arXiv subjects

Tianming Liu

Publications and source records attributed to Tianming Liu.

At least 91 records · Page 5Linked to original sources

arXiv2025

A Survey on Post-training of Large Language Models

The emergence of Large Language Models (LLMs) has fundamentally transformed natural language processing, making them indispensable across domains ranging from conversational systems to scientific exploration. However, their pre-trained architectures often reveal limitations in specialized contexts, including restricted reasoning capacities, ethical uncertainties, and suboptimal domain-specific performance. These challenges necessitate advanced post-training language models (PoLMs) to address these shortcomings, such as OpenAI-o1/o3 and DeepSeek-R1 (collectively known as Large Reasoning Models, or LRMs). This paper presents the first comprehensive survey of PoLMs, systematically tracing their evolution across five core paradigms: Fine-tuning, which enhances task-specific accuracy; Alignment, which ensures ethical coherence and alignment with human preferences; Reasoning, which advances multi-step inference despite challenges in reward design; Efficiency, which optimizes resource utilization amidst increasing complexity; Integration and Adaptation, which extend capabilities across diverse modalities while addressing coherence issues. Charting progress from ChatGPT's alignment strategies to DeepSeek-R1's innovative reasoning advancements, we illustrate how PoLMs leverage datasets to mitigate biases, deepen reasoning capabilities, and enhance domain adaptability. Our contributions include a pioneering synthesis of PoLM evolution, a structured taxonomy categorizing techniques and datasets, and a strategic agenda emphasizing the role of LRMs in improving reasoning proficiency and domain flexibility. As the first survey of its scope, this work consolidates recent PoLM advancements and establishes a rigorous intellectual framework for future research, fostering the development of LLMs that excel in precision, ethical robustness, and versatility across scientific and societal applications.

cs.CL↗

arXiv2025

Alignment and Safety in Large Language Models: Safety Mechanisms, Training Paradigms, and Emerging Challenges

Due to the remarkable capabilities and growing impact of large language models (LLMs), they have been deeply integrated into many aspects of society. Thus, ensuring their alignment with human values and intentions has emerged as a critical challenge. This survey provides a comprehensive overview of practical alignment techniques, training protocols, and empirical findings in LLM alignment. We analyze the development of alignment methods across diverse paradigms, characterizing the fundamental trade-offs between core alignment objectives. Our analysis shows that while supervised fine-tuning enables basic instruction-following, preference-based methods offer more flexibility for aligning with nuanced human intent. We discuss state-of-the-art techniques, including Direct Preference Optimization (DPO), Constitutional AI, brain-inspired methods, and alignment uncertainty quantification (AUQ), highlighting their approaches to balancing quality and efficiency. We review existing evaluation frameworks and benchmarking datasets, emphasizing limitations such as reward misspecification, distributional robustness, and scalable oversight. We summarize strategies adopted by leading AI labs to illustrate the current state of practice. We conclude by outlining open problems in oversight, value pluralism, robustness, and continuous alignment. This survey aims to inform both researchers and practitioners navigating the evolving landscape of LLM alignment.

cs.AI↗

arXiv2025

EndoGen: Conditional Autoregressive Endoscopic Video Generation

Endoscopic video generation is crucial for advancing medical imaging and enhancing diagnostic capabilities. However, prior efforts in this field have either focused on static images, lacking the dynamic context required for practical applications, or have relied on unconditional generation that fails to provide meaningful references for clinicians. Therefore, in this paper, we propose the first conditional endoscopic video generation framework, namely EndoGen. Specifically, we build an autoregressive model with a tailored Spatiotemporal Grid-Frame Patterning (SGP) strategy. It reformulates the learning of generating multiple frames as a grid-based image generation pattern, which effectively capitalizes the inherent global dependency modeling capabilities of autoregressive architectures. Furthermore, we propose a Semantic-Aware Token Masking (SAT) mechanism, which enhances the model's ability to produce rich and diverse content by selectively focusing on semantically meaningful regions during the generation process. Through extensive experiments, we demonstrate the effectiveness of our framework in generating high-quality, conditionally guided endoscopic content, and improves the performance of downstream task of polyp segmentation. Code released at https://www.github.com/CUHK-AIM-Group/EndoGen.

cs.CV↗

arXiv2025

A recent evaluation on the performance of LLMs on radiation oncology physics using questions of randomly shuffled options

