arXiv subjects

Tianming Liu

Publications and source records attributed to Tianming Liu.

At least 73 records · Page 4Linked to original sources

arXiv2025

AdCare-VLM: Towards a Unified and Pre-aligned Latent Representation for Healthcare Video Understanding

Chronic diseases, including diabetes, hypertension, asthma, HIV-AIDS, epilepsy, and tuberculosis, necessitate rigorous adherence to medication to avert disease progression, manage symptoms, and decrease mortality rates. Adherence is frequently undermined by factors including patient behavior, caregiver support, elevated medical costs, and insufficient healthcare infrastructure. We propose AdCare-VLM, a specialized LLaVA-based multimodal large vision language model (LVLM) by introducing a unified visual latent space with pre-alignment to facilitate visual question answering (VQA) concerning medication adherence through patient videos. We employ a private dataset comprising 806 custom-annotated tuberculosis (TB) medication monitoring videos, which have been labeled by clinical experts, to fine-tune the model for adherence pattern detection. We present LLM-TB-VQA, a detailed medical adherence VQA dataset that encompasses positive, negative, and ambiguous adherence cases. Our method identifies correlations between visual features, such as the clear visibility of the patient's face, medication, water intake, and the act of ingestion, and their associated medical concepts in captions. This facilitates the integration of aligned visual-linguistic representations and improves multimodal interactions. Experimental results indicate that our method surpasses parameter-efficient fine-tuning (PEFT) enabled VLM models, such as LLaVA-V1.5 and Chat-UniVi, with absolute improvements ranging from 3.1% to 3.54% across pre-trained, regular, and low-rank adaptation (LoRA) configurations. Comprehensive ablation studies and attention map visualizations substantiate our approach, enhancing interpretability.

cs.CV↗

arXiv2025

Build AI Assistants using Large Language Models and Agents to Enhance the Engineering Education of Biomechanics

While large language models (LLMs) have demonstrated remarkable versatility across a wide range of general tasks, their effectiveness often diminishes in domain-specific applications due to inherent knowledge gaps. Moreover, their performance typically declines when addressing complex problems that require multi-step reasoning and analysis. In response to these challenges, we propose leveraging both LLMs and AI agents to develop education assistants aimed at enhancing undergraduate learning in biomechanics courses that focus on analyzing the force and moment in the musculoskeletal system of the human body. To achieve our goal, we construct a dual-module framework to enhance LLM performance in biomechanics educational tasks: 1) we apply Retrieval-Augmented Generation (RAG) to improve the specificity and logical consistency of LLM's responses to the conceptual true/false questions; 2) we build a Multi-Agent System (MAS) to solve calculation-oriented problems involving multi-step reasoning and code execution. Specifically, we evaluate the performance of several LLMs, i.e., Qwen-1.0-32B, Qwen-2.5-32B, and Llama-70B, on a biomechanics dataset comprising 100 true/false conceptual questions and problems requiring equation derivation and calculation. Our results demonstrate that RAG significantly enhances the performance and stability of LLMs in answering conceptual questions, surpassing those of vanilla models. On the other hand, the MAS constructed using multiple LLMs demonstrates its ability to perform multi-step reasoning, derive equations, execute code, and generate explainable solutions for tasks that require calculation. These findings demonstrate the potential of applying RAG and MAS to enhance LLM performance for specialized courses in engineering curricula, providing a promising direction for developing intelligent tutoring in engineering education.

cs.AI↗

arXiv2025

DCMM-Transformer: Degree-Corrected Mixed-Membership Attention for Medical Imaging

Medical images exhibit latent anatomical groupings, such as organs, tissues, and pathological regions, that standard Vision Transformers (ViTs) fail to exploit. While recent work like SBM-Transformer attempts to incorporate such structures through stochastic binary masking, they suffer from non-differentiability, training instability, and the inability to model complex community structure. We present DCMM-Transformer, a novel ViT architecture for medical image analysis that incorporates a Degree-Corrected Mixed-Membership (DCMM) model as an additive bias in self-attention. Unlike prior approaches that rely on multiplicative masking and binary sampling, our method introduces community structure and degree heterogeneity in a fully differentiable and interpretable manner. Comprehensive experiments across diverse medical imaging datasets, including brain, chest, breast, and ocular modalities, demonstrate the superior performance and generalizability of the proposed approach. Furthermore, the learned group structure and structured attention modulation substantially enhance interpretability by yielding attention maps that are anatomically meaningful and semantically coherent.

