arXiv subjects

Xunkai Li

Publications and source records attributed to Xunkai Li.

At least 19 recordsLinked to original sources

arXiv2026

RouteDRAG: Learning to Route and Control Agentic Execution for Multimodal Document RAG

Web-based applications increasingly rely on understanding long multimodal documents, where answering questions often requires combining information across pages, tables, and figures. Agentic retrieval-augmented generation addresses these tasks through iterative retrieval and reasoning. However, Agentic execution is not always necessary, introducing additional computation and potentially incorrect answers. Our empirical analysis reveals that Agentic execution provides query-dependent benefits, while additional operations may improve, preserve, or degrade answer accuracy. These findings motivate controlling both Agent invocation and subsequent execution. To address these challenges, we propose RouteDRAG, a learning-based framework comprising four components. Unified Document Index organizes multimodal content into a graph-backed index and derives query representations from initial retrieval. Adaptive Path Routing preserves exact answering and predicts the relative benefit of Agent over shorter execution paths. Dynamic Agent Execution maintains an evolving workspace and refines Planner proposals to control tool use and termination. Sequential Policy Learning first trains operation control from observed outcomes and then trains path routing using the resulting Agent's performance. Across two benchmarks, RouteDRAG achieves an average accuracy improvement of 3.47 percentage points over shorter-path-only execution while assigning only 79.3% of queries to Agent. Notably, it also surpasses uniform Agent execution on both benchmarks while requiring fewer answering calls. Our code is now available at https://github.com/Ereshkigal1/RouteDRAG.

cs.AI↗

arXiv2026

OpenDGO: Benchmarking Multi-Agent Organizations Across Diverse Application Domains

Large language model (LLM)-based multi-agent systems are increasingly applied across diverse domains, yet different applications require different forms of agent organization. Existing studies typically adopt predefined organizations, such as Star, Chain, and Tree, or learn communication graphs to improve performance on specific tasks. However, these methods are largely designed and evaluated within a limited set of application domains, providing little understanding of whether an organization effective in one domain remains suitable for others with different collaboration requirements. We present \textbf{OpenDGO}, a controlled benchmark and analysis framework covering six real-world domains and three collaboration settings: Sequential Dependency, Parallel Decomposition, and Information Integration. Under matched tasks, agents, tools, and resource limits, OpenDGO compares fixed and learned organizations while separately examining communication graphs, role assignments, input assignments, resource budgets, and component failures. Our results show that there is no ``one-organization-for-all'' solution: preferred organizations vary across applications, and even the same communication graph can yield different outcomes under different role and input assignments. These findings highlight the need for application-dependent organization design, aiming to understand \emph{which organization is suitable for a given application, under what conditions, and why}.

cs.LG↗

arXiv2026

LLaTA: Unlocking Graph Structure Learning with Tree-Guided Large Language Models

The emergence of large language models (LLMs) has popularized text-attributed graphs (TAGs), creating an urgent need for graph structure learning (GSL) methods that effectively leverage textual information. However, existing GSL approaches are designed for traditional graphs without text, and adapting them to LLMs faces two challenges: defining a suitable optimization objective given LLMs' massive parameters, and designing an efficient architecture without costly fine-tuning. To address these, we propose LLaTA (Large Language and Tree Assistant), which reformulates GSL as a tree optimization framework---shifting from training edge predictors to designing a language-aware tree sampler. LLaTA constructs structural encoding trees via entropy minimization to capture topology, then leverages tree-guided LLM in-context learning to integrate textual semantics without fine-tuning. Extensive experiments on 11 datasets demonstrate LLaTA's flexibility with any backbone, superior scalability over LLM-based GSL methods, and state-of-the-art effectiveness across diverse domains.

