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Yuxuan Liu

Publications and source records attributed to Yuxuan Liu.

At least 19 recordsLinked to original sources
arXiv2026

Graph-structured joint-embedding prediction for single-cell transcriptomics

Single-cell transcriptomes are sparse, unordered measurements of coordinated biological activity, yet many self-supervised models define their learning target at the level of individual genes or reconstructed expression values. Here we introduce GB-JEPA, a joint-embedding predictive architecture in which graph-connected gene blocks form the latent prediction units. A student encoder observes the genes outside each target block, whereas an exponential-moving-average teacher represents the full observed gene set. Teacher states are aggregated within a block before the prediction error is evaluated, converting thousands of sparse gene-level targets into a small collection of intermediate-scale latent targets. The graph therefore serves not only as prior information, but also as a mechanism for controlling the structure, scale and predictability of self-supervision. We evaluate the resulting frozen cell representations through objective diagnostics, cell-state annotation, continuous-expression and pathway probes, perturbation-response prediction, computational measurements and direct biological interrogation. This study presents a graph-structured route for adapting JEPA learning to molecular observations and a general framework for designing prediction units from relationships native to a biological modality.

cs.LG↗
arXiv2026

MJev-Spatial: System One Spatial Intelligence via Native Attention Matching

Spatial intelligence lets an agent perceive and act in the physical world, and many of its judgments must be made at interaction rates: which spatial relation holds, how far an object is, or where to place it. Vision-language models (VLMs) produce these answers by free-form text generation, paying for autoregressive decoding and answer parsing even though the output space is compact: one of a few options, a scalar, or a 2D point. In light of this, we introduce MJev-Spatial, a System 1 multimodal decision model that tackles all three types of spatial understanding tasks within a unified classification framework. Specifically, MJev-Spatial treats each candidate as a class and scores it using the backbone's pretrained query and key projections, without adding parameters. The candidates are the given options for choice tasks, or value bins and image regions refined through coarse-to-fine classification for numerical and point prediction, respectively. At inference, each classification decision takes a single forward pass and generates no answer tokens. To train on heterogeneous spatial data efficiently, we supervise all coarse-to-fine stages jointly with teacher forcing in one forward pass, and combine this with length-aware global batching and cross-GPU load balancing, raising training throughput by 30.8% over the original batching strategy. Built on Qwen3.5-4B and trained on 12.3M question-answer pairs converted from existing spatial datasets, MJev-Spatial achieves the highest overall score (65.64%) among eight tested models, ranks first on seven of twelve benchmarks, and outperforms its unmodified autoregressive base model on all twelve, while running 2.5 times faster than the fastest autoregressive baseline and 5.6 times faster than the base model.

cs.CV↗
arXiv2026

Deep Learning-Enhanced Real-Time Wi-Fi Sensing Through Single Transceiver Pair

The advancement of next-generation Wi-Fi technology heavily relies on sensing capabilities, which play a pivotal role in enabling sophisticated applications. In response to the growing demand for large-scale deployments, contemporary Wi-Fi sensing systems strive to achieve high-precision perception while maintaining minimal bandwidth consumption and antenna count requirements. Remarkably, various deep learning-driven perception technologies have demonstrated the ability to surpass conventional resolution limits. However, the theoretical underpinnings of this phenomenon have not been thoroughly investigated in existing research. We find that under hardware-constrained conditions, the performance gains of deep learning in Wi-Fi sensing primarily originate from two aspects: prior information and temporal correlation, which act as specific forms of side information that reduce the estimation error bound. We construct a deep learning-based Wi-Fi sensing system using only a single transceiver pair and design experiments to validate these gains. The system achieves an average human pose estimation error of 0.2189 m and an average localization error of 0.6124 m, while operating in real time at 42 fps on commodity hardware.

eess.SP↗
arXiv2026

See What I Need, Dream What I Want: A Navigation Foundation Model on a Self-Constructed Representation Space

