arXiv subjects

Eric Xing

Publications and source records attributed to Eric Xing.

At least 109 records · Page 6Linked to original sources

arXiv2022

Learning from Mistakes -- A Framework for Neural Architecture Search

Learning from one's mistakes is an effective human learning technique where the learners focus more on the topics where mistakes were made, so as to deepen their understanding. In this paper, we investigate if this human learning strategy can be applied in machine learning. We propose a novel machine learning method called Learning From Mistakes (LFM), wherein the learner improves its ability to learn by focusing more on the mistakes during revision. We formulate LFM as a three-stage optimization problem: 1) learner learns; 2) learner re-learns focusing on the mistakes, and; 3) learner validates its learning. We develop an efficient algorithm to solve the LFM problem. We apply the LFM framework to neural architecture search on CIFAR-10, CIFAR-100, and Imagenet. Experimental results strongly demonstrate the effectiveness of our model.

cs.LG↗

arXiv2021

A Fast Knowledge Distillation Framework for Visual Recognition

While Knowledge Distillation (KD) has been recognized as a useful tool in many visual tasks, such as supervised classification and self-supervised representation learning, the main drawback of a vanilla KD framework is its mechanism, which consumes the majority of the computational overhead on forwarding through the giant teacher networks, making the entire learning procedure inefficient and costly. ReLabel, a recently proposed solution, suggests creating a label map for the entire image. During training, it receives the cropped region-level label by RoI aligning on a pre-generated entire label map, allowing for efficient supervision generation without having to pass through the teachers many times. However, as the KD teachers are from conventional multi-crop training, there are various mismatches between the global label-map and region-level label in this technique, resulting in performance deterioration. In this study, we present a Fast Knowledge Distillation (FKD) framework that replicates the distillation training phase and generates soft labels using the multi-crop KD approach, while training faster than ReLabel since no post-processes such as RoI align and softmax operations are used. When conducting multi-crop in the same image for data loading, our FKD is even more efficient than the traditional image classification framework. On ImageNet-1K, we obtain 79.8% with ResNet-50, outperforming ReLabel by ~1.0% while being faster. On the self-supervised learning task, we also show that FKD has an efficiency advantage. Our project page: http://zhiqiangshen.com/projects/FKD/index.html, source code and models are available at: https://github.com/szq0214/FKD.

cs.CV↗

arXiv2021

Tradeoffs of Linear Mixed Models in Genome-wide Association Studies

Motivated by empirical arguments that are well-known from the genome-wide association studies (GWAS) literature, we study the statistical properties of linear mixed models (LMMs) applied to GWAS. First, we study the sensitivity of LMMs to the inclusion of a candidate SNP in the kinship matrix, which is often done in practice to speed up computations. Our results shed light on the size of the error incurred by including a candidate SNP, providing a justification to this technique in order to trade-off velocity against veracity. Second, we investigate how mixed models can correct confounders in GWAS, which is widely accepted as an advantage of LMMs over traditional methods. We consider two sources of confounding factors, population stratification and environmental confounding factors, and study how different methods that are commonly used in practice trade-off these two confounding factors differently.

q-bio.QM↗

arXiv2021

Multi-task Learning of Order-Consistent Causal Graphs

We consider the problem of discovering $K$ related Gaussian directed acyclic graphs (DAGs), where the involved graph structures share a consistent causal order and sparse unions of supports. Under the multi-task learning setting, we propose a $l_1/l_2$-regularized maximum likelihood estimator (MLE) for learning $K$ linear structural equation models. We theoretically show that the joint estimator, by leveraging data across related tasks, can achieve a better sample complexity for recovering the causal order (or topological order) than separate estimations. Moreover, the joint estimator is able to recover non-identifiable DAGs, by estimating them together with some identifiable DAGs. Lastly, our analysis also shows the consistency of union support recovery of the structures. To allow practical implementation, we design a continuous optimization problem whose optimizer is the same as the joint estimator and can be approximated efficiently by an iterative algorithm. We validate the theoretical analysis and the effectiveness of the joint estimator in experiments.

cs.LG↗

arXiv2021

Federated Learning via Posterior Averaging: A New Perspective and Practical Algorithms

Federated learning is typically approached as an optimization problem, where the goal is to minimize a global loss function by distributing computation across client devices that possess local data and specify different parts of the global objective. We present an alternative perspective and formulate federated learning as a posterior inference problem, where the goal is to infer a global posterior distribution by having client devices each infer the posterior of their local data. While exact inference is often intractable, this perspective provides a principled way to search for global optima in federated settings. Further, starting with the analysis of federated quadratic objectives, we develop a computation- and communication-efficient approximate posterior inference algorithm -- federated posterior averaging (FedPA). Our algorithm uses MCMC for approximate inference of local posteriors on the clients and efficiently communicates their statistics to the server, where the latter uses them to refine a global estimate of the posterior mode. Finally, we show that FedPA generalizes federated averaging (FedAvg), can similarly benefit from adaptive optimizers, and yields state-of-the-art results on four realistic and challenging benchmarks, converging faster, to better optima.