cs.CV↗

arXiv2025

Aligning LLM agents with human learning and adjustment behavior: a dual agent approach

Effective modeling of how human travelers learn and adjust their travel behavior from interacting with transportation systems is critical for system assessment and planning. However, this task is also difficult due to the complex cognition and decision-making involved in such behavior. Recent research has begun to leverage Large Language Model (LLM) agents for this task. Building on this, we introduce a novel dual-agent framework that enables continuous learning and alignment between LLM agents and human travelers on learning and adaptation behavior from online data streams. Our approach involves a set of LLM traveler agents, equipped with a memory system and a learnable persona, which serve as simulators for human travelers. To ensure behavioral alignment, we introduce an LLM calibration agent that leverages the reasoning and analytical capabilities of LLMs to train the personas of these traveler agents. Working together, this dual-agent system is designed to track and align the underlying decision-making mechanisms of travelers and produce realistic, adaptive simulations. Using a real-world dataset from a day-to-day route choice experiment, we show our approach significantly outperforms existing LLM-based methods in both individual behavioral alignment and aggregate simulation accuracy. Furthermore, we demonstrate that our method moves beyond simple behavioral mimicry to capture the evolution of underlying learning processes, a deeper alignment that fosters robust generalization. Overall, our framework provides a new approach for creating adaptive and behaviorally realistic agents to simulate travelers' learning and adaptation that can benefit transportation simulation and policy analysis.

cs.AI↗

arXiv2025

AI in Proton Therapy Treatment Planning: A Review

Purpose: Proton therapy provides superior dose conformity compared to photon therapy, but its treatment planning is challenged by sensitivity to anatomical changes, setup/range uncertainties, and computational complexity. This review evaluates the role of artificial intelligence (AI) in improving proton therapy treatment planning. Materials and methods: Recent studies on AI applications in image reconstruction, image registration, dose calculation, plan optimization, and quality assessment were reviewed and summarized by application domain and validation strategy. Results: AI has shown promise in automating contouring, enhancing imaging for dose calculation, predicting dose distributions, and accelerating robust optimization. These methods reduce manual workload, improve efficiency, and support more personalized planning and adaptive planning. Limitations include data scarcity, model generalizability, and clinical integration. Conclusion: AI is emerging as a key enabler of efficient, consistent, and patient-specific proton therapy treatment planning. Addressing challenges in validation and implementation will be essential for its translation into routine clinical practice.

physics.med-ph↗

arXiv2025

BrainMCLIP: Brain Image Decoding with Multi-Layer feature Fusion of CLIP

Decoding images from fMRI often involves mapping brain activity to CLIP's final semantic layer. To capture finer visual details, many approaches add a parameter-intensive VAE-based pipeline. However, these approaches overlook rich object information within CLIP's intermediate layers and contradicts the brain's functionally hierarchical. We introduce BrainMCLIP, which pioneers a parameter-efficient, multi-layer fusion approach guided by human visual system's functional hierarchy, eliminating the need for such a separate VAE pathway. BrainMCLIP aligns fMRI signals from functionally distinct visual areas (low-/high-level) to corresponding intermediate and final CLIP layers, respecting functional hierarchy. We further introduce a Cross-Reconstruction strategy and a novel multi-granularity loss. Results show BrainMCLIP achieves highly competitive performance, particularly excelling on high-level semantic metrics where it matches or surpasses SOTA(state-of-the-art) methods, including those using VAE pipelines. Crucially, it achieves this with substantially fewer parameters, demonstrating a reduction of 71.7\%(Table.\ref{tab:compare_clip_vae}) compared to top VAE-based SOTA methods, by avoiding the VAE pathway. By leveraging intermediate CLIP features, it effectively captures visual details often missed by CLIP-only approaches, striking a compelling balance between semantic accuracy and detail fidelity without requiring a separate VAE pipeline.