What visual representation should a navigation policy act on? Navigation policies built on vision foundation models largely leave representation design to the encoders' pretraining objectives. We present RepresentNav, a navigation foundation model built on a self-constructed representation space: a visual representation constructed by the policy's own objectives from vision foundation models. RepresentNav builds this space with Representation Residuals, a compact three-layer transformer that attends over features spanning the full depth of multiple complementary vision foundation models, so that the policy learns to see what it needs for navigation. In the same space it dreams what it wants: before every action a latent chain-of-thought predicts the representation of the scene a moment ahead. The dream is trained end-to-end with the policy as a joint-embedding predictive architecture (JEPA), with a next-representation prediction loss and a regularizer on its targets. RepresentNav sets a new state of the art on VLNVerse, VLN-CE R2R, EVT-Bench, and two point-goal benchmarks, and its gains carry over to a physical robot amid clutter and moving people. On VLNVerse fine-grained, RepresentNav achieves 83.80% success, outperforming the previous state of the art by 20.05 percentage points, and on EVT-Bench distracted tracking it reaches 85.5% with a single camera (+10.1). With the same encoders, the self-constructed space clearly outperforms concatenating their outputs and learns to weight their layers unevenly, and a dream in it cuts collisions by a quarter. A single dreamed latent decodes into the depth, semantics, and 3D occupancy of the scene a moment ahead, more accurately than pretrained encoders applied to the real future frame, although occupancy is never supervised, and the rollout tracks the robot's own motion over the next second: the dream emerges as a compact latent world model.

cs.RO↗
arXiv2026

SciFigBench: A Benchmark for Scientific Method Figure Understanding

Scientific method figures often provide researchers with a clear visual entry point into a paper's methodology and core contributions, yet their dense layouts and complex information flows are difficult for Vision Language Models (VLMs) to interpret. Existing benchmarks predominantly focus on coarse-grained tasks, such as context-based retrieval or holistic comprehension, overlooking the fine-grained content and inter-module relations within complex methodological diagrams. To address these overlooked aspects, we introduce Scientific Figure Benchmark (SciFigBench), a benchmark for evaluating core capabilities required for scientific method figure understanding. Specifically, it targets three capabilities: dense content perception, visual relation comprehension, and information-flow tracing. For this purpose, we curate 4,352 scientific method figures from real-world research papers and construct 40,670 QA pairs to operationalize these capabilities as measurable question-answering tasks. All annotations are generated by dedicated pipelines and then manually verified. We further propose SciFigCue, a training-free visual prompting module that externalizes arrow-induced dependencies as visual relational evidence for method-figure reasoning. Experiments across open-source and proprietary VLMs show that even strong models remain substantially limited in visual relation comprehension, while SciFigCue improves performance across several tasks without parameter updates. The code and related resources are available at https://github.com/LeNcyer/SciFigBench.

cs.CV↗
arXiv2026

Behave Like Experts: Fusing Data with Semantic Knowledge for Effective and Efficient Semantic Map Construction

Semantic map models (SMMs) construct a graph that reflects conceptual similarity by comparing cross-lingual form-meaning mappings. Experts build such models not only by obeying the data constraint, i.e., the connectivity hypothesis, which states that conceptual nodes belonging to the same form must be connected, but also by incorporating their prior semantic knowledge. Current automatic methods ignore this knowledge, which harms both accuracy and efficiency by enlarging the search space of candidate graphs. In this paper, we fuse the distributional semantic knowledge hidden in the internal representations of language models into a top-down, data-driven algorithm. This expert-like behavior re-sorts the candidates in a huge search space, guided by conceptual semantics similarity. Experiments on a self-collected benchmark of 10 datasets and comprehensive metrics show that our method builds SMMs both effectively and efficiently.

cs.CL↗
arXiv2026

First Passage Attention

Augmenting softmax attention with forget gates typically relies on summing decay contributions along the key--query path. Because such accumulation is monotonic, these mechanisms cannot selectively erase intermediate context while preserving older, structurally relevant tokens. We propose First Passage Attention (FPA), which shifts from path summation to path extrema by lowering a key's logit proportionally to the deepest dip of a learned scalar field below that key's level over the intervening span. FPA encompasses the Forgetting Transformer (FoX) as a special case, and when the field and levels follow a shared learned walk, the alive keys with unpenalised logits naturally form a stack. We show that a constant-dimension FPA head realises any subset of keys left alive by subsequent dips, whereas softmax heads with positional biases or token-level forget gates require a head dimension linear in the number of keys. In synthetic experiments, one-layer FPA heads converge to these target sets while comparable softmax and FoX baselines fail on every seed. Scaling to a 110M-parameter language model, FPA matches FoX in perplexity and uniquely achieves perfect passkey retrieval at $8\times$ the training length, even with its key--value cache compressed to about $25\%$.

