arXiv subjects

Dimitris Samaras

Publications and source records attributed to Dimitris Samaras.

At least 55 records · Page 3Linked to original sources

arXiv2025

PixCell: A generative foundation model for digital histopathology images

The digitization of histology slides has revolutionized pathology, providing massive datasets for cancer diagnosis and research. Self-supervised and vision-language models have been shown to effectively mine large pathology datasets to learn discriminative representations. On the other hand, there are unique problems in pathology, such as annotated data scarcity, privacy regulations in data sharing, and inherently generative tasks like virtual staining. Generative models, capable of synthesizing realistic and diverse images, present a compelling solution to address these problems through image synthesis. We introduce PixCell, the first generative foundation model for histopathology images. PixCell is a diffusion model trained on PanCan-30M, a large, diverse dataset derived from 69,184 H&E-stained whole slide images of various cancer types. We employ a progressive training strategy and a self-supervision-based conditioning that allows us to scale up training without any human-annotated data. By conditioning on real slides, the synthetic images capture the properties of the real data and can be used as data augmentation for small-scale datasets to boost classification performance. We prove the foundational versatility of PixCell by applying it to two generative downstream tasks: privacy-preserving synthetic data generation and virtual IHC staining. PixCell's high-fidelity conditional generation enables institutions to use their private data to synthesize highly realistic, site-specific surrogate images that can be shared in place of raw patient data. Furthermore, using datasets of roughly paired H&E-IHC tiles, we learn to translate PixCell's conditioning from H&E to multiple IHC stains, allowing the generation of IHC images from H&E inputs. Our trained models are publicly released to accelerate research in computational pathology.

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arXiv2025

What about gravity in video generation? Post-Training Newton's Laws with Verifiable Rewards

Recent video diffusion models can synthesize visually compelling clips, yet often violate basic physical laws-objects float, accelerations drift, and collisions behave inconsistently-revealing a persistent gap between visual realism and physical realism. We propose $\texttt{NewtonRewards}$, the first physics-grounded post-training framework for video generation based on $\textit{verifiable rewards}$. Instead of relying on human or VLM feedback, $\texttt{NewtonRewards}$ extracts $\textit{measurable proxies}$ from generated videos using frozen utility models: optical flow serves as a proxy for velocity, while high-level appearance features serve as a proxy for mass. These proxies enable explicit enforcement of Newtonian structure through two complementary rewards: a Newtonian kinematic constraint enforcing constant-acceleration dynamics, and a mass conservation reward preventing trivial, degenerate solutions. We evaluate $\texttt{NewtonRewards}$ on five Newtonian Motion Primitives (free fall, horizontal/parabolic throw, and ramp sliding down/up) using our newly constructed large-scale benchmark, $\texttt{NewtonBench-60K}$. Across all primitives in visual and physics metrics, $\texttt{NewtonRewards}$ consistently improves physical plausibility, motion smoothness, and temporal coherence over prior post-training methods. It further maintains strong performance under out-of-distribution shifts in height, speed, and friction. Our results show that physics-grounded verifiable rewards offer a scalable path toward physics-aware video generation.

cs.CV↗

arXiv2025

CORA: Consistency-Guided Semi-Supervised Framework for Reasoning Segmentation

Reasoning segmentation seeks pixel-accurate masks for targets referenced by complex, often implicit instructions, requiring context-dependent reasoning over the scene. Recent multimodal language models have advanced instruction following segmentation, yet generalization remains limited. The key bottleneck is the high cost of curating diverse, high-quality pixel annotations paired with rich linguistic supervision leading to brittle performance under distribution shift. Therefore, we present CORA, a semi-supervised reasoning segmentation framework that jointly learns from limited labeled data and a large corpus of unlabeled images. CORA introduces three main components: 1) conditional visual instructions that encode spatial and contextual relationships between objects; 2) a noisy pseudo-label filter based on the consistency of Multimodal LLM's outputs across semantically equivalent queries; and 3) a token-level contrastive alignment between labeled and pseudo-labeled samples to enhance feature consistency. These components enable CORA to perform robust reasoning segmentation with minimal supervision, outperforming existing baselines under constrained annotation settings. CORA achieves state-of-the-art results, requiring as few as 100 labeled images on Cityscapes, a benchmark dataset for urban scene understanding, surpassing the baseline by $+2.3\%$. Similarly, CORA improves performance by $+2.4\%$ with only 180 labeled images on PanNuke, a histopathology dataset.