Purpose: We present an updated study evaluating the performance of large language models (LLMs) in answering radiation oncology physics questions, focusing on the recently released models. Methods: A set of 100 multiple-choice radiation oncology physics questions, previously created by a well-experienced physicist, was used for this study. The answer options of the questions were randomly shuffled to create "new" exam sets. Five LLMs -- OpenAI o1-preview, GPT-4o, LLaMA 3.1 (405B), Gemini 1.5 Pro, and Claude 3.5 Sonnet -- with the versions released before September 30, 2024, were queried using these new exam sets. To evaluate their deductive reasoning ability, the correct answer options in the questions were replaced with "None of the above." Then, the explain-first and step-by-step instruction prompts were used to test if this strategy improved their reasoning ability. The performance of the LLMs was compared with the answers from medical physicists. Results: All models demonstrated expert-level performance on these questions, with o1-preview even surpassing medical physicists with a majority vote. When replacing the correct answer options with 'None of the above', all models exhibited a considerable decline in performance, suggesting room for improvement. The explain-first and step-by-step instruction prompts helped enhance the reasoning ability of the LLaMA 3.1 (405B), Gemini 1.5 Pro, and Claude 3.5 Sonnet models. Conclusion: These recently released LLMs demonstrated expert-level performance in answering radiation oncology physics questions, exhibiting great potential to assist in radiation oncology physics education and training.

physics.med-ph↗

arXiv2025

Domain-Adaptive Diagnosis of Lewy Body Disease with Transferability Aware Transformer

Lewy Body Disease (LBD) is a common yet understudied form of dementia that imposes a significant burden on public health. It shares clinical similarities with Alzheimer's disease (AD), as both progress through stages of normal cognition, mild cognitive impairment, and dementia. A major obstacle in LBD diagnosis is data scarcity, which limits the effectiveness of deep learning. In contrast, AD datasets are more abundant, offering potential for knowledge transfer. However, LBD and AD data are typically collected from different sites using different machines and protocols, resulting in a distinct domain shift. To effectively leverage AD data while mitigating domain shift, we propose a Transferability Aware Transformer (TAT) that adapts knowledge from AD to enhance LBD diagnosis. Our method utilizes structural connectivity (SC) derived from structural MRI as training data. Built on the attention mechanism, TAT adaptively assigns greater weights to disease-transferable features while suppressing domain-specific ones, thereby reducing domain shift and improving diagnostic accuracy with limited LBD data. The experimental results demonstrate the effectiveness of TAT. To the best of our knowledge, this is the first study to explore domain adaptation from AD to LBD under conditions of data scarcity and domain shift, providing a promising framework for domain-adaptive diagnosis of rare diseases.

cs.LG↗

arXiv2025

SAMed-2: Selective Memory Enhanced Medical Segment Anything Model

Recent "segment anything" efforts show promise by learning from large-scale data, but adapting such models directly to medical images remains challenging due to the complexity of medical data, noisy annotations, and continual learning requirements across diverse modalities and anatomical structures. In this work, we propose SAMed-2, a new foundation model for medical image segmentation built upon the SAM-2 architecture. Specifically, we introduce a temporal adapter into the image encoder to capture image correlations and a confidence-driven memory mechanism to store high-certainty features for later retrieval. This memory-based strategy counters the pervasive noise in large-scale medical datasets and mitigates catastrophic forgetting when encountering new tasks or modalities. To train and evaluate SAMed-2, we curate MedBank-100k, a comprehensive dataset spanning seven imaging modalities and 21 medical segmentation tasks. Our experiments on both internal benchmarks and 10 external datasets demonstrate superior performance over state-of-the-art baselines in multi-task scenarios. The code is available at: https://github.com/ZhilingYan/Medical-SAM-Bench.

cs.CV↗

arXiv2025

Survey of HPC in US Research Institutions

The rapid growth of AI, data-intensive science, and digital twin technologies has driven an unprecedented demand for high-performance computing (HPC) across the research ecosystem. While national laboratories and industrial hyperscalers have invested heavily in exascale and GPU-centric architectures, university-operated HPC systems remain comparatively under-resourced. This survey presents a comprehensive assessment of the HPC landscape across U.S. universities, benchmarking their capabilities against Department of Energy (DOE) leadership-class systems and industrial AI infrastructures. We examine over 50 premier research institutions, analyzing compute capacity, architectural design, governance models, and energy efficiency. Our findings reveal that university clusters, though vital for academic research, exhibit significantly lower growth trajectories (CAGR $\approx$ 18%) than their national ($\approx$ 43%) and industrial ($\approx$ 78%) counterparts. The increasing skew toward GPU-dense AI workloads has widened the capability gap, highlighting the need for federated computing, idle-GPU harvesting, and cost-sharing models. We also identify emerging paradigms, such as decentralized reinforcement learning, as promising opportunities for democratizing AI training within campus environments. Ultimately, this work provides actionable insights for academic leaders, funding agencies, and technology partners to ensure more equitable and sustainable HPC access in support of national research priorities.