cs.LG↗

arXiv2021

On Data Efficiency of Meta-learning

Meta-learning has enabled learning statistical models that can be quickly adapted to new prediction tasks. Motivated by use-cases in personalized federated learning, we study the often overlooked aspect of the modern meta-learning algorithms -- their data efficiency. To shed more light on which methods are more efficient, we use techniques from algorithmic stability to derive bounds on the transfer risk that have important practical implications, indicating how much supervision is needed and how it must be allocated for each method to attain the desired level of generalization. Further, we introduce a new simple framework for evaluating meta-learning methods under a limit on the available supervision, conduct an empirical study of MAML, Reptile, and Protonets, and demonstrate the differences in the behavior of these methods on few-shot and federated learning benchmarks. Finally, we propose active meta-learning, which incorporates active data selection into learning-to-learn, leading to better performance of all methods in the limited supervision regime.

cs.LG↗

arXiv2021

Interactive Weak Supervision: Learning Useful Heuristics for Data Labeling

Obtaining large annotated datasets is critical for training successful machine learning models and it is often a bottleneck in practice. Weak supervision offers a promising alternative for producing labeled datasets without ground truth annotations by generating probabilistic labels using multiple noisy heuristics. This process can scale to large datasets and has demonstrated state of the art performance in diverse domains such as healthcare and e-commerce. One practical issue with learning from user-generated heuristics is that their creation requires creativity, foresight, and domain expertise from those who hand-craft them, a process which can be tedious and subjective. We develop the first framework for interactive weak supervision in which a method proposes heuristics and learns from user feedback given on each proposed heuristic. Our experiments demonstrate that only a small number of feedback iterations are needed to train models that achieve highly competitive test set performance without access to ground truth training labels. We conduct user studies, which show that users are able to effectively provide feedback on heuristics and that test set results track the performance of simulated oracles.

cs.LG↗

arXiv2020

Regularizing Black-box Models for Improved Interpretability

Most of the work on interpretable machine learning has focused on designing either inherently interpretable models, which typically trade-off accuracy for interpretability, or post-hoc explanation systems, whose explanation quality can be unpredictable. Our method, ExpO, is a hybridization of these approaches that regularizes a model for explanation quality at training time. Importantly, these regularizers are differentiable, model agnostic, and require no domain knowledge to define. We demonstrate that post-hoc explanations for ExpO-regularized models have better explanation quality, as measured by the common fidelity and stability metrics. We verify that improving these metrics leads to significantly more useful explanations with a user study on a realistic task.

cs.LG↗

arXiv2020

Data-to-Text Generation with Style Imitation

Recent neural approaches to data-to-text generation have mostly focused on improving content fidelity while lacking explicit control over writing styles (e.g., word choices, sentence structures). More traditional systems use templates to determine the realization of text. Yet manual or automatic construction of high-quality templates is difficult, and a template acting as hard constraints could harm content fidelity when it does not match the record perfectly. We study a new way of stylistic control by using existing sentences as soft templates. That is, the model learns to imitate the writing style of any given exemplar sentence, with automatic adaptions to faithfully describe the content record. The problem is challenging due to the lack of parallel data. We develop a neural approach that includes a hybrid attention-copy mechanism, learns with weak supervisions, and is enhanced with a new content coverage constraint. We conduct experiments in restaurants and sports domains. Results show our approach achieves stronger performance than a range of comparison methods. Our approach balances well between content fidelity and style control given exemplars that match the records to varying degrees.

cs.CL↗

arXiv2020

Pathological Visual Question Answering

Is it possible to develop an "AI Pathologist" to pass the board-certified examination of the American Board of Pathology (ABP)? To build such a system, three challenges need to be addressed. First, we need to create a visual question answering (VQA) dataset where the AI agent is presented with a pathology image together with a question and is asked to give the correct answer. Due to privacy concerns, pathology images are usually not publicly available. Besides, only well-trained pathologists can understand pathology images, but they barely have time to help create datasets for AI research. The second challenge is: since it is difficult to hire highly experienced pathologists to create pathology visual questions and answers, the resulting pathology VQA dataset may contain errors. Training pathology VQA models using these noisy or even erroneous data will lead to problematic models that cannot generalize well on unseen images. The third challenge is: the medical concepts and knowledge covered in pathology question-answer (QA) pairs are very diverse while the number of QA pairs available for modeling training is limited. How to learn effective representations of diverse medical concepts based on limited data is technically demanding. In this paper, we aim to address these three challenges. To our best knowledge, our work represents the first one addressing the pathology VQA problem. To deal with the issue that a publicly available pathology VQA dataset is lacking, we create PathVQA dataset. To address the second challenge, we propose a learning-by-ignoring approach. To address the third challenge, we propose to use cross-modal self-supervised learning. We perform experiments on our created PathVQA dataset and the results demonstrate the effectiveness of our proposed learning-by-ignoring method and cross-modal self-supervised learning methods.