cs.CL↗
arXiv2026

JockeyBench: Evaluating LLM Agents on Horse-Racing Decision-Making

Repeated event forecasting requires extracting predictive signals from noisy evidence and evaluating their value across successive decisions. We introduce JockeyBench, a benchmark and evaluation protocol that studies this problem through historical Japanese horse racing. The protocol combines time-gated evidence, priced tools, paired frozen-program controls, and two workflows: executing an LLM-written predictor or acquiring evidence for a fresh per-race LLM forecast. Evaluation separates forecast quality, benchmark-specific net utility, and retrospective betting returns and risk under fixed decision rules. Across 28 model--scaffold configurations on 324 races, paired tests identify seven revision gains and two declines after multiple-testing correction. Yet every configuration has negative mean profit under capped-Kelly settlement. In a four-model comparison, the reusable-program workflow has higher mean betting profit and lower research fees, although both workflows lose on average. Further diagnostics reveal that mean probability bias reverses on selected bets and that profitable individual runs can depend on concentrated returns. These findings motivate evaluating predictive competence, adaptation, resource use, and decision value separately when assessing agents for repeated event forecasting.

cs.AI↗
arXiv2026

Illusion of Alignment: Detecting Hidden Disagreement in Collaborative Dialogue

Collaborative dialogue can end with apparent agreement while participants still differ on goals, assumptions, or execution plans, creating an \textbf{illusion of alignment (IoA)}. A real-user study across 18 meetings confirms that IoA arises routinely in human collaboration. Yet IoA poses a paradox: if participants were aware of such disagreements, they would already be explicit; if not, they cannot articulate them when asked, leaving IoA invisible to both participants and observers. In this work, we make IoA detectable by generating diagnostic multiple-choice questions whose divergent answers across participants provide direct behavioral evidence of hidden disagreement. We construct \textbf{IoA-Suite}, a dataset and evaluation protocol for detecting hidden disagreement, spanning five task types and six domains. We find that even the best model attains only 49.5\% F1, with the bottleneck traced to private context that the dialogue does not surface. We then train \textbf{IoA-Prober-8B} based on IoA-Suite, reaching 51.8\% F1 on IoA-Suite. Across the aforementioned 18 real meetings, it surfaces 2.89 hidden disagreements per meeting that participants confirm they had not voiced, transferring to live human dialogue. Further, in multi-agent collaboration, pairing IoA-Prober-8B with LLM agents improves downstream task performance on BigCodeBench-Hard and HiddenBench.

cs.AI↗
arXiv2026

SoFT: Soft Targets for Generalizable LLM Fine-Tuning

Distillation enables student language models to acquire new capabilities from expert teachers. However, integrating knowledge from multi-teacher, multi-domain demonstrations into a single student remains challenging. We study supervised fine-tuning (SFT) in this setting, where students must acquire diverse capabilities while maintaining generalization beyond the training tasks. Our experiments reveal varying trade-offs between in-distribution learning and out-of-distribution generalization across SFT methods, motivating more explicit control over this balance. To this end, we propose soft-target fine-tuning (SoFT) to balance learning from teacher demonstrations with retaining the Base model's existing capabilities. SoFT sets a minimum target probability for each demonstrated token while making the smallest KL change to the Base distribution. The resulting objective couples learning from demonstrations with adaptively weighted regularization toward the Base model. We further use domain-specific gradient budgets to control this balance and determine a probability threshold for each trajectory. Experiments on mixed-domain reasoning and agentic tasks show that SoFT achieves the best overall performance among the compared methods, with improvements in both in-distribution capability acquisition and out-of-distribution generalization.

cs.LG↗
arXiv2026

Instructions Are Evidence, Not Objectives: Measuring Outcome Alignment of Agents

Large language model agents can follow complex human instructions to solve real-world tasks. In practice, however, initial instructions are often incomplete. In our analysis of 100 user-agent trajectories from SWE-chat, 56\% of initial instructions omit requirements that later emerge as necessary, and 52\% of the useful follow-up requirements could have been inferred from the project. A user states requirements from their own understanding of the task, and these \textbf{stated requirements} often differ from the \textbf{true requirements} that completing the task imposes. An agent should therefore treat the instruction as evidence rather than as the objective, inferring the true requirements from the instruction and the environment and satisfying them even when the user is not yet aware of all of them. We call this ability \textbf{outcome alignment}. In this work, we construct \textbf{TiGanEval}, a benchmark of software engineering and research tasks. In every task the user genuinely lacks part of the requirements, each requirement stays discoverable from the code and runtime behaviour of the environment, and requirements the agent infers are separated from those the user adds after observing delivered work. These properties together make outcome alignment measurable. Evaluating eight frontier models including GPT-5.6-Sol, we find outcome alignment broadly missing: the models lose 53 to 67 points of success rate when moving from the full specification to the partial instruction, and consequence feedback across four submissions does not close the gap. Furthermore, a plan-mode harness cannot compensate for the missing ability of the model itself, which places outcome alignment among the abilities the next generation of models should be developed for.

