arXiv subjects

Zihan Li

Publications and source records attributed to Zihan Li.

At least 109 records · Page 6Linked to original sources

arXiv2023

Domain Mastery Benchmark: An Ever-Updating Benchmark for Evaluating Holistic Domain Knowledge of Large Language Model--A Preliminary Release

Domain knowledge refers to the in-depth understanding, expertise, and familiarity with a specific subject, industry, field, or area of special interest. The existing benchmarks are all lack of an overall design for domain knowledge evaluation. Holding the belief that the real ability of domain language understanding can only be fairly evaluated by an comprehensive and in-depth benchmark, we introduces the Domma, a Domain Mastery Benchmark. DomMa targets at testing Large Language Models (LLMs) on their domain knowledge understanding, it features extensive domain coverage, large data volume, and a continually updated data set based on Chinese 112 first-level subject classifications. DomMa consist of 100,000 questions in both Chinese and English sourced from graduate entrance examinations and undergraduate exams in Chinese college. We have also propose designs to make benchmark and evaluation process more suitable to LLMs.

cs.CL↗

arXiv2023

ScribbleVC: Scribble-supervised Medical Image Segmentation with Vision-Class Embedding

Medical image segmentation plays a critical role in clinical decision-making, treatment planning, and disease monitoring. However, accurate segmentation of medical images is challenging due to several factors, such as the lack of high-quality annotation, imaging noise, and anatomical differences across patients. In addition, there is still a considerable gap in performance between the existing label-efficient methods and fully-supervised methods. To address the above challenges, we propose ScribbleVC, a novel framework for scribble-supervised medical image segmentation that leverages vision and class embeddings via the multimodal information enhancement mechanism. In addition, ScribbleVC uniformly utilizes the CNN features and Transformer features to achieve better visual feature extraction. The proposed method combines a scribble-based approach with a segmentation network and a class-embedding module to produce accurate segmentation masks. We evaluate ScribbleVC on three benchmark datasets and compare it with state-of-the-art methods. The experimental results demonstrate that our method outperforms existing approaches in terms of accuracy, robustness, and efficiency. The datasets and code are released on GitHub.

cs.CV↗

arXiv2023

SwinMM: Masked Multi-view with Swin Transformers for 3D Medical Image Segmentation

Recent advancements in large-scale Vision Transformers have made significant strides in improving pre-trained models for medical image segmentation. However, these methods face a notable challenge in acquiring a substantial amount of pre-training data, particularly within the medical field. To address this limitation, we present Masked Multi-view with Swin Transformers (SwinMM), a novel multi-view pipeline for enabling accurate and data-efficient self-supervised medical image analysis. Our strategy harnesses the potential of multi-view information by incorporating two principal components. In the pre-training phase, we deploy a masked multi-view encoder devised to concurrently train masked multi-view observations through a range of diverse proxy tasks. These tasks span image reconstruction, rotation, contrastive learning, and a novel task that employs a mutual learning paradigm. This new task capitalizes on the consistency between predictions from various perspectives, enabling the extraction of hidden multi-view information from 3D medical data. In the fine-tuning stage, a cross-view decoder is developed to aggregate the multi-view information through a cross-attention block. Compared with the previous state-of-the-art self-supervised learning method Swin UNETR, SwinMM demonstrates a notable advantage on several medical image segmentation tasks. It allows for a smooth integration of multi-view information, significantly boosting both the accuracy and data-efficiency of the model. Code and models are available at https://github.com/UCSC-VLAA/SwinMM/.

cs.CV↗

arXiv2023

Lithium tantalate electro-optical photonic integrated circuits for high volume manufacturing

Photonic integrated circuits based on Lithium Niobate have demonstrated the vast capabilities afforded by material with a high Pockels coefficient, allowing linear and high-speed modulators operating at CMOS voltage levels for applications ranging from data-center communications and photonic accelerators for AI. However despite major progress, the industrial adoption of this technology is compounded by the high cost per wafer. Here we overcome this challenge and demonstrate a photonic platform that satisfies the dichotomy of allowing scalable manufacturing at low cost, while at the same time exhibiting equal, and superior properties to those of Lithium Niobate. We demonstrate that it is possible to manufacture low loss photonic integrated circuits using Lithium Tantalate, a material that is already commercially adopted for acoustic filters in 5G and 6G. We show that LiTaO3 posses equally attractive optical properties and can be etched with high precision and negligible residues using DUV lithography, diamond like carbon (DLC) as a hard mask and alkaline wet etching. Using this approach we demonstrate microresonators with an intrinsic cavity linewidth of 26.8 MHz, corresponding to a linear loss of 5.6 dB/m and demonstrate a Mach Zehnder modulator with Vpi L = 4.2 V cm half-wave voltage length product. In comparison to Lithium Niobate, the photonic integrated circuits based on LiTaO3 exhibit a much lower birefringence, allowing high-density circuits and broadband operation over all telecommunication bands (O to L band), exhibit higher photorefractive damage threshold, and lower microwave loss tangent. Moreover, we show that the platform supports generation of soliton microcombs in X-Cut LiTaO3 racetrack microresonator with electronically detectable repetition rate, i.e. 30.1 GHz.

