation for Constrained Physical Human--Robot Interaction

Physical human--robot interaction software often couples desired-behavior specification with constrained realization; we treat these as separate layers. A \emph{behavior layer} supplies a desired contact-port acceleration $a_k^{\mathrm{id}}=f_θ(e_k,\dot e_k,F_{h,k})$. A \emph{realization layer} converts it into constrained robot commands and reports total desired-versus-realized acceleration error instead of hiding it in saturation. A same-objective unconstrained counterfactual separates regularization from constraint intervention, while plant data expose model error. This paper implements a receding-horizon quadratic program realizing memoryless affine behaviors. Changing the behavior modifies objective coefficients through $(C_θ,G_θ)$ while the robot-command variable and feasible set remain unchanged. A planar study instantiates impedance and admittance; the same running layer accepts an impedance--admittance--impedance reassignment without reconstruction, under its existing rate limit. On a torque-controlled 7-DOF Franka FR3 in MuJoCo, the runtime freezes task-space dynamics per solve and enforces torque feasibility across its horizon. Under a sustained 20~N push, it holds a slack-relaxed workspace boundary to within approximately 0.1--0.2~mm, versus 4.4~cm (impedance) and 4.7~cm (admittance) overshoot from instantaneous clipping. A derated actuator budget then activates the torque constraint: horizon-wide enforcement keeps its frozen-model plan feasible to $2.1\times10^{-4}$~N$\cdot$m, whereas a first-step-only ablation plans up to 11.329~N$\cdot$m beyond budget; on the executed nonlinear plant, where both share the same local-model error, the gap is smaller but still favors horizon-wide enforcement (0.161 vs.\ 0.380~N$\cdot$m). These results are a focused proof of behavior--realization separation.

cs.RO

AI-based single-shot structured-light depth reconstruction for real-time laparoscopic surgical guidance

Significance. Accurate intraoperative depth perception is important for autonomous and semi-autonomous robotic laparoscopic surgery. Conventional fringe projection profilometry can achieve millimeter-scale accuracy but often requires multi-shot acquisition, digital-micromirror-device projection, and projector-camera synchronization, complicating integration into compact laparoscopic systems. Aim. To develop a synchronization-free, single-shot depth-sensing platform using a passive LED-illuminated binary mask and a VQ-VAE prior with a custom U-Net depth head. Approach. A compact projection module was coupled to one channel of a dual-channel laparoscope, while the second channel imaged the fringe-illuminated target. A Zivid 3D camera acquired reference depth for 722 paired phantom images. Zivid depth maps were reprojected into the SSLE image frame for supervised training and evaluation. The VQ-VAE encoded each input into a discrete latent representation, and a latent-space U-Net predicted depth without a separate mask-prediction branch. Results. Using a fixed train/validation/test split, the proposed model achieved an MAE of 3.70 mm, AbsRel of 0.0326, delta=1.1 accuracy of 0.962, and delta=1.1^2 accuracy of 0.970. It achieved lower MAE than the dual U-Net MaskNet + DepthNet baseline and outperformed off-the-shelf monocular depth models in MAE, AbsRel, and threshold accuracy. The pipeline operated at 26.0 Hz over 301 consecutive frames on an NVIDIA A100 GPU. Conclusions. The LED-illuminated binary-pattern platform with latent-space depth reconstruction enables synchronization-free, video-rate endoscopic depth estimation. Results demonstrate Zivid-referenced phantom reconstruction without an explicit segmentation stage, while emphasizing the importance of dataset size and SSLE-Zivid calibration accuracy.

eess.IV

Towards patient-specific optimization for mandibular reconstruction planning based on predicted bone-union propensity