cs.AI↗
arXiv2026

RadixFlow: Filling Execution Bubbles in Prefix-Cached Hybrid LLM Serving

Prefix reuse improves LLM inference by sharing the KV cache of common prompt prefixes. This helps only if the scheduler can execute a matched branch in the current worker round. Schedulers assume that a matched prefix is ready, which holds for full attention but fails for hybrid LLMs. There, a branch (the consumer) may need recurrent state that another branch (the producer) is still computing in the same round. The native scheduler stops its waiting-queue scan at this blocked consumer, and the resulting head-of-line blocking creates \emph{execution bubbles}: idle batch slots that independent work could fill. We introduce RadixFlow, which decouples prefix matching from state readiness. Its state-ready traversal turns a global scan barrier into a local wait: only the consumer is blocked until the next round, while feasible independent branches keep filling the batch under the native state check. On five hybrid models, RadixFlow lowers mean latency by 3\% to 24\% and worker rounds by 11\% to 44\% at almost unchanged reuse. On the larger Qwen3.5 models, ablations show that most of the gain comes from traversal, which adds little on a full-attention control. Heavier rounds limit how much of this saving reaches latency.

cs.AI↗
arXiv2026

Jev-Guard: Fast Routing and Auditing Agent Actions over Editable Policy Trees

Agent harnesses require a low-latency guardrail model together with customizable audit policies. However, deploying an auto-regressive guardrail model remains challenging: such models incur high inference latency and are often poorly aligned with customized policies. To address these problems, we present Jev-Guard, a unified model for safety classification and policy routing. We further construct a policy tree over which Jev-Guard performs routing, spanning diverse domains including content moderation, cybersecurity, privacy, and legal compliance. Specifically, Jev-Guard first navigates the policy tree to select the applicable audit policy given the caller's audit context, and then performs safety classification conditioned on the retrieved policies. On 7,033 evaluation cases, Jev-Guard achieves 93.72\% safety accuracy, a mean latency of 58ms, and 93.10\% hierarchical routing accuracy. The full routing-and-classification pipeline averages 240ms. Furthermore, we integrate Jev-Guard into the Hermes harness framework. Across agent trajectories, its separate permission gate cuts mean review time per task from 4.80s for an SFT-LLM judge to 1.33s, with no policy violations are observed for either guard.

cs.CR↗
arXiv2026

Jev-ToM: Evaluating Theory of Mind in Typed Decision Models

Dialogue and collaborative assistants repeatedly judge what a partner knows, believes, or intends. Typed decision models offer a potential alternative to generative large language models for bounded Theory of Mind (ToM) selection. We present Jev-ToM, comparing five typed decision models and seven generative baselines on 11,117 English text questions from nine ToM benchmarks across six capability groups. TypeSafe Jev reaches 73.2% source-balanced accuracy including native controls and ranks first or second across all six capabilities, leading beliefs, goals/desires/intentions, and emotions. Other typed models show distinct strengths across tasks. Separate resource comparisons suggest that Jev could reduce the cost and waiting time of repeated ToM selection. Confidence-based selection remains benchmark-dependent, and supplied reasons can repair errors or overturn correct answers depending on their attachment. Candidate expansion reveals distinct selection and output-validity problems. Related-question cues account for most of Jev's downstream gains, with task-dependent effects from predicted states. The findings motivate testing Jev as a ToM selection component in assistants, with task-specific confidence calibration, candidate design, and output validation as integration priorities.

cs.CL↗
arXiv2026

Crossing the Gender Binary: Modelling Gendered Reference in Science Fiction and General Fiction