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arXiv2025

LBMamba: Locally Bi-directional Mamba

Mamba, a State Space Model (SSM) that accelerates training by recasting recurrence as a parallel scan, has recently emerged as a linearly-scaling alternative to self-attention. Because of its unidirectional nature, each state in Mamba only has information of its previous states and is blind to states after. Current Mamba-based computer-vision methods typically overcome this by augmenting Mamba's global forward scan with a global backward scan, forming a bi-directional scan to restore a full receptive field. However, this operation doubles the computational load, eroding much of the efficiency advantage that originally Mamba have. To eliminate this extra scans, we introduce LBMamba, a locally bi-directional SSM block that embeds a lightweight locally backward scan inside the forward scan and executes it in per-thread registers. Building on LBMamba, we present LBVim, a backbone that alternates scan directions every two layers to recover a global receptive field without extra backward sweeps. We validate our approach on both natural images and whole slide images (WSIs) and show that it constantly offers a superior performance-throughput trade-off. Under the same throughput, LBVim achieves 0.8% to 1.6% higher top-1 accuracy on the ImageNet-1K classification dataset, 0.6% to 2.7% higher mIoU on the ADE20K semantic segmentation dataset, 0.9% higher APb and 1.1% higher APm on the COCO detection dataset. Our method also boosts the accuracy of four SOTA Mamba models, namely VMamba, LocalVim, PlainMamba and Adventurer, by 0.5% to 3.4%. We integrate LBMamba into the SOTA pathology multiple instance learning (MIL) model, MambaMIL, which is unidirectional. Experiments on 3 public WSI classification datasets show that our method achieves a relative improvement of up to 3.06% better AUC, 3.39% better F1, 1.67% better accuracy. Our code is available at https://github.com/cvlab-stonybrook/LBMamba.

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arXiv2025

Fast constrained sampling in pre-trained diffusion models

Large denoising diffusion models, such as Stable Diffusion, have been trained on billions of image-caption pairs to perform text-conditioned image generation. As a byproduct of this training, these models have acquired general knowledge about image statistics, which can be useful for other inference tasks. However, when confronted with sampling an image under new constraints, e.g. generating the missing parts of an image, using large pre-trained text-to-image diffusion models is inefficient and often unreliable. Previous approaches either utilized backpropagation through the denoiser network, making them significantly slower and more memory-demanding than simple text-to-image generation, or only enforced the constraint locally, failing to capture critical long-range correlations in the sampled image. In this work, we propose an algorithm that enables fast, high-quality generation under arbitrary constraints. We show that in denoising diffusion models, we can employ an approximation to Newton's optimization method that allows us to speed up inference and avoid the expensive backpropagation operations. Our approach produces results that rival or surpass the state-of-the-art training-free inference methods while requiring a fraction of the time. We demonstrate the effectiveness of our algorithm under both linear (inpainting, super-resolution) and non-linear (style-guided generation) constraints. An implementation is provided at https://github.com/cvlab-stonybrook/fast-constrained-sampling.

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arXiv2025

Talking Head Generation via AU-Guided Landmark Prediction

We propose a two-stage framework for audio-driven talking head generation with fine-grained expression control via facial Action Units (AUs). Unlike prior methods relying on emotion labels or implicit AU conditioning, our model explicitly maps AUs to 2D facial landmarks, enabling physically grounded, per-frame expression control. In the first stage, a variational motion generator predicts temporally coherent landmark sequences from audio and AU intensities. In the second stage, a diffusion-based synthesizer generates realistic, lip-synced videos conditioned on these landmarks and a reference image. This separation of motion and appearance improves expression accuracy, temporal stability, and visual realism. Experiments on the MEAD dataset show that our method outperforms state-of-the-art baselines across multiple metrics, demonstrating the effectiveness of explicit AU-to-landmark modeling for expressive talking head generation.