cs.LG↗

arXiv2026

No-Free-Graph: Learning When Multimodal Data Should Be Graphified

Multimodal graph learning has recently emerged as an effective paradigm for in corporating inter-entity relationships into multimodal representations. Existing studies have made substantial progress on how to construct and optimize graphs, but rarely consider a more fundamental question: whether additional relational structures should be introduced for a given dataset and task. Through empirical studies across diverse datasets, tasks, and graph constructors, we reveal that graphification is not consistently beneficial: introducing relational structures can provide substantial improvements in some cases, while offering limited or even negative gains. This observation motivates a new perspective that graph construction should be treated as a selective decision based on its expected utility rather than a default preprocessing step. To address this issue, we propose MAG-SCOUT, a pre-construction graph assessment framework that estimates whether introducing graph structures is beneficial before generating the complete topology. MAG-SCOUT collects limited relational evidence, analyzes its potential taskspecific contribution, and estimates the expected utility of graphification together with construction cost to make a build-or-skip decision. Extensive experiments across six multimodal datasets, three downstream tasks, and diverse graph constructors demonstrate that MAG-SCOUT effectively identifies when graph structures should be introduced, saving 33.1% of task-macro graph work while retaining 96.7% of held-out positive-gain mass under the pre-registered floor.

cs.LG↗

arXiv2026

Toward Omni Multimodal Graph Foundation Model: A Topology-Driven Binding Approach

Multimodal graph foundation models (MGFMs) seek to learn generalizable representations from large-scale graphs with heterogeneous node modalities. However, real-world Multimodal-Attributed Graphs (MAGs) often contain incomplete node attributes, limiting the scale and diversity of available pretraining corpora. Besides, existing MGFMs primarily incorporate graph topology as structural context, overlooking its role in guiding multimodal binding and shaping a unified representation space. To address these challenges, we propose GraphBind, a topology-driven approach that uses graph topology to bind rich modality information into a unified shared space. GraphBind is motivated by the stability of graph topology, which provides structural references and complementary semantic information for multimodal binding. Concretely, GraphBind uses topology to organize self semantics and reliable neighborhood semantics into a global shared space that integrates structure and semantics, and adapts this space to discriminative and generative tasks through lightweight interfaces. Extensive experiments against 11 representative baselines demonstrate that GraphBind achieves leading performance on both discriminative and generative tasks, with relative improvements of up to 28.1% over the strongest baseline.

cs.LG↗

arXiv2026

OmniVCBench: Benchmarking Evidence-Grounded Multimodal Reasoning Towards AI Virtual Cells

Artificial Intelligence Virtual Cells (AIVCs) are envisioned as scientific agents that simulate cellular responses, explain underlying mechanisms, and support hypothesis-driven discovery. Existing AIVC benchmarks, however, operate primarily at the simulation layer, motivating complementary evaluation of how models interpret experimental evidence and formulate biological hypotheses. We introduce OmniVCBench, a figure-centric, source-traceable benchmark for the interpretation component of an AIVC. It contains 6,077 curated single- and multi-subfigure question--answer pairs derived from figures and experimental contexts in the scientific literature. Guided by Bloom's taxonomy, we instantiate interpretation-layer counterparts of the AIVC Predict--Explain--Discover agenda through three scientific reasoning tasks. We further introduce AIVC-Judge, a task-conditioned MLLM-as-a-judge framework with category-specific, reference-aware rubrics for evaluating open-ended responses. A complementary Model-Derived Hard-Negative Mining (MDHNM) strategy converts plausible errors observed during model inference into MCQ distractors for lower-cost evaluation. Within the evaluated heterogeneous model pool, MCQ accuracy correlates positively with AIVC-Judge scores, providing a complementary view of performance alongside open-response evaluation. Code and data demo are available at https://anonymous.4open.science/r/OmniVCBench.

cs.AI↗

arXiv2026

GraphSelect for Budgeted Representation Selection in Multimodal Graph Inference

Multimodal graph predictors combine text, images, and relations to classify connected entities. How much of this input is needed to preserve their predictions? We study budgeted representation selection, which chooses a subset of candidate text and image vectors under a separate capacity for each modality. Predictions from the complete candidate input define the classes to preserve. The challenge is that a representation's contribution depends on the other selected inputs, while graph propagation extends its effects across nodes. Our empirical study shows that candidate rankings change with the selected input, while predicted probabilities remain informative after the class stops changing. Updating scores improves selection, and exchanging inputs can improve a subset whose capacity is already filled. These findings lead to GraphSelect, which starts from individual candidate gains and refines the subset through jointly evaluated exchanges. It screens promising removals and additions, accepts an exchange when it reduces the prediction loss, and updates the scores. Experiments on six graphs show higher mean objective recovery than six attribution and explanation methods adapted to the selection task. Across nine trained architectures on two graphs, retaining 20% of the candidate representations per modality gives a mean accuracy drop of 0.10 percentage points relative to full candidate input, preserving classification performance with substantially fewer text and image representations.

