Evaluating Ensemble and Deep Learning Models for Static Malware Detection with Dimensionality Reduction Using the EMBER Dataset

Abstract

This study investigates the effectiveness of several machine learning algorithms for static malware detection using the EMBER dataset, which contains feature representations of Portable Executable (PE) files. We evaluate eight classification models: LightGBM, XGBoost, CatBoost, Random Forest, Extra Trees, HistGradientBoosting, k-Nearest Neighbors (KNN), and TabNet, under three preprocessing settings: original feature space, Principal Component Analysis (PCA), and Linear Discriminant Analysis (LDA). The models are assessed on accuracy, precision, recall, F1 score, and AUC to examine both predictive performance and robustness. Ensemble methods, especially LightGBM and XGBoost, show the best overall performance across all configurations, with minimal sensitivity to PCA and consistent generalization. LDA improves KNN performance but significantly reduces accuracy for boosting models. TabNet, while promising in theory, underperformed under feature reduction, likely due to architectural sensitivity to input structure. The analysis is supported by detailed exploratory data analysis (EDA), including mutual information ranking, PCA or t-SNE visualizations, and outlier detection using Isolation Forest and Local Outlier Factor (LOF), which confirm the discriminatory capacity of key features in the EMBER dataset. The results suggest that boosting models remain the most reliable choice for high-dimensional static malware detection, and that dimensionality reduction should be applied selectively based on model type. This work provides a benchmark for comparing classification models and preprocessing strategies in malware detection tasks and contributes insights that can guide future system development and real-world deployment.