cs.CV↗

arXiv2020

Harnessing Deep Neural Networks with Logic Rules

Combining deep neural networks with structured logic rules is desirable to harness flexibility and reduce uninterpretability of the neural models. We propose a general framework capable of enhancing various types of neural networks (e.g., CNNs and RNNs) with declarative first-order logic rules. Specifically, we develop an iterative distillation method that transfers the structured information of logic rules into the weights of neural networks. We deploy the framework on a CNN for sentiment analysis, and an RNN for named entity recognition. With a few highly intuitive rules, we obtain substantial improvements and achieve state-of-the-art or comparable results to previous best-performing systems.

cs.LG↗

arXiv2020

Show, Describe and Conclude: On Exploiting the Structure Information of Chest X-Ray Reports

Chest X-Ray (CXR) images are commonly used for clinical screening and diagnosis. Automatically writing reports for these images can considerably lighten the workload of radiologists for summarizing descriptive findings and conclusive impressions. The complex structures between and within sections of the reports pose a great challenge to the automatic report generation. Specifically, the section Impression is a diagnostic summarization over the section Findings; and the appearance of normality dominates each section over that of abnormality. Existing studies rarely explore and consider this fundamental structure information. In this work, we propose a novel framework that exploits the structure information between and within report sections for generating CXR imaging reports. First, we propose a two-stage strategy that explicitly models the relationship between Findings and Impression. Second, we design a novel cooperative multi-agent system that implicitly captures the imbalanced distribution between abnormality and normality. Experiments on two CXR report datasets show that our method achieves state-of-the-art performance in terms of various evaluation metrics. Our results expose that the proposed approach is able to generate high-quality medical reports through integrating the structure information.

cs.CL↗

arXiv2020

On the Generation of Medical Dialogues for COVID-19

Under the pandemic of COVID-19, people experiencing COVID19-related symptoms or exposed to risk factors have a pressing need to consult doctors. Due to hospital closure, a lot of consulting services have been moved online. Because of the shortage of medical professionals, many people cannot receive online consultations timely. To address this problem, we aim to develop a medical dialogue system that can provide COVID19-related consultations. We collected two dialogue datasets -- CovidDialog -- (in English and Chinese respectively) containing conversations between doctors and patients about COVID-19. On these two datasets, we train several dialogue generation models based on Transformer, GPT, and BERT-GPT. Since the two COVID-19 dialogue datasets are small in size, which bear high risk of overfitting, we leverage transfer learning to mitigate data deficiency. Specifically, we take the pretrained models of Transformer, GPT, and BERT-GPT on dialog datasets and other large-scale texts, then finetune them on our CovidDialog tasks. We perform both automatic and human evaluation of responses generated by these models. The results show that the generated responses are promising in being doctor-like, relevant to the conversation history, and clinically informative. The data and code are available at https://github.com/UCSD-AI4H/COVID-Dialogue.

cs.CL↗

arXiv2020

XRayGAN: Consistency-preserving Generation of X-ray Images from Radiology Reports

To effectively train medical students to become qualified radiologists, a large number of X-ray images collected from patients with diverse medical conditions are needed. However, due to data privacy concerns, such images are typically difficult to obtain. To address this problem, we develop methods to generate view-consistent, high-fidelity, and high-resolution X-ray images from radiology reports to facilitate radiology training of medical students. This task is presented with several challenges. First, from a single report, images with different views (e.g., frontal, lateral) need to be generated. How to ensure consistency of these images (i.e., make sure they are about the same patient)? Second, X-ray images are required to have high resolution. Otherwise, many details of diseases would be lost. How to generate high-resolutions images? Third, radiology reports are long and have complicated structure. How to effectively understand their semantics to generate high-fidelity images that accurately reflect the contents of the reports? To address these three challenges, we propose an XRayGAN composed of three modules: (1) a view consistency network that maximizes the consistency between generated frontal-view and lateral-view images; (2) a multi-scale conditional GAN that progressively generates a cascade of images with increasing resolution; (3) a hierarchical attentional encoder that learns the latent semantics of a radiology report by capturing its hierarchical linguistic structure and various levels of clinical importance of words and sentences. Experiments on two radiology datasets demonstrate the effectiveness of our methods. To our best knowledge, this work represents the first one generating consistent and high-resolution X-ray images from radiology reports. The code is available at https://github.com/UCSD-AI4H/XRayGAN.

