End-to-End 4D Heart Mesh Recovery Across Full-Stack and Sparse Cardiac MRI

Yihong Chen; Jiancheng Yang; Deniz Sayin Mercadier; Hieu Le; Juerg Schwitter; Pascal Fua

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arXiv · 2509.12090

End-to-End 4D Heart Mesh Recovery Across Full-Stack and Sparse Cardiac MRI

Yihong Chen·Jiancheng Yang·Deniz Sayin Mercadier·Hieu Le·Juerg Schwitter·Pascal Fua

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Abstract

Reconstructing cardiac motion from CMR sequences is critical for diagnosis, prognosis, and intervention. Existing methods rely on complete CMR stacks to infer full heart motion, limiting their applicability during intervention when only sparse observations are available. We present TetHeart, the first end-to-end framework for unified 4D heart mesh recovery from both offline full-stack and intra-procedural sparse-slice observations. Our method leverages deformable tetrahedra to capture shape and motion in a coherent space shared across cardiac structures. Before a procedure, it initializes detailed, patient-specific heart meshes from high-quality full stacks, which can then be updated using whatever slices can be obtained in real-time, down to a single one during the procedure. TetHeart incorporates several key innovations: (i) an attentive slice-adaptive 2D-3D feature assembly mechanism that integrates information from arbitrary numbers of slices at any position; (ii) a distillation strategy to ensure accurate reconstruction under extreme sparsity; and (iii) a weakly supervised motion learning scheme requiring annotations only at keyframes, such as the end-diastolic and end-systolic phases. Trained and validated on three large public datasets and evaluated zero-shot on additional private interventional and public datasets without retraining, TetHeart achieves state-of-the-art accuracy and strong generalization in both pre- and intra-procedural settings. Code and dataset is available at https://github.com/Scalsol/TetHeart.

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Yihong Chen, Jiancheng Yang, Deniz Sayin Mercadier, Hieu Le, Juerg Schwitter, Pascal Fua. 2026-07-12. End-to-End 4D Heart Mesh Recovery Across Full-Stack and Sparse Cardiac MRI. https://arxiv.org/abs/2509.12090

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