cs.CV↗

arXiv2025

Large language models management of medications: three performance analyses

Purpose: Large language models (LLMs) have proven performance for certain diagnostic tasks, however limited studies have evaluated their consistency in recommending appropriate medication regimens for a given diagnosis. Medication management is a complex task that requires synthesis of drug formulation and complete order instructions for safe use. Here, the performance of GPT 4o, an LLM available with ChatGPT, was tested for three medication management tasks. Methods: GPT-4o performance was tested using three medication tasks: identifying available formulations for a given generic drug name, identifying drug-drug interactions (DDI) for a given medication regimen, and preparing a medication order for a given generic drug name. For each experiment, the models raw text response was captured exactly as returned and evaluated using clinician evaluation in addition to standard LLM metrics, including Term Frequency-Inverse Document Frequency (TF IDF) vectors, normalized Levenshtein similarity, and Recall-Oriented Understudy for Gisting Evaluation (ROUGE 1/ROUGE L F1) between each response and its reference string. Results: For the first task of drug-formulation matching, GPT-4o had 49% accuracy for generic medications being matched to all available formulations, with an average of 1.23 omissions per medication and 1.14 hallucinations per medication. For the second task of drug-drug interaction identification, the accuracy was 54.7% for identifying the DDI pair. For the third task, GPT-4o generated order sentences containing no medication or abbreviation errors in 65.8% of cases. Conclusions: Model performance for basic medication tasks was consistently poor. This evaluation highlights the need for domain-specific training through clinician-annotated datasets and a comprehensive evaluation framework for benchmarking performance.

cs.CL↗

arXiv2025

CLAQS: Compact Learnable All-Quantum Token Mixer with Shared-ansatz for Text Classification

Quantum compute is scaling fast, from cloud QPUs to high throughput GPU simulators, making it timely to prototype quantum NLP beyond toy tasks. However, devices remain qubit limited and depth limited, training can be unstable, and classical attention is compute and memory heavy. This motivates compact, phase aware quantum token mixers that stabilize amplitudes and scale to long sequences. We present CLAQS, a compact, fully quantum token mixer for text classification that jointly learns complex-valued mixing and nonlinear transformations within a unified quantum circuit. To enable stable end-to-end optimization, we apply l1 normalization to regulate amplitude scaling and introduce a two-stage parameterized quantum architecture that decouples shared token embeddings from a window-level quantum feed-forward module. Operating under a sliding-window regime with document-level aggregation, CLAQS requires only eight data qubits and shallow circuits, yet achieves 91.64% accuracy on SST-2 and 87.08% on IMDB, outperforming both classical Transformer baselines and strong hybrid quantum-classical counterparts.

quant-ph↗

arXiv2025

Managing ride-sourcing drivers at transportation terminals: a lottery-based queueing approach

Problem definition: Transportation terminals such as airports often experience persistent oversupply of idle ride-sourcing drivers, resulting in long driver waiting times and inducing externalities such as curbside congestion. While platforms now employ virtual queues with control levers like dynamic pricing, information provision, and direct admission control to manage this issue, all existing levers involve significant trade-offs and side effects. This limitation highlights the need for an alternative management approach. Methodology/results: We develop a queueing-theoretic framework to model ride-sourcing operations at terminals and propose a novel lottery-based control mechanism for the virtual queue. This non-monetary strategy works by probabilistically assigning a driver's entry position. By directly influencing their expected waiting time, the mechanism in turn shapes their decision to join the queue. We reformulate the resulting infinite-dimensional, non-smooth optimization into a tractable bi-level program by leveraging the threshold structure of the equilibrium. Theoretically, we prove that the lottery mechanism can achieve higher or equal social welfare than FIFO-queue-based dynamic pricing. Numerical experiments in unconstrained markets show that in profit maximization, our approach only narrowly trails dynamic pricing and significantly outperforms static pricing. Furthermore, it is shown that under commission fee caps, the lottery mechanism can surpass dynamic pricing in profitability. Implications: This study introduces a new, non-monetary lever for managing idle ride-sourcing drivers at transportation terminals. By aligning operational practices with queue-based dynamics, the proposed lottery mechanism offers a robust and implementable alternative to pricing-based approaches, with advantages in both unconstrained and regulated markets.

