Search arXivSearch

arXiv · 2411.08065

h-CMD: An efficient hybrid fast centroid and quasi-centroid molecular dynamics method for the simulation of vibrational spectra

Abstract

Developing efficient path integral (PI) methods for atomistic simulations of vibrational spectra in heterogeneous condensed phases and interfaces has long been a challenging task. Here, we present the h-CMD method, short for hybrid centroid molecular dynamics, that combines the recently introduced fast quasi-CMD (f-QCMD) method with fast CMD (f-CMD). In this scheme, molecules that are believed to suffer more seriously from the curvature problem of CMD, e.g., water, are treated with f-QCMD, while the rest, e.g., solid surfaces, are treated with f-CMD. To test the accuracy of the newly introduced scheme, the infrared spectra of the interfacial D2O confined in the archetypal ZIF-90 framework are simulated using h-CMD compared to a variety of other PI methods, including thermostatted ring-polymer molecular dynamics (T-RPMD) and partially adiabatic CMD as well as f-CMD and experiment as reference. Comparisons are also made to classical MD, where nuclear quantum effects are neglected entirely. Our detailed comparisons at different temperatures of 250-600 K show that h-CMD produces O-D stretches that are in close agreement with the experiment, correcting the known curvature problem and red-shifting of the stretch peaks of CMD. h-CMD also corrects the known issues associated with too artificially dampened and broadened spectra of T-RPMD, which leads to missing the characteristic doublet feature of the interfacial confined water, rendering it unsuitable for these systems. The new h-CMD method broadens the applicability of f-QCMD to heterogeneous condensed phases and interfaces, where defining curvilinear coordinates for the entire system is not feasible.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Dil K. Limbu, Nathan London, Md Omar Faruque, Mohammad R. Momeni. 2024-11-11. h-CMD: An efficient hybrid fast centroid and quasi-centroid molecular dynamics method for the simulation of vibrational spectra. https://doi.org/10.1063/5.0248115

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Global approximations to the error function of real argument for vectorized computation

The error function of real argument can be approximated to a given uniform relative accuracy by a single closed-form expression for the whole variable range either in terms of addition, multiplication, division, and square root operations only, or also using the exponential function. The coefficients have been tabulated for up to 128-bit precision. Tests of a computer code implementation using the standard single- and double-precision floating-point arithmetic show good performance and vectorizability. Approximations to the complementary error function have also been found, including those where only additions, multiplications, and one division are needed to reach a uniform absolute accuracy.

physics.chem-ph

From Heuristics to Machine Learning: The Performance Ceiling for Single-Ion Magnets and Its Electronic Origin

Machine learning (ML) is expected to speed up the discovery of single-ion magnets (SIMs), but does the structural information available before synthesis allow such predictions? For 1215 lanthanide complexes from the SIMDAVIS 1.2.1 database we compared three increasing levels of structural description: tabular features of the coordination site, continuous symmetry measures of the coordination polyhedron, and the complete 3D arrangement of atoms. All three converge to an accuracy near 76%, only slightly above the 71% of the single rule "predict SIM for Dy3+". To explain the failures, we combined multireference ab initio calculations with an inspection of the structures behind the high-confidence errors. The SIMs missed by the geometric models are field-induced relaxers whose ground Kramers doublets are prone to tunnelling, a property invisible to geometric descriptors. Many false positives contain several lanthanide centers or radicals, so their relaxation is collective and outside the single-ion picture. The electronic-structure and connectivity information needed to identify SIMs is therefore not accessible to geometric methods alone. Geometric models remain useful: restricting the screening to compounds with high prediction confidence raises the accuracy to 88% while retaining 48% of the dataset. Building on the analysis of the failures, we propose a strategy that combines simple filters for nuclearity and for radicals with ligand-field descriptors from ab initio calculations.

physics.chem-ph

Composition-Dependent Self-Diffusion Coefficients in Liquid Mixtures from Hybrid Machine Learning

Self-diffusion coefficients are key descriptors of molecular mobility, yet experimental data remain scarce, highlighting the need for reliable prediction methods. In previous work, we introduced the hybrid Enhanced Stokes-Einstein (ESE) model, which advanced the state of the art in the physically consistent prediction of self-diffusion coefficients of solutes at infinite dilution in pure solvents by integrating the Stokes-Einstein equation with machine learning (ML). Here, we extend this approach to concentration-dependent self-diffusion coefficients and multicomponent solvents with HADES. This hybrid architecture leverages a deep-set neural network to connect pure-component and mixture prediction within a single framework. HADES predicts self-diffusion coefficients in liquid mixtures with any number of components at any composition and temperature. The only required inputs are SMILES-encoded molecular structures of the components and the pure-component viscosities, making the method broadly applicable. Trained and evaluated on a comprehensive dataset of 2526 data points for 600 systems, HADES significantly outperforms benchmark prediction methods. The trained model and its source code are fully disclosed, and the application is available via an interactive website https://ml-prop.mv.rptu.de/.

physics.chem-ph