cs.LG↗

arXiv2026

GOMA: Toward Structure-Driven Multimodal Alignment from a Graph Signal Smoothing Perspective

Multimodal retrieval uses images, text, and object relationships to answer different questions about the same collection. A query may seek an object's paired description, another object in the same category, or an object connected by an observed relationship. These goals rely on different notions of relevance. Paired matching requires object-specific distinctions, whereas cross-object retrieval benefits from relational agreement. Existing methods learn strong cross-modal correspondence or propagate information over a graph, but a shared output regularized toward neighbors can weaken identity distinctions. Moreover, gains from graph regularization can diminish after uniform graph propagation. We introduce Graph-Optimized Multimodal Alignment (GOMA), which assigns these roles to two connected embeddings. Each modality produces a content embedding directly supervised for paired identity and a semantic embedding jointly trained with cross-modal pairs and observed relationships. For complete records, both embeddings form an initial fused representation, semantic agreement sets positive weights on observed edges, and restart graph propagation reinjects this initial signal. This design lets a jointly trained model support single-modality and dual-attribute retrieval through a task-specific readout. Across six datasets and four tasks, GOMA achieves state-of-the-art performance on all 14 primary measures against 14 external methods. Controlled comparisons further show how separate supervision, graph regularization, and semantic-guided graph propagation shape the final representation and align the learned signal with each retrieval target.

cs.LG↗

arXiv2026

ICE: Task-Aligned Clifford Latent Fields for Multimodal Graph Foundation Models

Multimodal attributed graphs connect entities, visual content, language, and observed relations. Learning one foundation across such graphs requires more than compressing each node into a fused Euclidean vector. The representation must preserve entity semantics, construct interaction state from graph neighborhoods, and expose that state to prediction units with different geometry. Our empirical study shows why these requirements are inseparable. Higher-grade channels recover pair relations across the foundation graphs, specialized queries reveal information hidden by a generic readout, and rigid blade isolation removes cross-grade capacity. We therefore introduce ICE (Interaction-aware Clifford Encoder), a multimodal graph foundation model built on a node-indexed Clifford latent field. Topology, text, and images enter explicit Cl(3) addresses. Edge-aware geometric products transform these directions into scalar, bivector, and trivector relations over observed neighborhoods. A protected Grade-1 route preserves entity semantics, while the full grade and depth bank remains available to fresh node and link heads. We establish exact cross-grade reachability, node-permutation equivariance, and a bound on the task residual around the semantic score. Experiments span one shared foundation over eleven graphs, six node-classification datasets, three link-prediction datasets, and matched few-shot tasks. ICE ranks first in all 30 reported supervised and few-shot comparisons. Core removals reduce every task summary, and mechanism controls connect the gains to higher-order transport, retained multidepth structure, semantic protection, and direct field access.

cs.LG↗

arXiv2026

MOVE: Multimodal Open-world Verification and Expansion for Graph Learning

Multimodal graph learning faces a fundamental challenge: new classes may emerge after deployment, while models are trained with a fixed label space. Existing approaches typically detect unknown nodes and use LLMs to generate candidate class descriptions, but they do not determine whether existing classes are insufficient to cover these nodes or whether a generated class is reliable enough to expand the class space. Our empirical study reveals three challenges: multimodal information beyond individual modalities is required for unknown-node identification, LLM-generated class descriptions may not fully capture multimodal class characteristics, and directly adding candidate classes can introduce redundant categories. Based on these observations, we propose MOVE, a multimodal open-world class verification and expansion framework. MOVE identifies nodes that cannot be assigned to existing classes by jointly considering visual tokens, textual attributes, and graph context, leverages a multimodal LLM to generate candidate classes, and selectively expands the class space only when candidates are consistently supported by multimodal evidence without introducing unnecessary categories. Experiments demonstrate that MOVE achieves an average improvement of 11.87\% across unknown recognition, open-domain annotation, and downstream graph learning tasks.