Mandibular reconstruction with vascularized bone grafts is complicated by donor-host nonunion, and virtual surgical planning produces a geometric plan rather than optimizing for bone-union propensity at the donor-host interface. We present OsteoOpt++, an image-to-decision planning loop for patient-specific mandibular reconstruction. Pre-operative computed tomography (CT) is converted into a personalized digital twin through template-to-patient registration and CT-derived updates of the muscle and temporomandibular-joint parameters. Bayesian optimization with an expected-improvement-plus acquisition rule then searches six clinically controllable cut-plane and donor-positioning variables under an apposition-driven objective and a safety-factor-regularized variant. The workflow was evaluated on three generic defects (body, symphysis, and ramus-body) and four patient-specific cases, three of which were used for optimization and all four for retrospective longitudinal spatial analysis. In the generic cases, against the surgeon's geometric plan, cycle-averaged donor-mandible apposition increased by up to 29 percentage points; in the patient-specific cases, against the surgeon-implemented day-5 postoperative configuration, by up to 26 percentage points. A +/-10% sensitivity analysis over eleven modeling parameters capped the change in the apposition-driven objective at approximately 3% (generic) and approximately 4% (patient-specific), and across the four longitudinal cases the Dice overlap between predicted apposition and year-1 bone formation ranged from 70.1% to 84.9%, with centroid shifts of 0.24 to 1.82 mm. Together, these results support the feasibility-stage use of OsteoOpt++ to compare candidate reconstructions using apposition-derived predictions of bone-union propensity. The optimization and patient-specific modeling code is open source at https://github.com/hamidreza-aftabi/OsteoOpt.

cs.CV

BEAM3R: Beam's-eye-view architecture with Mamba-3 for implicit dose reconstruction

To enable accurate and rapid photon control point and proton beamlet dose calculation in the DoseRAD2026 challenge, we present BEAM3R, a dose estimation framework operating in beam's-eye-view (BEV). Our core innovation combines a Mamba-3 state-space depth-sequence core with physics-based transport conditioning to model long-range depth transport without expensive 3D convolutions. BEAM3R shares a 2D CNN encoder-decoder architecture for photon and proton dose tasks, processing per-plane BEV slices. Proton beamlets are conditioned on water equivalent thickness and remaining range, encoding the parameters determining Bragg peak position. Photon models use a bidirectional Mamba-3 core to capture dose contributions from materials downstream of the calculation point, while the proton model uses a forward core with learned energy-prefix tokens and a Bragg-peak refinement module. To reduce interpolation artifacts and support high spatial resolution, we introduce axial grid alignment of BEV lattices with CT slices and an implicit super-resolution representation via sub-pixel phase packing, evaluated by a differentiable Triton-accelerated resampler that reconstructs packed cubic B-spline coefficients directly in CT space. For MRI-based tasks, synthetic CTs (sCT) are generated by a patch-based conditional GAN with a SwinUNETR backbone. On the preliminary DoseRAD2026 test set, CT-to-photon and CT-to-proton models achieved 1%/1 mm local gamma pass rates of 96.8% and 96.0%, with stratified plan-level MAEs of 0.0041 and 0.0079. Substituting sCT reduced gamma pass rates to 89.7% for photon and 75.4% proton plan level doses, with stratified plan-level MAEs of 0.0093 and 0.0336. Standardised runtimes were 23.4 s and 18.4 s for CT-to-photon and CT-to-proton prediction, increasing to 39.7 s and 42.8 s for the corresponding MRI-based pipelines.

physics.med-ph

Security Science (SecSci), Basic Concepts and Mathematical Foundations

This textbook compiles the lecture notes from security courses taught at Oxford in the 2000s, at Royal Holloway in the 2010s, and currently in Hawaii. The early chapters are suitable for a first course in security. The middle chapters have been used in advanced courses. Towards the end there are also some research problems.

cs.CR

Fully Distributed GNE Algorithms for Multi-Robot Placement without Consensus on Multipliers

Recent machine learning research has increasingly focused on equilibrium analysis in non-cooperative games rather than solely on optimal solutions. Many such problems involve shared constraints and can be formulated as Generalized Nash Equilibrium Problems (GNEPs). For strongly monotone games, existing methods compute consensus-based variational GNEs (v-GNEs) by exchanging Lagrange multipliers. We propose a fully distributed continuous-time algorithm for shared linear equality constraints that converges without multiplier exchange and reaches any GNE, reducing communication overhead and improving privacy. Discrete-time schemes are also provided, and the method is validated on a multi-robot placement task.