physics.optics↗

arXiv2023

LViT: Language meets Vision Transformer in Medical Image Segmentation

Deep learning has been widely used in medical image segmentation and other aspects. However, the performance of existing medical image segmentation models has been limited by the challenge of obtaining sufficient high-quality labeled data due to the prohibitive data annotation cost. To alleviate this limitation, we propose a new text-augmented medical image segmentation model LViT (Language meets Vision Transformer). In our LViT model, medical text annotation is incorporated to compensate for the quality deficiency in image data. In addition, the text information can guide to generate pseudo labels of improved quality in the semi-supervised learning. We also propose an Exponential Pseudo label Iteration mechanism (EPI) to help the Pixel-Level Attention Module (PLAM) preserve local image features in semi-supervised LViT setting. In our model, LV (Language-Vision) loss is designed to supervise the training of unlabeled images using text information directly. For evaluation, we construct three multimodal medical segmentation datasets (image + text) containing X-rays and CT images. Experimental results show that our proposed LViT has superior segmentation performance in both fully-supervised and semi-supervised setting. The code and datasets are available at https://github.com/HUANGLIZI/LViT.

cs.CV↗

arXiv2023

ChatDoctor: A Medical Chat Model Fine-Tuned on a Large Language Model Meta-AI (LLaMA) Using Medical Domain Knowledge

The primary aim of this research was to address the limitations observed in the medical knowledge of prevalent large language models (LLMs) such as ChatGPT, by creating a specialized language model with enhanced accuracy in medical advice. We achieved this by adapting and refining the large language model meta-AI (LLaMA) using a large dataset of 100,000 patient-doctor dialogues sourced from a widely used online medical consultation platform. These conversations were cleaned and anonymized to respect privacy concerns. In addition to the model refinement, we incorporated a self-directed information retrieval mechanism, allowing the model to access and utilize real-time information from online sources like Wikipedia and data from curated offline medical databases. The fine-tuning of the model with real-world patient-doctor interactions significantly improved the model's ability to understand patient needs and provide informed advice. By equipping the model with self-directed information retrieval from reliable online and offline sources, we observed substantial improvements in the accuracy of its responses. Our proposed ChatDoctor, represents a significant advancement in medical LLMs, demonstrating a significant improvement in understanding patient inquiries and providing accurate advice. Given the high stakes and low error tolerance in the medical field, such enhancements in providing accurate and reliable information are not only beneficial but essential.

cs.CL↗

arXiv2023

Multi-view MERA Subspace Clustering

Tensor-based multi-view subspace clustering (MSC) can capture high-order correlation in the self-representation tensor. Current tensor decompositions for MSC suffer from highly unbalanced unfolding matrices or rotation sensitivity, failing to fully explore inter/intra-view information. Using the advanced tensor network, namely, multi-scale entanglement renormalization ansatz (MERA), we propose a low-rank MERA based MSC (MERA-MSC) algorithm, where MERA factorizes a tensor into contractions of one top core factor and the rest orthogonal/semi-orthogonal factors. Benefiting from multiple interactions among orthogonal/semi-orthogonal (low-rank) factors, the low-rank MERA has a strong representation power to capture the complex inter/intra-view information in the self-representation tensor. The alternating direction method of multipliers is adopted to solve the optimization model. Experimental results on five multi-view datasets demonstrate MERA-MSC has superiority against the compared algorithms on six evaluation metrics. Furthermore, we extend MERA-MSC by incorporating anchor learning to develop a scalable low-rank MERA based multi-view clustering method (sMREA-MVC). The effectiveness and efficiency of sMERA-MVC have been validated on three large-scale multi-view datasets. To our knowledge, this is the first work to introduce MERA to the multi-view clustering topic. The codes of MERA-MSC and sMERA-MVC are publicly available at https://github.com/longzhen520/MERA-MSC.

cs.CV↗

arXiv2023

DiscoPrompt: Path Prediction Prompt Tuning for Implicit Discourse Relation Recognition