eess.IV↗

arXiv2020

Learning from Imperfect Annotations

Many machine learning systems today are trained on large amounts of human-annotated data. Data annotation tasks that require a high level of competency make data acquisition expensive, while the resulting labels are often subjective, inconsistent, and may contain a variety of human biases. To improve the data quality, practitioners often need to collect multiple annotations per example and aggregate them before training models. Such a multi-stage approach results in redundant annotations and may often produce imperfect "ground truth" that may limit the potential of training accurate machine learning models. We propose a new end-to-end framework that enables us to: (i) merge the aggregation step with model training, thus allowing deep learning systems to learn to predict ground truth estimates directly from the available data, and (ii) model difficulties of examples and learn representations of the annotators that allow us to estimate and take into account their competencies. Our approach is general and has many applications, including training more accurate models on crowdsourced data, ensemble learning, as well as classifier accuracy estimation from unlabeled data. We conduct an extensive experimental evaluation of our method on 5 crowdsourcing datasets of varied difficulty and show accuracy gains of up to 25% over the current state-of-the-art approaches for aggregating annotations, as well as significant reductions in the required annotation redundancy.

cs.LG↗

arXiv2020

PathVQA: 30000+ Questions for Medical Visual Question Answering

Is it possible to develop an "AI Pathologist" to pass the board-certified examination of the American Board of Pathology? To achieve this goal, the first step is to create a visual question answering (VQA) dataset where the AI agent is presented with a pathology image together with a question and is asked to give the correct answer. Our work makes the first attempt to build such a dataset. Different from creating general-domain VQA datasets where the images are widely accessible and there are many crowdsourcing workers available and capable of generating question-answer pairs, developing a medical VQA dataset is much more challenging. First, due to privacy concerns, pathology images are usually not publicly available. Second, only well-trained pathologists can understand pathology images, but they barely have time to help create datasets for AI research. To address these challenges, we resort to pathology textbooks and online digital libraries. We develop a semi-automated pipeline to extract pathology images and captions from textbooks and generate question-answer pairs from captions using natural language processing. We collect 32,799 open-ended questions from 4,998 pathology images where each question is manually checked to ensure correctness. To our best knowledge, this is the first dataset for pathology VQA. Our dataset will be released publicly to promote research in medical VQA.

cs.CL↗

arXiv2020

Efficient Exploration via State Marginal Matching

Exploration is critical to a reinforcement learning agent's performance in its given environment. Prior exploration methods are often based on using heuristic auxiliary predictions to guide policy behavior, lacking a mathematically-grounded objective with clear properties. In contrast, we recast exploration as a problem of State Marginal Matching (SMM), where we aim to learn a policy for which the state marginal distribution matches a given target state distribution. The target distribution is a uniform distribution in most cases, but can incorporate prior knowledge if available. In effect, SMM amortizes the cost of learning to explore in a given environment. The SMM objective can be viewed as a two-player, zero-sum game between a state density model and a parametric policy, an idea that we use to build an algorithm for optimizing the SMM objective. Using this formalism, we further demonstrate that prior work approximately maximizes the SMM objective, offering an explanation for the success of these methods. On both simulated and real-world tasks, we demonstrate that agents that directly optimize the SMM objective explore faster and adapt more quickly to new tasks as compared to prior exploration methods.

cs.LG↗

arXiv2020

Methods for comparing uncertainty quantifications for material property predictions

Data science and informatics tools have been proliferating recently within the computational materials science and catalysis fields. This proliferation has spurned the creation of various frameworks for automated materials screening, discovery, and design. Underpinning these frameworks are surrogate models with uncertainty estimates on their predictions. These uncertainty estimates are instrumental for determining which materials to screen next, but the computational catalysis field does not yet have a standard procedure for judging the quality of such uncertainty estimates. Here we present a suite of figures and performance metrics derived from the machine learning community that can be used to judge the quality of such uncertainty estimates. This suite probes the accuracy, calibration, and sharpness of a model quantitatively. We then show a case study where we judge various methods for predicting density-functional-theory-calculated adsorption energies. Of the methods studied here, we find that the best performer is a model where a convolutional neural network is used to supply features to a Gaussian process regressor, which then makes predictions of adsorption energies along with corresponding uncertainty estimates.

cond-mat.mtrl-sci↗