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arXiv · 2206.05228

Dynamics of sparse Boolean networks with multi-node and self-interactions

Christian John Hurry·Alexander Mozeika·Alessia Annibale
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Abstract

We analyse the equilibrium behaviour and non-equilibrium dynamics of sparse Boolean networks with self-interactions that evolve according to synchronous Glauber dynamics. Equilibrium analysis is achieved via a novel application of the cavity method to the temperature-dependent pseudo-Hamiltonian that characterises the equilibrium state of systems with parallel dynamics. Similarly, the non-equilibrium dynamics can be analysed by using the dynamical version of the cavity method. It is well known, however, that when self-interactions are present, direct application of the dynamical cavity method is cumbersome, due to the presence of strong memory effects, which prevent explicit analysis of the dynamics beyond a few time steps. To overcome this difficulty, we show that it is possible to map a system of $N$ variables to an equivalent bipartite system of $2N$ variables, for which the dynamical cavity method can be used under the usual one time approximation scheme. This substantial technical advancement allows for the study of transient and long-time behaviour of systems with self-interactions. Finally, we study the dynamics of systems with multi-node interactions, recently used to model gene regulatory networks, by mapping this to a bipartite system of Boolean variables with 2-body interactions. We show that when interactions have a degree of bidirectionality such systems are able to support a multiplicity of diverse attractors, an important requirement for a gene-regulatory network to sustain multi-cellular life.

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Christian John Hurry, Alexander Mozeika, Alessia Annibale. 2022-06-10. Dynamics of sparse Boolean networks with multi-node and self-interactions. https://doi.org/10.1088/1751-8121%2Fac9165

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