cs.DC↗

arXiv2025

RadFabric: Agentic AI System with Reasoning Capability for Radiology

Chest X ray (CXR) imaging remains a critical diagnostic tool for thoracic conditions, but current automated systems face limitations in pathology coverage, diagnostic accuracy, and integration of visual and textual reasoning. To address these gaps, we propose RadFabric, a multi agent, multimodal reasoning framework that unifies visual and textual analysis for comprehensive CXR interpretation. RadFabric is built on the Model Context Protocol (MCP), enabling modularity, interoperability, and scalability for seamless integration of new diagnostic agents. The system employs specialized CXR agents for pathology detection, an Anatomical Interpretation Agent to map visual findings to precise anatomical structures, and a Reasoning Agent powered by large multimodal reasoning models to synthesize visual, anatomical, and clinical data into transparent and evidence based diagnoses. RadFabric achieves significant performance improvements, with near-perfect detection of challenging pathologies like fractures (1.000 accuracy) and superior overall diagnostic accuracy (0.799) compared to traditional systems (0.229 to 0.527). By integrating cross modal feature alignment and preference-driven reasoning, RadFabric advances AI-driven radiology toward transparent, anatomically precise, and clinically actionable CXR analysis.

cs.CV↗

arXiv2025

Voxel-Level Brain States Prediction Using Swin Transformer

Understanding brain dynamics is important for neuroscience and mental health. Functional magnetic resonance imaging (fMRI) enables the measurement of neural activities through blood-oxygen-level-dependent (BOLD) signals, which represent brain states. In this study, we aim to predict future human resting brain states with fMRI. Due to the 3D voxel-wise spatial organization and temporal dependencies of the fMRI data, we propose a novel architecture which employs a 4D Shifted Window (Swin) Transformer as encoder to efficiently learn spatio-temporal information and a convolutional decoder to enable brain state prediction at the same spatial and temporal resolution as the input fMRI data. We used 100 unrelated subjects from the Human Connectome Project (HCP) for model training and testing. Our novel model has shown high accuracy when predicting 7.2s resting-state brain activities based on the prior 23.04s fMRI time series. The predicted brain states highly resemble BOLD contrast and dynamics. This work shows promising evidence that the spatiotemporal organization of the human brain can be learned by a Swin Transformer model, at high resolution, which provides a potential for reducing the fMRI scan time and the development of brain-computer interfaces in the future.

q-bio.NC↗

arXiv2025

MolQAE: Quantum Autoencoder for Molecular Representation Learning

We introduce Quantum Molecular Autoencoder (MolQAE), the first quantum autoencoder to leverage the complete molecular structures. MolQAE uniquely maps SMILES strings directly to quantum states using parameterized rotation gates, preserving vital structural information. Its quantum encoder-decoder framework enables latent space compression and reconstruction. A dual-objective strategy optimizes fidelity and minimizes trash state deviation. Our evaluations demonstrate effective capture of molecular characteristics and a remarkable preservation of fidelity, approaching robust molecular reconstruction even with substantial dimensionality reduction. Our model establishes a quantum pathway in cheminformatics by being the first to process complete molecular structural information with a dedicated quantum architecture considering the Noisy Intermediate-Scale Quantum (NISQ)-era development and promising significant advances in drug and materials discovery.

quant-ph↗

arXiv2025

Describe Anything in Medical Images

Localized image captioning has made significant progress with models like the Describe Anything Model (DAM), which can generate detailed region-specific descriptions without explicit region-text supervision. However, such capabilities have yet to be widely applied to specialized domains like medical imaging, where diagnostic interpretation relies on subtle regional findings rather than global understanding. To mitigate this gap, we propose MedDAM, the first comprehensive framework leveraging large vision-language models for region-specific captioning in medical images. MedDAM employs medical expert-designed prompts tailored to specific imaging modalities and establishes a robust evaluation benchmark comprising a customized assessment protocol, data pre-processing pipeline, and specialized QA template library. This benchmark evaluates both MedDAM and other adaptable large vision-language models, focusing on clinical factuality through attribute-level verification tasks, thereby circumventing the absence of ground-truth region-caption pairs in medical datasets. Extensive experiments on the VinDr-CXR, LIDC-IDRI, and SkinCon datasets demonstrate MedDAM's superiority over leading peers (including GPT-4o, Claude 3.7 Sonnet, LLaMA-3.2 Vision, Qwen2.5-VL, GPT-4Rol, and OMG-LLaVA) in the task, revealing the importance of region-level semantic alignment in medical image understanding and establishing MedDAM as a promising foundation for clinical vision-language integration.