cs.LG↗

arXiv2026

Coupling Perception and Reasoning in Federated Multimodal Graph Foundation Models

Federated multimodal graph foundation models (GFMs) aim to adapt pretrained multimodal models to decentralized graph data, where each client owns a private multimodal graph and cannot share raw information. These models typically combine a multimodal Encoder that extracts semantic evidence from heterogeneous modalities and a graph neural network (GNN) that performs relational reasoning over graph structures. However, existing federated GFM adaptation methods mainly update graph-side modules while keeping the multimodal Encoder frozen, limiting adaptation to \emph{how information is propagated} while fixing \emph{what information is extracted}. Through empirical studies, we reveal that Encoder and GNN adaptations are not independent: Encoder adaptation is affected by graph relations, while cross-client module swapping reveals substantial pairing sensitivity between separately parameterized Encoder and GNN updates. Motivated by this observation, we propose \textbf{FedCORE}, a federated adaptation framework that represents Encoder and GNN updates through a shared low-dimensional latent state. FedCORE jointly optimizes this core from multimodal and structural signals and performs federated evolution directly in the shared state space, preserving compatibility between perception and reasoning adaptations. Extensive experiments demonstrate that FedCORE reduces the Encoder--GNN pairing gap from $30.6$ to $5.9$, corresponding to an $80.7\%$ reduction over independent joint adaptation.

cs.LG↗

arXiv2026

MAGIC: Mixed-Granularity Agent Graphs via Incremental Construction with Dense-Reward Reinforcement Learning

Collaboration topology shapes both the performance and execution cost of LLM-based multi-agent systems. Because tasks differ in complexity and required capabilities, recent approaches generate task-specific collaboration graphs that specify agent participation and information flow. However, representative topology generators use either individual agents or predefined groups throughout an organization, overlooking differing collaboration needs across subtasks. Our key insight is to select granularity locally for each functional role, combining fine-grained control with reusable collaboration patterns within one organization. Learning such organizations requires exploring a combinatorial construction space with limited intermediate feedback from final-answer rewards. Therefore, we propose MAGIC, a dense-reward reinforcement learning framework for mixed-granularity graph generation. Specifically, MAGIC constructs a mixed-granularity agent graph by sequentially selecting a functional role, instantiating it as a single agent or reusable group, and connecting it to existing units. We directly optimize the construction policy using returns from trajectories sampled under the current policy and use potential-based reward shaping to provide intermediate feedback from probe-based utility and structural signals while preserving the cumulative task reward. MAGIC outperforms state-of-the-art baselines across eight benchmarks and demonstrates strong inference efficiency in our efficiency study.

cs.LG↗

arXiv2026

OpenMAS-GCom. A Diagnostic Benchmark for Graph-enhanced Multi-Agent Systems

Graph-enhanced multi-agent systems (G-MAS) coordinate large language model agents through communication graphs and role assignments, which determine how agents exchange information and divide responsibilities. However, final-score comparisons across systems combine differences in models, communication patterns, roles, and computation costs, making performance differences difficult to attribute to specific communication structures, role assignments, and information flows. To address this evaluation attribution problem, we introduce OpenMAS-GCom, a benchmark for diagnosing how these components affect G-MAS performance through controlled interventions. We represent systems through collaboration units, communication links, shared intermediate information, and execution rules. OpenMAS-GCom compares original systems with versions modified by changing one component while keeping tasks, models, prompts, and budget limits fixed. We rewire communication edges, remove specialist or critic agents, replace intermediate messages with incorrect content, and disable workers during execution. The benchmark evaluates 17 single-agent, ordinary multi-agent, and graph-enhanced configurations on 29 datasets across six domains. We add 400 G-MAS-Complex tasks requiring agents to combine information from multiple documents, resolve conflicting records, and return specified values with source identifiers. Experiments show larger mean losses after specialist removal than after critic removal, different performance degradation under incorrect messages and worker failures despite similar original scores, and different configurations achieving the highest accuracy and accuracy per token on G-MAS-Complex.