cs.CV↗

arXiv2025

Multi-view Gaze Target Estimation

This paper presents a method that utilizes multiple camera views for the gaze target estimation (GTE) task. The approach integrates information from different camera views to improve accuracy and expand applicability, addressing limitations in existing single-view methods that face challenges such as face occlusion, target ambiguity, and out-of-view targets. Our method processes a pair of camera views as input, incorporating a Head Information Aggregation (HIA) module for leveraging head information from both views for more accurate gaze estimation, an Uncertainty-based Gaze Selection (UGS) for identifying the most reliable gaze output, and an Epipolar-based Scene Attention (ESA) module for cross-view background information sharing. This approach significantly outperforms single-view baselines, especially when the second camera provides a clear view of the person's face. Additionally, our method can estimate the gaze target in the first view using the image of the person in the second view only, a capability not possessed by single-view GTE methods. Furthermore, the paper introduces a multi-view dataset for developing and evaluating multi-view GTE methods. Data and code are available at https://www3.cs.stonybrook.edu/~cvl/multiview_gte.html

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arXiv2025

Measuring and Predicting Where and When Pathologists Focus their Visual Attention while Grading Whole Slide Images of Cancer

The ability to predict the attention of expert pathologists could lead to decision support systems for better pathology training. We developed methods to predict the spatio-temporal (where and when) movements of pathologists' attention as they grade whole slide images (WSIs) of prostate cancer. We characterize a pathologist's attention trajectory by their x, y, and m (magnification) movements of a viewport as they navigate WSIs using a digital microscope. This information was obtained from 43 pathologists across 123 WSIs, and we consider the task of predicting the pathologist attention scanpaths constructed from the viewport centers. We introduce a fixation extraction algorithm that simplifies an attention trajectory by extracting fixations in the pathologist's viewing while preserving semantic information, and we use these pre-processed data to train and test a two-stage model to predict the dynamic (scanpath) allocation of attention during WSI reading via intermediate attention heatmap prediction. In the first stage, a transformer-based sub-network predicts the attention heatmaps (static attention) across different magnifications. In the second stage, we predict the attention scanpath by sequentially modeling the next fixation points in an autoregressive manner using a transformer-based approach, starting at the WSI center and leveraging multi-magnification feature representations from the first stage. Experimental results show that our scanpath prediction model outperforms chance and baseline models. Tools developed from this model could assist pathology trainees in learning to allocate their attention during WSI reading like an expert.

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arXiv2025

Hummingbird: High Fidelity Image Generation via Multimodal Context Alignment

While diffusion models are powerful in generating high-quality, diverse synthetic data for object-centric tasks, existing methods struggle with scene-aware tasks such as Visual Question Answering (VQA) and Human-Object Interaction (HOI) Reasoning, where it is critical to preserve scene attributes in generated images consistent with a multimodal context, i.e. a reference image with accompanying text guidance query. To address this, we introduce $\textbf{Hummingbird}$, the first diffusion-based image generator which, given a multimodal context, generates highly diverse images w.r.t. the reference image while ensuring high fidelity by accurately preserving scene attributes, such as object interactions and spatial relationships from the text guidance. Hummingbird employs a novel Multimodal Context Evaluator that simultaneously optimizes our formulated Global Semantic and Fine-grained Consistency Rewards to ensure generated images preserve the scene attributes of reference images in relation to the text guidance while maintaining diversity. As the first model to address the task of maintaining both diversity and fidelity given a multimodal context, we introduce a new benchmark formulation incorporating MME Perception and Bongard HOI datasets. Benchmark experiments show Hummingbird outperforms all existing methods by achieving superior fidelity while maintaining diversity, validating Hummingbird's potential as a robust multimodal context-aligned image generator in complex visual tasks. Project page: https://roar-ai.github.io/hummingbird

cs.CV↗

arXiv2025

Low-Rank Head Avatar Personalization with Registers

We introduce a novel method for low-rank personalization of a generic model for head avatar generation. Prior work proposes generic models that achieve high-quality face animation by leveraging large-scale datasets of multiple identities. However, such generic models usually fail to synthesize unique identity-specific details, since they learn a general domain prior. To adapt to specific subjects, we find that it is still challenging to capture high-frequency facial details via popular solutions like low-rank adaptation (LoRA). This motivates us to propose a specific architecture, a Register Module, that enhances the performance of LoRA, while requiring only a small number of parameters to adapt to an unseen identity. Our module is applied to intermediate features of a pre-trained model, storing and re-purposing information in a learnable 3D feature space. To demonstrate the efficacy of our personalization method, we collect a dataset of talking videos of individuals with distinctive facial details, such as wrinkles and tattoos. Our approach faithfully captures unseen faces, outperforming existing methods quantitatively and qualitatively. We will release the code, models, and dataset to the public.