cs.CV↗

arXiv2025

Aligning LLM with human travel choices: a persona-based embedding learning approach

The advent of large language models (LLMs) presents new opportunities for travel demand modeling. However, behavioral misalignment between LLMs and humans presents obstacles for the usage of LLMs, and existing alignment methods are frequently inefficient or impractical given the constraints of typical travel demand data. This paper introduces a novel framework for aligning LLMs with human travel choice behavior, tailored to the current travel demand data sources. Our framework uses a persona inference and loading process to condition LLMs with suitable prompts to enhance alignment. The inference step establishes a set of base personas from empirical data, and a learned persona loading function driven by behavioral embeddings guides the loading process. We validate our framework on the Swissmetro mode choice dataset, and the results show that our proposed approach significantly outperformed baseline choice models and LLM-based simulation models in predicting both aggregate mode choice shares and individual choice outcomes. Furthermore, we showcase that our framework can generate insights on population behavior through interpretable parameters. Overall, our research offers a more adaptable, interpretable, and resource-efficient pathway to robust LLM-based travel behavior simulation, paving the way to integrate LLMs into travel demand modeling practice in the future.

cs.AI↗

arXiv2025

ADLGen: Synthesizing Symbolic, Event-Triggered Sensor Sequences for Human Activity Modeling

Real world collection of Activities of Daily Living data is challenging due to privacy concerns, costly deployment and labeling, and the inherent sparsity and imbalance of human behavior. We present ADLGen, a generative framework specifically designed to synthesize realistic, event triggered, and symbolic sensor sequences for ambient assistive environments. ADLGen integrates a decoder only Transformer with sign based symbolic temporal encoding, and a context and layout aware sampling mechanism to guide generation toward semantically rich and physically plausible sensor event sequences. To enhance semantic fidelity and correct structural inconsistencies, we further incorporate a large language model into an automatic generate evaluate refine loop, which verifies logical, behavioral, and temporal coherence and generates correction rules without manual intervention or environment specific tuning. Through comprehensive experiments with novel evaluation metrics, ADLGen is shown to outperform baseline generators in statistical fidelity, semantic richness, and downstream activity recognition, offering a scalable and privacy-preserving solution for ADL data synthesis.

cs.LG↗

arXiv2025

From Assistants to Adversaries: Exploring the Security Risks of Mobile LLM Agents

The growing adoption of large language models (LLMs) has led to a new paradigm in mobile computing--LLM-powered mobile AI agents--capable of decomposing and automating complex tasks directly on smartphones. However, the security implications of these agents remain largely unexplored. In this paper, we present the first comprehensive security analysis of mobile LLM agents, encompassing three representative categories: System-level AI Agents developed by original equipment manufacturers (e.g., YOYO Assistant), Third-party Universal Agents (e.g., Zhipu AI AutoGLM), and Emerging Agent Frameworks (e.g., Alibaba Mobile Agent). We begin by analyzing the general workflow of mobile agents and identifying security threats across three core capability dimensions: language-based reasoning, GUI-based interaction, and system-level execution. Our analysis reveals 11 distinct attack surfaces, all rooted in the unique capabilities and interaction patterns of mobile LLM agents, and spanning their entire operational lifecycle. To investigate these threats in practice, we introduce AgentScan, a semi-automated security analysis framework that systematically evaluates mobile LLM agents across all 11 attack scenarios. Applying AgentScan to nine widely deployed agents, we uncover a concerning trend: every agent is vulnerable to targeted attacks. In the most severe cases, agents exhibit vulnerabilities across eight distinct attack vectors. These attacks can cause behavioral deviations, privacy leakage, or even full execution hijacking. Based on these findings, we propose a set of defensive design principles and practical recommendations for building secure mobile LLM agents. Our disclosures have received positive feedback from two major device vendors. Overall, this work highlights the urgent need for standardized security practices in the fast-evolving landscape of LLM-driven mobile automation.

cs.CR↗

arXiv2025

Evaluating Mathematical Reasoning Across Large Language Models: A Fine-Grained Approach