Science fiction is widely credited with unsettling gender. This article asks whether that holds at the linguistic level, in how readily gendered reference gives way to its counterpart, a neutral term, or other social category, and whether it separates the genre from general fiction. It does so by masking man/men, woman/women, and person/people across same-period science fiction and general fiction corpora and classifying RoBERTa's five likeliest substitutes by gender. Retention and displacement are permutation-tested over five resampling rounds, and the underlying sentences are read closely. Both corpora cross the gender binary in both directions, but unequally: where woman is masked, the model predicts a masculine term about twice as often as it predicts a feminine term where man is masked. Each mismatch marks a statistical surprise, a word the corpus did not expect there. Against this shared pattern, science fiction shows greater gender permeability than the general fiction corpus, placing man in feminine contexts more often than general fiction while the reverse rate holds steady. Its degendering tendency is stronger too, drawing both gendered terms toward the neutral. Beyond the binary, a masked woman also draws substitutes naming a social category and no gender far more often than a masked man does. In measuring the gender permeability of man, woman, and person in linguistic distribution and testing whether genre changes it, the study gives science fiction studies linguistic evidence for thematic claims and computational literary studies a pipeline applicable to other category vocabularies, such as race and class.

cs.CL↗
arXiv2026

Loss Curvature as a Sampling-Free Proxy for Memorization in Diffusion Models

Understanding the mechanism behind why diffusion models memorize their training data remains an open question in generative modeling. In this paper, we examine this question from two perspectives: (a) the model-level perspective concerning the onset of memorization in a model during training, and (b) the sample-level perspective concerning the proclivity of an individual sample to be memorized by a given model. We show that the so-called input loss curvature, or the Frobenius norm of the Hessian of the diffusion model's training loss, is an effective metric for quantifying both perspectives on memorization. In particular, we empirically demonstrate that input curvatures averaged across training and validation samples can identify when a model is likely to start regurgitating its training data when tracked over training time. However, this metric is not sufficient for measuring an individual sample's likelihood of being memorized. To address this perspective, we introduce a counterfactual definition of memorization in diffusion models, extending the analogous notion from supervised learning proposed by [Feldman, 2019]. We prove that this counterfactual memorization is controlled by the input curvature of the leave-one-out model, thus establishing a direct theoretical link between a sample's local loss landscape and its generation likelihood. We validate our derived bounds through several empirical experiments and show that input-dependent curvature provides a proxy for memorization.

cs.LG↗
arXiv2026

ChronoScribe: Semantic-Numerical Specialization for Instruction-Driven Time Series Forecasting

Recent advances in instruction-driven time series forecasting highlight a fundamental tension: systems must simultaneously master natural-language instruction following and precise numerical prediction. Current approaches often force a compromise. Large language models (LLMs) can interpret unstructured requests but may be inaccurate when asked to produce forecast values directly, whereas time series foundation models (TSFMs) provide numerical forecasts but typically require structured inputs specifying the target series, context window, and horizon. We present ChronoScribe, which applies semantic-numerical specialization to this workflow. A LoRA-adapted LLM proposes an execution path and context length; deterministic rules resolve the executable configuration. On the specialist path, a frozen TSFM produces quantile trajectories for the task-specified horizon. Deterministic trajectory summaries condition the response, while the LLM neither generates nor revises predicted values. We evaluate a Qwen3.5-9B--Chronos-2 implementation across 23 evaluation dimensions and 30 public datasets against eleven proprietary direct LLMs and three open TSFMs. ChronoScribe has the lowest error on sMAPE, MASE, WAPE, RMSE, and MAE among all evaluated systems, including fixed-context controls. Across these metrics, even the lowest direct-LLM error remains 2.0--2.7 times the corresponding ChronoScribe error. At the system level, ChronoScribe achieves a Task-Level Score (TLS) of 65.5, 10.6 points above the strongest direct-LLM baseline. The results support ChronoScribe's division of labor, in which the LLM handles interpretation, configuration, and communication while the TSFM handles numerical forecasting.

cs.AI↗
arXiv2026

Same Operation, Different Permission: Evaluating Whether Guardrails Honor Authorization

As language-model agents write code, move money and change records on behalf of users, deciding whether an action is authorized has become a central safety problem. Guardrails are often placed in front of these actions, yet few evaluations ask whether their decisions follow authorization: blocking unauthorized actions while still allowing the same actions under valid permission. We introduce \bench{}, a benchmark that contrasts authorization evidence for the same operation in its language track. It combines expert-annotated natural-language scenarios with executed and verified operations, plus externally sourced native-policy requests. \bench{} checks each decision for correctness, usability and resulting effect, and tracks each request across guardrail changes. Our experiments show that many blocked operations stem from failed reviews, not correct denials. Repairing the output format restores usable decisions but changes which authorized requests are honored, and adding a second reviewer removes some errors while rejecting valid authorization. Guardrails should therefore be evaluated on both the unauthorized actions they stop and the authorized actions they let through.

cs.AI↗