Still More Shades of Null: An Evaluation Suite for Responsible Missing Value Imputation

Abstract

Data missingness is a practical challenge of sustained interest to the scientific community. In this paper, we present Shades-of-Null, an evaluation suite for responsible missing value imputation. Our work is novel in two ways (i) we model realistic and socially-salient missingness scenarios that go beyond Rubin's classic Missing Completely at Random (MCAR), Missing At Random (MAR) and Missing Not At Random (MNAR) settings, to include multi-mechanism missingness (when different missingness patterns co-exist in the data) and missingness shift (when the missingness mechanism changes between training and test) (ii) we evaluate imputers holistically, based on imputation quality and imputation fairness, as well as on the predictive performance, fairness and stability of the models that are trained and tested on the data post-imputation. We use Shades-of-Null to conduct a large-scale empirical study involving 29,736 experimental pipelines, and find that while there is no single best-performing imputation approach for all missingness types, interesting trade-offs arise between predictive performance, fairness and stability, based on the combination of missingness scenario, imputer choice, and the architecture of the predictive model. We make Shades-of-Null publicly available, to enable researchers to rigorously evaluate missing value imputation methods on a wide range of metrics in plausible and socially meaningful scenarios.