cs.LG↗

arXiv2026

MACE: Memory-Agent Co-Evolution with Adaptive Memory Graphs for Multi-Agent Systems

LLM-based multi-agent systems generate collaboration traces that record how agents plan tasks, verify intermediate results, and repair failures. Reusing these procedures requires preserving an action's prerequisites and the outputs needed by subsequent agents. Our empirical studies show that grouping these dependencies into functional memory units improves their retention, while connecting units increases retrieval of the units and links jointly required by a task. The preferred combination of units also changes between instructions and checklists, even when each combination's content is fixed across formats. Updating choices from the outcomes of each combination and format pairing outperforms scoring combinations and formats separately. These findings motivate MACE, a memory-agent co-evolution framework that adapts memory organization and agent memory use through execution feedback. Its MemGoG structure represents functional units as subgraphs of related conditions, actions, and outputs, connecting them through support, conflict, and repair relations. MACE Loop selects task-relevant units and relations within a memory budget and provides each agent with instructions or checklists for its current operation. It records the selected units, presentation formats, agent outputs, and task outcomes to update unit scores and relations for retrieval and inform subsequent presentation choices. Across eight benchmarks, MACE outperforms ten baselines with an average score of 81.11%, compared with 78.97% for the strongest baseline, SAGE.

cs.LG↗

arXiv2026

Towards Unified Multimodal Graph Foundation Model: A Bridge-Router-Adapter Based Approach

Multimodal graphs couple node attributes in different modalities, such as text and images, with relational structure, enabling topological structure and cross-modality attributes to be modeled jointly. Multimodal graph foundation models seek unified representations from such data that transfer across different graph domains and downstream tasks. However, existing methods exhibit two fundamental limitations. (1) Cross-Scope Context Entanglement. They merge scope-specific graph contexts into a unified representation, obscuring their distinctions during multimodal construction. (2) Scope-Ignorant Modality Routing. They route modalities within a fixed graph scope, overlooking how modality relevance varies across neighborhood ranges. To address these challenges, we propose BRAIN, a unified model that focuses on graph context that combines neighborhood scope with modality composition. BRAIN comprises a scope-conditioned Bridge that combines structural information spanning local-to-global neighborhood scopes with different modality compositions; a hierarchical Router that estimates the relevance between the scope and the task, and selects compositions separately within each scope, allowing modality utility to vary with graph range; and a lightweight residual Adapter that further specializes the routed embedding for downstream prediction. BRAIN is trained through multi-graph pretraining followed by task-specific adaptation. Experiments across nine datasets and four task families demonstrate its broad effectiveness, improving node-classification and link-prediction performance by up to 4.73% relative to the strongest baseline, while achieving an average relative improvement of 14.72% across four graph-to-text and two graph-to-image metrics.

cs.LG↗

arXiv2026

PAGE-RAG: Provenance-Aware Graph Evidence Promotion for Fixed-Budget Multi-hop Retrieval-Augmented Generation

