Early Detection of Pancreatic Cancer Using Multimodal Learning on Electronic Health Records

Mosbah Aouad; Anirudh Choudhary; Awais Farooq; Steven Nevers; Lusine Demirkhanyan; Bhrandon Harris; Suguna Pappu; Christopher Gondi; Ravishankar Iyer

arXiv · 2508.06627

Early Detection of Pancreatic Cancer Using Multimodal Learning on Electronic Health Records

Mosbah Aouad·Anirudh Choudhary·Awais Farooq·Steven Nevers·Lusine Demirkhanyan·Bhrandon Harris·Suguna Pappu·Christopher Gondi·Ravishankar Iyer

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Abstract

Pancreatic ductal adenocarcinoma (PDAC) is one of the deadliest cancers, and early detection remains a major clinical challenge due to the absence of specific symptoms and reliable biomarkers. In this work, we propose a new multimodal approach that integrates longitudinal diagnosis code histories and routinely collected laboratory measurements from electronic health records to detect PDAC up to one year prior to clinical diagnosis. Our method combines neural controlled differential equations to model irregular lab time series, pretrained language models and recurrent networks to learn diagnosis code trajectory representations, and cross-attention mechanisms to capture interactions between the two modalities. We develop and evaluate our approach on a real-world dataset of nearly 4,700 patients and achieve significant improvements in AUC ranging from 6.5% to 15.5% over state-of-the-art methods. Furthermore, our model identifies diagnosis codes and laboratory panels associated with elevated PDAC risk, including both established and new biomarkers. Our code is available at https://github.com/MosbahAouad/EarlyPDAC-MML.

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Mosbah Aouad, Anirudh Choudhary, Awais Farooq, Steven Nevers, Lusine Demirkhanyan, Bhrandon Harris, Suguna Pappu, Christopher Gondi, Ravishankar Iyer. 2025-08-18. Early Detection of Pancreatic Cancer Using Multimodal Learning on Electronic Health Records. https://arxiv.org/abs/2508.06627

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