With the rapid advancement of Artificial Intelligence (AI), Large Language Models (LLMs) have significantly impacted a wide array of domains, including healthcare, engineering, science, education, and mathematical reasoning. Among these, mathematical reasoning remains a particularly challenging capability, often requiring multi-step logic and abstract generalization. While prior work has explored LLM performance on reasoning tasks, comprehensive evaluations that span both depth and breadth across model families remain limited. In this study, we present a systematic evaluation of mathematical reasoning abilities across eight leading LLMs, including two recent DeepSeek models, using three independent benchmark datasets. Our analyses reveal several key findings: (1) DeepSeek-R1 performs competitively with o1 across most domains and achieves the highest accuracy on the MMLU Formal Logic benchmark; (2) distilled variants, such as DeepSeek-1.5B, exhibit substantial performance degradation; and (3) Gemini 2.0 Flash achieves the lowest response latency. Beyond quantitative metrics, we explore how architectural choices, training paradigms, and optimization strategies contribute to variation in reasoning performance. These findings provide new insights into the capabilities and limitations of current LLMs in mathematical domains, and offer guidance for the development of future models better aligned with rigorous reasoning demands.

cs.LG↗

arXiv2025

Usable XAI: 10 Strategies Towards Exploiting Explainability in the LLM Era

Explainable AI (XAI) refers to techniques that provide human-understandable insights into the workings of AI models. Recently, the focus of XAI is being extended toward explaining Large Language Models (LLMs). This extension calls for a significant transformation in the XAI methodologies for two reasons. First, many existing XAI methods cannot be directly applied to LLMs due to their complexity and advanced capabilities. Second, as LLMs are increasingly deployed in diverse applications, the role of XAI shifts from merely opening the ``black box'' to actively enhancing the productivity and applicability of LLMs in real-world settings. Meanwhile, the conversation and generation abilities of LLMs can reciprocally enhance XAI. Therefore, in this paper, we introduce Usable XAI in the context of LLMs by analyzing (1) how XAI can explain and improve LLM-based AI systems and (2) how XAI techniques can be improved by using LLMs. We introduce 10 strategies, introducing the key techniques for each and discussing their associated challenges. We also provide case studies to demonstrate how to obtain and leverage explanations. The code used in this paper can be found at: https://github.com/JacksonWuxs/UsableXAI_LLM.

cs.LG↗

arXiv2025

HOME-3: High-Order Momentum Estimator with Third-Power Gradient for Convex and Smooth Nonconvex Optimization

Momentum-based gradients are essential for optimizing advanced machine learning models, as they not only accelerate convergence but also advance optimizers to escape stationary points. While most state-of-the-art momentum techniques utilize lower-order gradients, such as the squared first-order gradient, there has been limited exploration of higher-order gradients, particularly those raised to powers greater than two. In this work, we introduce the concept of high-order momentum, where momentum is constructed using higher-power gradients, with a focus on the third-power of the first-order gradient as a representative case. Our research offers both theoretical and empirical support for this approach. Theoretically, we demonstrate that incorporating third-power gradients can improve the convergence bounds of gradient-based optimizers for both convex and smooth nonconvex problems. Empirically, we validate these findings through extensive experiments across convex, smooth nonconvex, and nonsmooth nonconvex optimization tasks. Across all cases, high-order momentum consistently outperforms conventional low-order momentum methods, showcasing superior performance in various optimization problems.

cs.LG↗

arXiv2025

Permutation Randomization on Nonsmooth Nonconvex Optimization: A Theoretical and Experimental Study

While gradient-based optimizers that incorporate randomization often showcase superior performance on complex optimization, the theoretical foundations underlying this superiority remain insufficiently understood. A particularly pressing question has emerged: What is the role of randomization in dimension-free nonsmooth nonconvex optimization? To address this gap, we investigate the theoretical and empirical impact of permutation randomization within gradient-based optimization frameworks, using it as a representative case to explore broader implications. From a theoretical perspective, our analyses reveal that permutation randomization disrupts the shrinkage behavior of gradient-based optimizers, facilitating continuous convergence toward the global optimum given a sufficiently large number of iterations. Additionally, we prove that permutation randomization can preserve the convergence rate of the underlying optimizer. On the empirical side, we conduct extensive numerical experiments comparing permutation-randomized optimizer against three baseline methods. These experiments span tasks such as training deep neural networks with stacked architectures and optimizing noisy objective functions. The results not only corroborate our theoretical insights but also highlight the practical benefits of permutation randomization. In summary, this work delivers both rigorous theoretical justification and compelling empirical evidence for the effectiveness of permutation randomization. Our findings and evidence lay a foundation for extending analytics to encompass a wide array of randomization.

cs.LG↗