Multi-hop question answering in retrieval-augmented gener?ation (RAG) often benefits from retrieving beyond the few candidates that will finally be read: narrow retrieval can miss an indispensable hop, while expanded retrieval introduces topical distractors. This challenge is not tied to a particu?lar knowledge-base format. Candidate pools may come from standalone retrievers, standard RAG backends, or graph-based retrieval pipelines. What is needed is a query-aware selection layer that can use relational structure to filter candidates be?fore generation. PAGE-RAG addresses this setting by using a graph as a temporary selection structure, rather than assum?ing a graph-structured knowledge base. It builds a query-local graph over retrieved candidates, records why candidates are connected, and treats each connection as a support hypothe?sis rather than support itself. We identify the resulting failure mode as a connectivity-support gap: connected candidates do not necessarily support the answer. We propose PAGE-RAG, a Provenance-Aware Graph Evidence promotion method that scores candidate paths with relevance, source-tracing meta?data, specificity, hubness, noise, and coherence signals, and applies minimal sufficient selection to promote supporting facts into a compact reader context. PAGE-RAG can serve as a complete retrieval-to-reading pipeline, and the same promo?tion stage can be inserted after existing retrieval or RAG sys?tems without replacing their upstream retrieval logic. Across three multi-hop QA benchmarks under the same final bud?get, PAGE-RAG improves support F1 and answer F1 by 10.4 and 3.3 points on a weighted average over a strong retriever. As a plug-in, PAGE-RAG further improves all reported RAG backends, including reasoning-oriented, compression-based, graph-based, and document/chunk-level systems.

cs.AI↗

arXiv2026

LION: A Clifford Neural Paradigm for Multimodal-Attributed Graph Learning

Recently, the rapid advancement of multimodal domains has driven a data-centric paradigm shift in graph ML, transitioning from text-attributed to multimodal-attributed graphs. This advancement significantly enhances data representation and expands the scope of graph downstream tasks, such as modality-oriented tasks, thereby improving the practical utility of graph ML. Despite its promise, limitations exist in the current neural paradigms:(1) Neglect Context in Modality Alignment: Most existing methods adopt topology-constrained or modality-specific operators as tokenizers.These aligners inevitably neglect graph context and inhibit modality interaction, resulting in suboptimal alignment.(2) Lack of Adaptation in Modality Fusion: Most existing methods are simple adaptations for 2-modality graphs and fail to adequately exploit aligned tokens equipped with topology priors during fusion, leading to poor generalizability and performance degradation.To address the above issues, we propose LION (c\underline{LI}ff\underline{O}rd \underline{N}eural paradigm) based on the Clifford algebra and decoupled graph neural paradigm (i.e., propagation-then-aggregation) to implement alignment-then-fusion in multimodal-attributed graphs. Specifically, we first construct a modality-aware geometric manifold grounded in Clifford algebra.This geometric-induced high-order graph propagation efficiently achieves modality interaction, facilitating modality alignment.Then, based on the topology-aware Clifford components of aligned tokens, we propose adaptive holographic aggregation. This module integrates component-wise energy and propagation-scale information with learnable parameters to improve modality fusion. Extensive experiments on 9 text-image MAG datasets demonstrate that LION significantly outperforms SOTA baselines across 3 graph and 3 modality downstream tasks.

cs.LG↗

arXiv2026

SAHC-NS: Structure-Aware and Hardness-Calibrated Negative Sampling for Implicit Collaborative Filtering

Negative sampling is a key component of implicit collaborative filtering (CF), as it enables recommenders to effectively learn user preferences. Existing negative sampling methods mostly follow a two-stage paradigm: they first construct a candidate negative pool for each user and then select negative samples from the pool according to predefined sampling rules. However, these methods usually overlook the hardness variation of candidate negative pools across users, making it difficult to adaptively adjust the hardness and informativeness of negative samples according to candidate-pool conditions. In addition, most existing samplers evaluate candidate negatives mainly through a matching score computed from the final aggregated user and item embeddings, while ignoring the structural differences captured by multi-hop neighborhood aggregation. As a result, the training value of negatives may be insufficiently characterized. To address these issues, we propose SAHC-NS, a Structure-Aware and Hardness-Calibrated Negative Sampling method. Specifically, SAHC-NS uses the mean and standard deviation of layer-wise matching scores to capture the overall matching strength and cross-layer structural discrepancy of candidate negatives, respectively. This enables SAHC-NS to select informative negatives by taking cross-layer structural discrepancy into account, rather than relying solely on final matching scores. Moreover, SAHC-NS introduces a candidate-pool-aware hardness calibration module to dynamically adjust negative augmentation strength according to candidate-pool hardness, producing hardness-controllable negatives. Extensive experiments demonstrate the superiority of SAHC-NS over existing negative sampling methods.

cs.IR↗