cs.LG

TSExplorer: An interactive data annotation and exploration tool for time-series data

We present TSExplorer, a cross-platform tool for interactive annotation and exploration of time-series data. The tool enables users to inspect high-dimensional datasets through multiple complementary 2D visualizations derived from high-dimensional feature representations. TSExplorer is designed as a general-purpose research tool supporting a wide range of workflows, including exploratory data analysis, annotation of unlabeled or partially-labeled datasets, comparison of feature representations, and post-hoc inspection and refinement of existing labels with interactive visual feedback.

cs.HC

Towards a universal language of concepts: A survey

Humans can learn and generalize novel concepts from sparse data because they express knowledge in rich structural formats. In this paper, we propose that programs are a strong candidate for universal representation of concepts. We review computational models of concept learning that use programs as their concept representation and evaluate their contribution toward a universal representational language.

cs.AI

VIBE: Video Instruction-aligned Background music gEneration

Current video-to-music (V2M) models lack semantic control and fail to penalize instruction violations, largely due to their reliance on reconstruction objectives and the representational bottleneck of static cross-modal conditioning in Diffusion Autoregressive (DAR) architectures. To resolve this, we introduce VIBE, a novel text-and-video-to-music (T+V2M) generation model that leverages: (1) Conditioning Connection, a depth-wise cross-layer conditioning mechanism that dynamically bridges the planning and diffusion refinement heads and (2) a comprehensive reward modeling taxonomy, optimizing for both hard, verifiable constraints (e.g., tempo, key) and soft, subjective qualities (e.g., musicality, multimodal alignment) with a structured 5-stage training curriculum. Upon evaluation using audio-visual alignment, instruction following, and audio quality metrics, along with a subjective human evaluation study, we observe that VIBE demonstrates enhanced controllability and instruction adherence while performing comparably to most evaluated baselines on generation fidelity and multimodal alignment.

cs.SD

MultiGhostBench: A Multilingual Benchmark for Long-Form LLM-Generated Text Attribution under Distribution Shifts

While existing work on LLM authorship attribution (AA) has made progress, available benchmarks remain limited, often focusing on English, controlled settings, or relatively outdated models, with the few multilingual studies considering only relatively short texts. We introduce MultiGhostBench, a multilingual benchmark comprising 928 books generated by five recent LLMs across six languages and three scripts, with an average length of approximately 59K words per book. The benchmark supports evaluation under domain, author, and language shifts. Evaluation of representative AA methods shows that no single method consistently performs best across settings, and performance generally degrades under distribution shifts. Transformer-based detectors can retain generator-related information across languages, although transfer effectiveness varies by language pair, whereas statistical and fingerprint-based detectors are more language-dependent. We envision MultiGhostBench as a valuable resource for the development and evaluation of robust AA methods. The dataset and code can be found at https://github.com/GrecoMT/MultiGhostBench.

cs.CL

CyrillicQA: The Influence of Phonetically Encoded Secret Language on LLM Performance

Due to the selection of their training data, large language models (LLMs) perform best on standard-language inputs from languages using the Latin alphabet with large speaker populations, while disadvantaging other language varieties. Nevertheless, they can also be a versatile tool for preserving precisely such endangered languages. But do they also possess the necessary creativity and capacity for abstraction to decode phonetically encoded language the same way humans do?

cs.CL

A Non-Formulable Theorem: A Fundamental Limit of Finite Syntactic Systems and Its Consequences for Security and AI

For every coherent and sufficiently expressive finite syntactic system S, we prove the existence of at least one theorem that S cannot produce autonomously. The result is a metatheorem: it proves the existence of a theorem, and applies to every finite syntactic system - security mechanisms, AI systems, formal verifiers, legal systems, economic models, and the formal system in which it is itself proved.