cs.CV↗

arXiv2025

GeoMaNO: Geometric Mamba Neural Operator for Partial Differential Equations

The neural operator (NO) framework has emerged as a powerful tool for solving partial differential equations (PDEs). Recent NOs are dominated by the Transformer architecture, which offers NOs the capability to capture long-range dependencies in PDE dynamics. However, existing Transformer-based NOs suffer from quadratic complexity, lack geometric rigor, and thus suffer from sub-optimal performance on regular grids. As a remedy, we propose the Geometric Mamba Neural Operator (GeoMaNO) framework, which empowers NOs with Mamba's modeling capability, linear complexity, plus geometric rigor. We evaluate GeoMaNO's performance on multiple standard and popularly employed PDE benchmarks, spanning from Darcy flow problems to Navier-Stokes problems. GeoMaNO improves existing baselines in solution operator approximation by as much as 58.9%.

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arXiv2025

Importance-Based Token Merging for Efficient Image and Video Generation

Token merging can effectively accelerate various vision systems by processing groups of similar tokens only once and sharing the results across them. However, existing token grouping methods are often ad hoc and random, disregarding the actual content of the samples. We show that preserving high-information tokens during merging - those essential for semantic fidelity and structural details - significantly improves sample quality, producing finer details and more coherent, realistic generations. Despite being simple and intuitive, this approach remains underexplored. To do so, we propose an importance-based token merging method that prioritizes the most critical tokens in computational resource allocation, leveraging readily available importance scores, such as those from classifier-free guidance in diffusion models. Experiments show that our approach significantly outperforms baseline methods across multiple applications, including text-to-image synthesis, multi-view image generation, and video generation with various model architectures such as Stable Diffusion, Zero123++, AnimateDiff, or PixArt-$α$.

cs.CV↗

arXiv2025

PathSegDiff: Pathology Segmentation using Diffusion model representations

Image segmentation is crucial in many computational pathology pipelines, including accurate disease diagnosis, subtyping, outcome, and survivability prediction. The common approach for training a segmentation model relies on a pre-trained feature extractor and a dataset of paired image and mask annotations. These are used to train a lightweight prediction model that translates features into per-pixel classes. The choice of the feature extractor is central to the performance of the final segmentation model, and recent literature has focused on finding tasks to pre-train the feature extractor. In this paper, we propose PathSegDiff, a novel approach for histopathology image segmentation that leverages Latent Diffusion Models (LDMs) as pre-trained featured extractors. Our method utilizes a pathology-specific LDM, guided by a self-supervised encoder, to extract rich semantic information from H\&E stained histopathology images. We employ a simple, fully convolutional network to process the features extracted from the LDM and generate segmentation masks. Our experiments demonstrate significant improvements over traditional methods on the BCSS and GlaS datasets, highlighting the effectiveness of domain-specific diffusion pre-training in capturing intricate tissue structures and enhancing segmentation accuracy in histopathology images.

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arXiv2025

Few-shot Personalized Scanpath Prediction

A personalized model for scanpath prediction provides insights into the visual preferences and attention patterns of individual subjects. However, existing methods for training scanpath prediction models are data-intensive and cannot be effectively personalized to new individuals with only a few available examples. In this paper, we propose few-shot personalized scanpath prediction task (FS-PSP) and a novel method to address it, which aims to predict scanpaths for an unseen subject using minimal support data of that subject's scanpath behavior. The key to our method's adaptability is the Subject-Embedding Network (SE-Net), specifically designed to capture unique, individualized representations for each subject's scanpaths. SE-Net generates subject embeddings that effectively distinguish between subjects while minimizing variability among scanpaths from the same individual. The personalized scanpath prediction model is then conditioned on these subject embeddings to produce accurate, personalized results. Experiments on multiple eye-tracking datasets demonstrate that our method excels in FS-PSP settings and does not require any fine-tuning steps at test time. Code is available at: https://github.com/cvlab-stonybrook/few-shot-scanpath

