Search arXivSearch

arXiv · 2506.00138

Intrinsic Goals for Autonomous Agents: Model-Based Exploration in Virtual Zebrafish Predicts Ethological Behavior and Whole-Brain Dynamics

Abstract

Autonomy is a hallmark of animal intelligence, enabling adaptive and intelligent behavior in complex environments without relying on external reward or task structure. Existing reinforcement learning approaches to exploration in reward-free environments, including a class of methods known as model-based intrinsic motivation, exhibit inconsistent exploration patterns and do not converge to an exploratory policy, thus failing to capture robust autonomous behaviors observed in animals. Moreover, systems neuroscience has largely overlooked the neural basis of autonomy, focusing instead on experimental paradigms where animals are motivated by external reward rather than engaging in ethological, naturalistic and task-independent behavior. To bridge these gaps, we introduce a novel model-based intrinsic drive explicitly designed after the principles of autonomous exploration in animals. Our method (3M-Progress) achieves animal-like exploration by tracking divergence between an online world model and a fixed prior learned from an ecological niche. To the best of our knowledge, we introduce the first autonomous embodied agent that predicts brain data entirely from self-supervised optimization of an intrinsic goal -- without any behavioral or neural training data -- demonstrating that 3M-Progress agents capture the explainable variance in behavioral patterns and whole-brain neural-glial dynamics recorded from autonomously behaving larval zebrafish, thereby providing the first goal-driven, population-level model of neural-glial computation. Our findings establish a computational framework connecting model-based intrinsic motivation to naturalistic behavior, providing a foundation for building artificial agents with animal-like autonomy.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Reece Keller, Alyn Kirsch, Felix Pei, Xaq Pitkow, Leo Kozachkov, Aran Nayebi. 2025-10-24. Intrinsic Goals for Autonomous Agents: Model-Based Exploration in Virtual Zebrafish Predicts Ethological Behavior and Whole-Brain Dynamics. https://arxiv.org/abs/2506.00138

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Only what exists can cause: An intrinsic powers view of free will

This essay addresses the implications of integrated information theory (IIT) for free will. IIT is a theory of what consciousness is and of how its presence and quality can be accounted for in physical terms. According to IIT, the presence of consciousness is accounted for by a maximum of cause-effect power in the brain. Moreover, the way an experience feels is accounted for by how that cause-effect power is structured. If IIT is right, we do have free will in a genuine sense: we have alternatives, reasons, and values, we make decisions, and we-not our neurons or atoms-are the cause of our willed actions and bear responsibility for them. IIT's argument for genuine free will hinges on the proper understanding of consciousness as intrinsic existence, captured by its intrinsic powers ontology: what exists absolutely, in physical terms, are intrinsic entities, and only what exists can cause.

q-bio.NC

Seeing the imagined: latent functional alignment in visual imagery decoding from fMRI data

Recent progress in visual brain decoding from fMRI has been enabled by large-scale datasets such as the Natural Scenes Dataset (NSD) and powerful diffusion-based generative models. While current pipelines are primarily optimized for perception, their performance under mental-imagery remains less well understood. In this work, we study how a state-of-the-art (SOTA) perception decoder (DynaDiff) can be adapted to reconstruct imagined content from the NSD-Imagery benchmark. We propose a latent functional alignment (LFA) approach that maps imagery-evoked activity to the pretrained model's semantic content-enriched conditioning space, by adding a simple alignment module, while keeping the original remaining components frozen. To mitigate the limited amount of matched imagery-perception supervision, we further introduce a neural retrieval-based augmentation strategy that selects semantically related NSD perception trials from the same participants. Across four subjects, LFA consistently improves high-level semantic reconstruction metrics relative to the frozen pretrained baseline and a voxel-space ridge alignment baseline, and enables above-chance decoding from multiple cortical regions. These results suggest that semantic structure learned from perception can be leveraged to stabilize and improve visual imagery decoding under out-of-distribution conditions.

q-bio.NC

Deep Learning in Infant Functional Neuroimaging: Challenges, Advances, and Future Directions

Infancy is a critical developmental window characterized by rapid functional brain reorganization, during which large-scale networks emerge, individualized connectome signatures continue to form, and early deviations may shape long-term cognitive and clinical outcomes. Functional MRI (fMRI) offers an opportunity to study these processes in vivo, yet extracting developmentally meaningful information from it remains challenging due to comparatively short scan duration, structured motion artifacts, variable scan states, and rapid brain maturation. Amid these challenges, deep learning has expanded the capacity of computational neuroimaging by learning robust representations from noisy, high-dimensional data, integrating complex spatial and temporal information, and capturing the nonlinear and rapidly evolving organization of the developing brain. Here, we review recent advances in deep learning for infant functional neuroimaging, synthesizing progress across input representation formatting, population and individualized brain mapping, longitudinal trajectory forecasting, robust and explainable model evaluation, and biological translation. Collectively, these methodological advances mark a paradigm shift in infant functional neuroimaging from descriptive, group-level analyses toward reliable, individualized, and developmentally grounded models. Future progress will depend on larger and more diverse longitudinal datasets, developmentally appropriate model designs, rigorous and standardized evaluation, and integration of computational predictions with biological mechanisms towards clinically meaningful outcomes. Addressing these priorities will help establish deep learning as a robust framework for understanding early functional brain development, identifying developmental variation at the individual level, and ultimately supporting earlier and precise assessment of neurodevelopmental risk.

q-bio.NC