A Vision-Language Foundation Model for Precise and Comprehensive Brain Tumor Diagnosis from Preoperative Multimodal Data

Yinong Wang; Jianwen Chen; Zhou Chen; Shuwen Kuang; Haoning Jiang; Yanzhao Shi; Huichun Yuan; Yan-ran; Wang; Bing Wang; Lei Wu; Bin Tang; Li Meng; Baihua Luo; Bin Zhou; Wei Ding; Weiming Zhong; Wei Hou; Yuanbing Chen; Zhiping Wan; Wei Wang; Zhenkun Xiao; Wenwu Wan; Allen He; Yuyin Zhou; Longbo Zhang; Feifei Wang; Zhixiong Liu; Michael Iv; Xuan Gong; Liangqiong Qu

arXiv · 2609.16597

A Vision-Language Foundation Model for Precise and Comprehensive Brain Tumor Diagnosis from Preoperative Multimodal Data

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Abstract

We developed BrainVLM to classify all 12 World Health Organization (WHO) 2021 brain tumor types. BrainVLM integrates an uncertainty quantification strategy to indicate prediction reliability and a module for generating radiology reports to elucidate the clinical rationale. BrainVLM was trained on multi-modal data (MRI scans, demographics, and radiology reports) from 40,043 individuals. It was validated on 5,211 patients with pathologically confirmed brain tumors, including 3,877 held-out patients from the primary hospital and 1,334 patients from 11 independent hospitals. We further conducted two proof-ofconcept studies to validate its clinical utility in AI-clinician workflows: 1) a blinded multireader study where 12 neuroradiologists across varying experience levels interpreted 248 retrospective cases with or without AI assistance, and 2) a real-world prospective study in which 1,009 patients were independently and blindly assessed by BrainVLM and radiologists before surgery. Additionally, we demonstrated BrainVLM's utility in preoperative molecular subgroup prediction for adult-type diffuse gliomas, using a multi-center cohort of 632 patients. In primary evaluation, BrainVLM achieved an area under the curve (macro-AUC) of 0.85 (95% CI: 0.84-0.86), and an F1 score of 0.82 (95% CI: 0.81-0.83), surpassing neuroradiologists (F1 = 0.80 (95% CI: 0.79-0.81)). In external validation across 11 centers, BrainVLM achieved an AUC = 0.80 (95% CI: 0.79-0.82) and F1 = 0.75 (95% CI: 0.73-0.78), compared with F1=0.71 (95% CI: 0.69-0.73) for neuroradiologists. In prospective real-world evaluation, BrainVLM maintained performance comparable to neuroradiologists.

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Yinong Wang, Jianwen Chen, Zhou Chen, Shuwen Kuang, Haoning Jiang, Yanzhao Shi, Huichun Yuan, Yan-ran, Wang, Bing Wang, Lei Wu, Bin Tang, Li Meng, Baihua Luo, Bin Zhou, Wei Ding, Weiming Zhong, Wei Hou, Yuanbing Chen, Zhiping Wan, Wei Wang, Zhenkun Xiao, Wenwu Wan, Allen He, Yuyin Zhou, Longbo Zhang, Feifei Wang, Zhixiong Liu, Michael Iv, Xuan Gong, Liangqiong Qu. 2026-09-21. A Vision-Language Foundation Model for Precise and Comprehensive Brain Tumor Diagnosis from Preoperative Multimodal Data. https://arxiv.org/abs/2609.16597

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