cs.CV↗

arXiv2025

GECKO: Gigapixel Vision-Concept Contrastive Pretraining in Histopathology

Pretraining a Multiple Instance Learning (MIL) aggregator enables the derivation of Whole Slide Image (WSI)-level embeddings from patch-level representations without supervision. While recent multimodal MIL pretraining approaches leveraging auxiliary modalities have demonstrated performance gains over unimodal WSI pretraining, the acquisition of these additional modalities necessitates extensive clinical profiling. This requirement increases costs and limits scalability in existing WSI datasets lacking such paired modalities. To address this, we propose Gigapixel Vision-Concept Knowledge Contrastive pretraining (GECKO), which aligns WSIs with a Concept Prior derived from the available WSIs. First, we derive an inherently interpretable concept prior by computing the similarity between each WSI patch and textual descriptions of predefined pathology concepts. GECKO then employs a dual-branch MIL network: one branch aggregates patch embeddings into a WSI-level deep embedding, while the other aggregates the concept prior into a corresponding WSI-level concept embedding. Both aggregated embeddings are aligned using a contrastive objective, thereby pretraining the entire dual-branch MIL model. Moreover, when auxiliary modalities such as transcriptomics data are available, GECKO seamlessly integrates them. Across five diverse tasks, GECKO consistently outperforms prior unimodal and multimodal pretraining approaches while also delivering clinically meaningful interpretability that bridges the gap between computational models and pathology expertise. Code is made available at https://github.com/bmi-imaginelab/GECKO

cs.CV↗

arXiv2025

TopoCellGen: Generating Histopathology Cell Topology with a Diffusion Model

Accurately modeling multi-class cell topology is crucial in digital pathology, as it provides critical insights into tissue structure and pathology. The synthetic generation of cell topology enables realistic simulations of complex tissue environments, enhances downstream tasks by augmenting training data, aligns more closely with pathologists' domain knowledge, and offers new opportunities for controlling and generalizing the tumor microenvironment. In this paper, we propose a novel approach that integrates topological constraints into a diffusion model to improve the generation of realistic, contextually accurate cell topologies. Our method refines the simulation of cell distributions and interactions, increasing the precision and interpretability of results in downstream tasks such as cell detection and classification. To assess the topological fidelity of generated layouts, we introduce a new metric, Topological Frechet Distance (TopoFD), which overcomes the limitations of traditional metrics like FID in evaluating topological structure. Experimental results demonstrate the effectiveness of our approach in generating multi-class cell layouts that capture intricate topological relationships. Code is available at https://github.com/Melon-Xu/TopoCellGen.

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arXiv2025

ZoomLDM: Latent Diffusion Model for multi-scale image generation

Diffusion models have revolutionized image generation, yet several challenges restrict their application to large-image domains, such as digital pathology and satellite imagery. Given that it is infeasible to directly train a model on 'whole' images from domains with potential gigapixel sizes, diffusion-based generative methods have focused on synthesizing small, fixed-size patches extracted from these images. However, generating small patches has limited applicability since patch-based models fail to capture the global structures and wider context of large images, which can be crucial for synthesizing (semantically) accurate samples. To overcome this limitation, we present ZoomLDM, a diffusion model tailored for generating images across multiple scales. Central to our approach is a novel magnification-aware conditioning mechanism that utilizes self-supervised learning (SSL) embeddings and allows the diffusion model to synthesize images at different 'zoom' levels, i.e., fixed-size patches extracted from large images at varying scales. ZoomLDM synthesizes coherent histopathology images that remain contextually accurate and detailed at different zoom levels, achieving state-of-the-art image generation quality across all scales and excelling in the data-scarce setting of generating thumbnails of entire large images. The multi-scale nature of ZoomLDM unlocks additional capabilities in large image generation, enabling computationally tractable and globally coherent image synthesis up to $4096 \times 4096$ pixels and $4\times$ super-resolution. Additionally, multi-scale features extracted from ZoomLDM are highly effective in multiple instance learning experiments.

cs.CV↗

arXiv2025

TopoDiffusionNet: A Topology-aware Diffusion Model

Diffusion models excel at creating visually impressive images but often struggle to generate images with a specified topology. The Betti number, which represents the number of structures in an image, is a fundamental measure in topology. Yet, diffusion models fail to satisfy even this basic constraint. This limitation restricts their utility in applications requiring exact control, like robotics and environmental modeling. To address this, we propose TopoDiffusionNet (TDN), a novel approach that enforces diffusion models to maintain the desired topology. We leverage tools from topological data analysis, particularly persistent homology, to extract the topological structures within an image. We then design a topology-based objective function to guide the denoising process, preserving intended structures while suppressing noisy ones. Our experiments across four datasets demonstrate significant improvements in topological accuracy. TDN is the first to integrate topology with diffusion models, opening new avenues of research in this area. Code available at https://github.com/Saumya-Gupta-26/TopoDiffusionNet

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