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arXiv · 2603.29807

BioNetFlux: A Python Framework for Reaction--Diffusion--Chemotaxis Simulations on One-Dimensional Network Geometries

Silvia Bertoluzza
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Abstract

We present BioNetFlux, an open-source Python framework for the numerical simulation of coupled systems of partial differential equations (PDEs) on one-dimensional multi-arc networks by the Hybridized Discontinuous Galerkin method. Its design targets biological transport phenomena on graph-like geometries that arise naturally in microfluidic organ-on-chip (OoC) devices, vascular networks, and in-vitro cell-migration assays.

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Silvia Bertoluzza. 2026-04-02. BioNetFlux: A Python Framework for Reaction--Diffusion--Chemotaxis Simulations on One-Dimensional Network Geometries. https://arxiv.org/abs/2603.29807

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