Implicit Discourse Relation Recognition (IDRR) is a sophisticated and challenging task to recognize the discourse relations between the arguments with the absence of discourse connectives. The sense labels for each discourse relation follow a hierarchical classification scheme in the annotation process (Prasad et al., 2008), forming a hierarchy structure. Most existing works do not well incorporate the hierarchy structure but focus on the syntax features and the prior knowledge of connectives in the manner of pure text classification. We argue that it is more effective to predict the paths inside the hierarchical tree (e.g., "Comparison -> Contrast -> however") rather than flat labels (e.g., Contrast) or connectives (e.g., however). We propose a prompt-based path prediction method to utilize the interactive information and intrinsic senses among the hierarchy in IDRR. This is the first work that injects such structure information into pre-trained language models via prompt tuning, and the performance of our solution shows significant and consistent improvement against competitive baselines.

cs.CL↗

arXiv2023

Synchrotron Radiation Dominates the Extremely Bright GRB 221009A

The brightest Gamma-ray burst, GRB 221009A, has spurred numerous theoretical investigations, with particular attention paid to the origins of ultra-high energy TeV photons during the prompt phase. However, analyzing the mechanism of radiation of photons in the $\sim$MeV range has been difficult because the high flux causes pile-up and saturation effects in most GRB detectors. In this letter, we present systematic modeling of the time-resolved spectra of the GRB using unsaturated data obtained from Fermi/GBM (precursor) and SATech-01/GECAM-C (main emission and flare). Our approach incorporates the synchrotron radiation model, which assumes an expanding emission region with relativistic speed and a global magnetic field that decays with radius, and successfully fits such a model to the observational data. Our results indicate that the spectra of the burst are fully in accordance with a synchrotron origin from relativistic electrons accelerated at a large emission radius. The lack of thermal emission in the prompt emission spectra supports a Poynting-flux-dominated jet composition.

astro-ph.HE↗

arXiv2023

Coarse-to-Fine Covid-19 Segmentation via Vision-Language Alignment

Segmentation of COVID-19 lesions can assist physicians in better diagnosis and treatment of COVID-19. However, there are few relevant studies due to the lack of detailed information and high-quality annotation in the COVID-19 dataset. To solve the above problem, we propose C2FVL, a Coarse-to-Fine segmentation framework via Vision-Language alignment to merge text information containing the number of lesions and specific locations of image information. The introduction of text information allows the network to achieve better prediction results on challenging datasets. We conduct extensive experiments on two COVID-19 datasets including chest X-ray and CT, and the results demonstrate that our proposed method outperforms other state-of-the-art segmentation methods.

eess.IV↗

arXiv2022

Robust nonparametric integrative analysis to decipher heterogeneity and commonality across subgroups using sparse boosting

In many biomedical problems, data are often heterogeneous, with samples spanning multiple patient subgroups, where different subgroups may have different disease subtypes, stages, or other medical contexts. These subgroups may be related, but they are also expected to have differences with respect to the underlying biology. The heterogeneous data presents a precious opportunity to explore the heterogeneities and commonalities between related subgroups. Unfortunately, effective statistical analysis methods are still lacking. Recently, several novel methods based on integrative analysis have been proposed to tackle this challenging problem. Despite promising results, the existing studies are still limited by ignoring data contamination and making strict assumptions of linear effects of covariates on response. As such, we develop a robust nonparametric integrative analysis approach to identify heterogeneity and commonality, as well as select important covariates and estimate covariate effects. Possible data contamination is accommodated by adopting the Cauchy loss function, and a nonparametric model is built to accommodate nonlinear effects. The proposed approach is based on a sparse boosting technique. The advantages of the proposed approach are demonstrated in extensive simulations. The analysis of The Cancer Genome Atlas data on glioblastoma multiforme and lung adenocarcinoma shows that the proposed approach makes biologically meaningful findings with satisfactory prediction.

stat.ME↗

arXiv2022

SRNR: Training neural networks for Super-Resolution MRI using Noisy high-resolution Reference data

Neural network (NN) based approaches for super-resolution MRI typically require high-SNR high-resolution reference data acquired in many subjects, which is time consuming and a barrier to feasible and accessible implementation. We propose to train NNs for Super-Resolution using Noisy Reference data (SRNR), leveraging the mechanism of the classic NN-based denoising method Noise2Noise. We systematically demonstrate that results from NNs trained using noisy and high-SNR references are similar for both simulated and empirical data. SRNR suggests a smaller number of repetitions of high-resolution reference data can be used to simplify the training data preparation for super-resolution MRI.

eess.IV↗

arXiv2022

Semi-WTC: A Practical Semi-supervised Framework for Attack Categorization through Weight-Task Consistency