math.OC↗

arXiv2025

Causal Machine Learning Analysis of Empirical Relative Biological Effectiveness (RBE) for Mandible Osteoradionecrosis in Head and Neck Cancer Radiotherapy

Mandible Osteoradionecrosis (ORN) is one of the most severe adverse events (AEs) for head and neck (H&N) cancer radiotherapy. Previous retrospective investigations on real-world data relied on conventional statistical models that primarily elucidate correlation rather than establishing causal relationships. Through the novel causal machine learning, we aim to obtain empirical relative biological effectiveness (RBE) for ORN in H&N cancer patients treated with pencil-beam-scanning proton therapy (PBSPT). 335 patients treated by PBSPT and 931 patients treated by volumetric-modulated arc therapy (VMAT) were included. We use 1:1 case-matching to minimize the imbalance in clinical factors between PBSPT and VMAT. The bias test of standardized mean differences (SMD) was applied on the case-matched patient cohorts. The causal machine learning method, causal forest (CF), was adopted to investigate the causal effects between dosimetric factors and the incidence of ORN. The dose volume constraints (DVCs) for VMAT and PBSPT were derived based on causal effects. RBE values were further empirically derived based on tolerance curves formed from DVCs. 335 VMAT patients were case-matched to 335 PBSPT patients; however, SMD analysis revealed persistent covariate imbalances within each group, indicating residual confounding influence. Using CF modeling, we identified DVCs of mandible ORN and found that PBSPT had lower critical volumes than those of VMAT, leading to empirical RBE exceeding 1.1 in the moderate dose range (1.61 at 40 Gy[RBE=1.1], 1.30 at 50 Gy, and 1.13 at 60 Gy). This study presents a novel application of causal machine learning to evaluate mandible ORN in radiotherapy. The results indicate that proton RBE may significantly exceed 1.1 in the moderate dose range, underscoring the importance of incorporating the variable RBE into PBSPT treatment planning to mitigate the risk of ORN.

physics.med-ph↗

arXiv2025

NoisyNN: Exploring the Impact of Information Entropy Change in Learning Systems

We investigate the impact of entropy change in deep learning systems by noise injection at different levels, including the embedding space and the image. The series of models that employ our methodology are collectively known as Noisy Neural Networks (NoisyNN), with examples such as NoisyViT and NoisyCNN. Noise is conventionally viewed as a harmful perturbation in various deep learning architectures, such as convolutional neural networks (CNNs) and vision transformers (ViTs), as well as different learning tasks like image classification and transfer learning. However, this work shows noise can be an effective way to change the entropy of the learning system. We demonstrate that specific noise can boost the performance of various deep models under certain conditions. We theoretically prove the enhancement gained from positive noise by reducing the task complexity defined by information entropy and experimentally show the significant performance gain in large image datasets, such as the ImageNet. Herein, we use the information entropy to define the complexity of the task. We categorize the noise into two types, positive noise (PN) and harmful noise (HN), based on whether the noise can help reduce the task complexity. Extensive experiments of CNNs and ViTs have shown performance improvements by proactively injecting positive noise, where we achieved an unprecedented top 1 accuracy of 95$\%$ on ImageNet. Both theoretical analysis and empirical evidence have confirmed that the presence of positive noise, can benefit the learning process, while the traditionally perceived harmful noise indeed impairs deep learning models. The different roles of noise offer new explanations for deep models on specific tasks and provide a new paradigm for improving model performance. Moreover, it reminds us that we can influence the performance of learning systems via information entropy change.

cs.AI↗

arXiv2025

Quantum-Classical Hybrid Molecular Autoencoder for Advancing Classical Decoding

Although recent advances in quantum machine learning (QML) offer significant potential for enhancing generative models, particularly in molecular design, a large array of classical approaches still face challenges in achieving high fidelity and validity. In particular, the integration of QML with sequence-based tasks, such as Simplified Molecular Input Line Entry System (SMILES) string reconstruction, remains underexplored and usually suffers from fidelity degradation. In this work, we propose a hybrid quantum-classical architecture for SMILES reconstruction that integrates quantum encoding with classical sequence modeling to improve quantum fidelity and classical similarity. Our approach achieves a quantum fidelity of approximately 84% and a classical reconstruction similarity of 60%, surpassing existing quantum baselines. Our work lays a promising foundation for future QML applications, striking a balance between expressive quantum representations and classical sequence models and catalyzing broader research on quantum-aware sequence models for molecular and drug discovery.