cs.CR

Visual Framing for News Stance Detection via Image Generation

Article-level news stance detection aims to identify the perspective of news articles toward social issues. Despite advances in stance detection and its importance for trustworthy media environments, news articles pose distinct challenges because their stances are often implicit, subtly conveyed through journalistic framing, and embedded in long, structurally complex texts. To address these challenges, we introduce VFStance, which leverages visual framing to make implicit stance cues more explicit via image generation. In evaluation experiments, we demonstrate the effectiveness of VFStance over existing methods and the contribution of visual framing to its performance. Finally, a controlled user study (N=200) in a snippet-based news consumption setting further demonstrates that VFStance can make stance signals visually salient and highlights its potential use beyond automated stance detection.

cs.CL

Decentralized Vision-Based Autonomous Aerial Wildlife Monitoring

Wildlife field operations demand efficient parallel deployment methods to identify and interact with specific individuals, enabling simultaneous collective behavioral analysis, and health and safety interventions. Previous robotics solutions approach the problem from the herd perspective, or are manually operated and limited in scale. We propose a decentralized vision-based multi-quadrotor system for wildlife monitoring that is scalable, low-bandwidth, and sensor-minimal (single onboard RGB camera). Our approach enables robust identification and tracking of large species in their natural habitat. We develop novel vision-based coordination and tracking algorithms designed for dynamic, unstructured environments without reliance on centralized communication or control. We validate our system through real-world experiments, demonstrating reliable deployment in diverse field conditions.

cs.RO

Transformer-Based Autonomous Driving Models and Deployment-Oriented Compression: A Survey

Transformer-based models are becoming a central paradigm in autonomous driving because they can capture long-range spatial dependencies, multi-agent interactions, and multimodal context across perception, prediction, and planning. At the same time, their deployment in real vehicles remains difficult because high-capacity attention-based architectures impose substantial latency, memory, and energy overhead. This survey reviews representative Transformer-based autonomous driving models and organizes them by task role, sensing configuration, and architectural design. More importantly, it examines these models from a deployment-oriented perspective and analyzes how efficiency constraints reshape model design choices in practice. We further review compression and acceleration strategies relevant to Transformer-based driving systems, including quantization, pruning, knowledge distillation, low-rank approximation, and efficient attention, and discuss their benefits, limitations, and task-dependent applicability. Rather than treating compression as an isolated post-processing step, we highlight it as a system-level design consideration that directly affects deployability, robustness, and safety. Finally, we identify open challenges and future research directions toward standardized, safety-aware, and hardware-conscious evaluation of efficient autonomous driving systems.

cs.LG

Vision-Language Models Suppress Female Representations Under Ambiguous Input

Alignment teaches vision-language models (VLMs) to avoid expressing demographic biases, and when gender is clearly visible they largely succeed. Far less is known about ambiguous inputs (a worker in full gear, a figure seen from behind), cases common in practice yet rarely studied. We find that minimal prompting pressure exposes occupation-gender defaults when prompting ambiguous input images, with models collapsing to male even for strongly female-stereotyped occupations. But do these outputs reflect what models actually encode internally? We introduce LALS (Latent Association Leaning Score), a zero-shot metric that projects visual-token activations into the model's text-embedding space to measure concept associations per token and layer. Across 15 occupations, over 800 gender-ambiguous images, and four VLMs, internal representations and outputs often become systematically decoupled: models often encode a female association internally yet output male. Layer-wise analysis reveals an asymmetric filter: male signal amplifies end-to-end while female signal peaks mid-network and is suppressed before generation. A color ablation shows that culturally loaded visual cues such as clothing color further modulate these internal associations.

cs.CV

Unsupervised Partner Design Enables Robust Ad-hoc Teamwork

We introduce Unsupervised Partner Design (UPD), a population-free multi-agent reinforcement learning method for robust ad-hoc teamwork. UPD generates training partners on-the-fly and selects them adaptively based on a learnability criterion, removing the need for pre-trained partner populations or manual parameter tuning. We show that this simple mechanism enables effective partner diversity and can be extended to joint partner-environment selection when a procedural level generator is available. Across Level-Based Foraging, Overcooked-AI, and the Overcooked Generalisation Challenge, UPD consistently achieves strong performance compared to both population-based and population-free baselines. In a human-AI user study, agents trained with UPD achieve higher returns and are rated as more adaptive, more human-like, and less frustrating than all evaluated baseline methods.

cs.LG