Estimating Clinical Lab Test Result Trajectories from PPG using Physiological Foundation Model and Patient-Aware State Space Model -- a UNIPHY+ Approach

Minxiao Wang; Runze Yan; Carol Li; Saurabh Kataria; Xiao Hu; Matthew Clark; Timothy Ruchti; Timothy G. Buchman; Sivasubramanium V Bhavani; Randall J. Lee

arXiv · 2509.16345

Estimating Clinical Lab Test Result Trajectories from PPG using Physiological Foundation Model and Patient-Aware State Space Model -- a UNIPHY+ Approach

Minxiao Wang·Runze Yan·Carol Li·Saurabh Kataria·Xiao Hu·Matthew Clark·Timothy Ruchti·Timothy G. Buchman·Sivasubramanium V Bhavani·Randall J. Lee

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Abstract

Clinical laboratory tests provide essential biochemical measurements for diagnosis and treatment, but are limited by intermittent and invasive sampling. In contrast, photoplethysmogram (PPG) is a non-invasive, continuously recorded signal in intensive care units (ICUs) that reflects cardiovascular dynamics and can serve as a proxy for latent physiological changes. We propose UNIPHY+Lab, a framework that combines a large-scale PPG foundation model for local waveform encoding with a patient-aware Mamba model for long-range temporal modeling. Our architecture addresses three challenges: (1) capturing extended temporal trends in laboratory values, (2) accounting for patient-specific baseline variation via FiLM-modulated initial states, and (3) performing multi-task estimation for interrelated biomarkers. We evaluate our method on the two ICU datasets for predicting the five key laboratory tests. The results show substantial improvements over the LSTM and carry-forward baselines in MAE, RMSE, and $R^2$ among most of the estimation targets. This work demonstrates the feasibility of continuous, personalized lab value estimation from routine PPG monitoring, offering a pathway toward non-invasive biochemical surveillance in critical care.

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Minxiao Wang, Runze Yan, Carol Li, Saurabh Kataria, Xiao Hu, Matthew Clark, Timothy Ruchti, Timothy G. Buchman, Sivasubramanium V Bhavani, Randall J. Lee. 2025-09-19. Estimating Clinical Lab Test Result Trajectories from PPG using Physiological Foundation Model and Patient-Aware State Space Model -- a UNIPHY+ Approach. https://arxiv.org/abs/2509.16345

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