cs.LG↗

arXiv2025

3D Plant Root Skeleton Detection and Extraction

Plant roots typically exhibit a highly complex and dense architecture, incorporating numerous slender lateral roots and branches, which significantly hinders the precise capture and modeling of the entire root system. Additionally, roots often lack sufficient texture and color information, making it difficult to identify and track root traits using visual methods. Previous research on roots has been largely confined to 2D studies; however, exploring the 3D architecture of roots is crucial in botany. Since roots grow in real 3D space, 3D phenotypic information is more critical for studying genetic traits and their impact on root development. We have introduced a 3D root skeleton extraction method that efficiently derives the 3D architecture of plant roots from a few images. This method includes the detection and matching of lateral roots, triangulation to extract the skeletal structure of lateral roots, and the integration of lateral and primary roots. We developed a highly complex root dataset and tested our method on it. The extracted 3D root skeletons showed considerable similarity to the ground truth, validating the effectiveness of the model. This method can play a significant role in automated breeding robots. Through precise 3D root structure analysis, breeding robots can better identify plant phenotypic traits, especially root structure and growth patterns, helping practitioners select seeds with superior root systems. This automated approach not only improves breeding efficiency but also reduces manual intervention, making the breeding process more intelligent and efficient, thus advancing modern agriculture.

cs.CV↗

arXiv2025

Bridging Classical and Quantum Computing for Next-Generation Language Models

Integrating Large Language Models (LLMs) with quantum computing is a critical challenge, hindered by the severe constraints of Noisy Intermediate-Scale Quantum (NISQ) devices, including barren plateaus and limited coherence. Current approaches often fail due to static quantum-classical partitioning. We introduce Adaptive Quantum-Classical Fusion (AQCF), the first framework to bridge this gap through dynamic, quantum-classical co-design. AQCF's core principle is real-time adaptation: it analyzes input complexity to orchestrate seamless transitions between classical and quantum processing. The framework features three key innovations: (1) entropy-driven adaptive circuits that circumvent barren plateaus; (2) quantum memory banks that unify classical attention with quantum state-based similarity retrieval; and (3) intelligent fusion controllers that allocate tasks for optimal performance. This architecture maintains full compatibility with classical Transformers while progressively incorporating quantum advantages. Experiments on sentiment analysis demonstrate that AQCF achieves competitive performance, significantly improves quantum resource efficiency, and operates successfully within typical NISQ constraints. By providing a seamless integration pathway, AQCF offers both immediate practical value on current quantum hardware and a clear evolution path toward mature Quantum LLMs.

quant-ph↗

arXiv2025

Bridging Brain Connectomes and Clinical Reports for Early Alzheimer's Disease Diagnosis

Integrating brain imaging data with clinical reports offers a valuable opportunity to leverage complementary multimodal information for more effective and timely diagnosis in practical clinical settings. This approach has gained significant attention in brain disorder research, yet a key challenge remains: how to effectively link objective imaging data with subjective text-based reports, such as doctors' notes. In this work, we propose a novel framework that aligns brain connectomes with clinical reports in a shared cross-modal latent space at both the subject and connectome levels, thereby enhancing representation learning. The key innovation of our approach is that we treat brain subnetworks as tokens of imaging data, rather than raw image patches, to align with word tokens in clinical reports. This enables a more efficient identification of system-level associations between neuroimaging findings and clinical observations, which is critical since brain disorders often manifest as network-level abnormalities rather than isolated regional alterations. We applied our method to mild cognitive impairment (MCI) using the ADNI dataset. Our approach not only achieves state-of-the-art predictive performance but also identifies clinically meaningful connectome-text pairs, offering new insights into the early mechanisms of Alzheimer's disease and supporting the development of clinically useful multimodal biomarkers.

cs.CV↗

arXiv2025

Beyond Adapter Retrieval: Latent Geometry-Preserving Composition via Sparse Task Projection

Recent advances in parameter-efficient transfer learning have demonstrated the utility of composing LoRA adapters from libraries of pretrained modules. However, most existing approaches rely on simple retrieval heuristics or uniform averaging, which overlook the latent structure of task relationships in representation space. We propose a new framework for adapter reuse that moves beyond retrieval, formulating adapter composition as a geometry-aware sparse reconstruction problem. Specifically, we represent each task by a latent prototype vector derived from the base model's encoder and aim to approximate the target task prototype as a sparse linear combination of retrieved reference prototypes, under an $\ell_1$-regularized optimization objective. The resulting combination weights are then used to blend the corresponding LoRA adapters, yielding a composite adapter tailored to the target task. This formulation not only preserves the local geometric structure of the task representation manifold, but also promotes interpretability and efficient reuse by selecting a minimal set of relevant adapters. We demonstrate the effectiveness of our approach across multiple domains-including medical image segmentation, medical report generation and image synthesis. Our results highlight the benefit of coupling retrieval with latent geometry-aware optimization for improved zero-shot generalization.

cs.LG↗

arXiv2025

Advances and Challenges in Foundation Agents: From Brain-Inspired Intelligence to Evolutionary, Collaborative, and Safe Systems

The advent of large language models (LLMs) has catalyzed a transformative shift in artificial intelligence, paving the way for advanced intelligent agents capable of sophisticated reasoning, robust perception, and versatile action across diverse domains. As these agents increasingly drive AI research and practical applications, their design, evaluation, and continuous improvement present intricate, multifaceted challenges. This book provides a comprehensive overview, framing intelligent agents within modular, brain-inspired architectures that integrate principles from cognitive science, neuroscience, and computational research. We structure our exploration into four interconnected parts. First, we systematically investigate the modular foundation of intelligent agents, systematically mapping their cognitive, perceptual, and operational modules onto analogous human brain functionalities and elucidating core components such as memory, world modeling, reward processing, goal, and emotion. Second, we discuss self-enhancement and adaptive evolution mechanisms, exploring how agents autonomously refine their capabilities, adapt to dynamic environments, and achieve continual learning through automated optimization paradigms. Third, we examine multi-agent systems, investigating the collective intelligence emerging from agent interactions, cooperation, and societal structures. Finally, we address the critical imperative of building safe and beneficial AI systems, emphasizing intrinsic and extrinsic security threats, ethical alignment, robustness, and practical mitigation strategies necessary for trustworthy real-world deployment. By synthesizing modular AI architectures with insights from different disciplines, this survey identifies key research challenges and opportunities, encouraging innovations that harmonize technological advancement with meaningful societal benefit.

cs.AI↗

arXiv2025

Adaptive Content Restriction for Large Language Models via Suffix Optimization

Large Language Models (LLMs) have demonstrated significant success across diverse applications. However, enforcing content restrictions remains a significant challenge due to their expansive output space. One aspect of content restriction is preventing LLMs from generating harmful content via model alignment approaches such as supervised fine-tuning (SFT). Yet, the need for content restriction may vary significantly across user groups, change rapidly over time, and not always align with general definitions of harmfulness. Applying SFT to each of these specific use cases is impractical due to the high computational, data, and storage demands. Motivated by this need, we propose a new task called \textit{Adaptive Content Restriction} (AdaCoRe), which focuses on lightweight strategies -- methods without model fine-tuning -- to prevent deployed LLMs from generating restricted terms for specific use cases. We propose the first method for AdaCoRe, named \textit{Suffix Optimization (SOP)}, which appends a short, optimized suffix to any prompt to a) prevent a target LLM from generating a set of restricted terms, while b) preserving the output quality. To evaluate AdaCoRe approaches, including our SOP, we create a new \textit{Content Restriction Benchmark} (CoReBench), which contains 400 prompts for 80 restricted terms across 8 carefully selected categories. We demonstrate the effectiveness of SOP on CoReBench, which outperforms the system-level baselines such as system suffix by 15\%, 17\%, 10\%, 9\%, and 6\% on average restriction rates for Gemma2-2B, Mistral-7B, Vicuna-7B, Llama3-8B, and Llama3.1-8B, respectively. We also demonstrate that SOP is effective on POE, an online platform hosting various commercial LLMs, highlighting its practicality in real-world scenarios.

cs.CL↗