Supervised learning has been widely used for attack categorization, requiring high-quality data and labels. However, the data is often imbalanced and it is difficult to obtain sufficient annotations. Moreover, supervised models are subject to real-world deployment issues, such as defending against unseen artificial attacks. To tackle the challenges, we propose a semi-supervised fine-grained attack categorization framework consisting of an encoder and a two-branch structure and this framework can be generalized to different supervised models. The multilayer perceptron with residual connection is used as the encoder to extract features and reduce the complexity. The Recurrent Prototype Module (RPM) is proposed to train the encoder effectively in a semi-supervised manner. To alleviate the data imbalance problem, we introduce the Weight-Task Consistency (WTC) into the iterative process of RPM by assigning larger weights to classes with fewer samples in the loss function. In addition, to cope with new attacks in real-world deployment, we propose an Active Adaption Resampling (AAR) method, which can better discover the distribution of unseen sample data and adapt the parameters of encoder. Experimental results show that our model outperforms the state-of-the-art semi-supervised attack detection methods with a 3% improvement in classification accuracy and a 90% reduction in training time.

cs.CR↗

arXiv2022

Tightly confining lithium niobate photonic integrated circuits and lasers

Photonic integrated circuits are indispensible for data transmission within modern datacenters and pervade into multiple application spheres traditionally limited for bulk optics, such as LiDAR and biosensing. Of particular interest are ferroelectrics such as Lithium Niobate, which exhibit a large electro-optical Pockels effect enabling ultrafast and efficient modulation, but are difficult to process via dry etching . For this reason, etching tightly confining waveguides - routinely achieved in silicon or silicon nitride - has not been possible. Diamond-like carbon (DLC) was discovered in the 1950s and is a material that exhibits an amorphous phase, excellent hardness, and the ability to be deposited in nano-metric thin films. It has excellent thermal, mechanical, and electrical properties, making it an ideal protective coating. Here we demonstrate that DLC is also a superior material for the manufacturing of next-generation photonic integrated circuits based on ferroelectrics, specifically Lithium Niobate on insulator (LNOI). Using DLC as a hard mask, we demonstrate the fabrication of deeply etched, tightly confining, low loss photonic integrated circuits with losses as low as 5.6 dB/m. In contrast to widely employed ridge waveguides, this approach benefits from a more than 1 order of magnitude higher area integration density while maintaining efficient electro-optical modulation, low loss, and offering a route for efficient optical fiber interfaces. As a proof of concept, we demonstrate a frequency agile hybrid integrated III-V Lithium Niobate based laser with kHz linewidth and tuning rate of 0.7 Peta-Hertz per second with excellent linearity and CMOS-compatible driving voltage. Our approach can herald a new generation of tightly confining ferroelectric photonic integrated circuits.

physics.optics↗

arXiv2022

TFCNs: A CNN-Transformer Hybrid Network for Medical Image Segmentation

Medical image segmentation is one of the most fundamental tasks concerning medical information analysis. Various solutions have been proposed so far, including many deep learning-based techniques, such as U-Net, FC-DenseNet, etc. However, high-precision medical image segmentation remains a highly challenging task due to the existence of inherent magnification and distortion in medical images as well as the presence of lesions with similar density to normal tissues. In this paper, we propose TFCNs (Transformers for Fully Convolutional denseNets) to tackle the problem by introducing ResLinear-Transformer (RL-Transformer) and Convolutional Linear Attention Block (CLAB) to FC-DenseNet. TFCNs is not only able to utilize more latent information from the CT images for feature extraction, but also can capture and disseminate semantic features and filter non-semantic features more effectively through the CLAB module. Our experimental results show that TFCNs can achieve state-of-the-art performance with dice scores of 83.72\% on the Synapse dataset. In addition, we evaluate the robustness of TFCNs for lesion area effects on the COVID-19 public datasets. The Python code will be made publicly available on https://github.com/HUANGLIZI/TFCNs.

eess.IV↗

arXiv2022

Reduced Material Loss in Thin-film Lithium Niobate Waveguides

Thin-film lithium niobate has shown promise for scalable applications ranging from single-photon sources to high-bandwidth data communication systems. Realization of the next generation high-performance classical and quantum devices, however, requires much lower optical losses than the current state of the art ($\sim$10 million). Unfortunately, material limitations of ion-sliced thin-film lithium niobate have not been explored, and therefore it is unclear how high-quality factor can be achieved in this platform. Here we evaluate the material limited quality factor of thin-film lithium niobate photonic platform can be as high as $Q\approx 1.8\times10^{8}$ at telecommunication wavelengths, corresponding to a propagation loss of 0.2 dB/m.

physics.optics↗

arXiv2022

A Robust Phased Elimination Algorithm for Corruption-Tolerant Gaussian Process Bandits

We consider the sequential optimization of an unknown, continuous, and expensive to evaluate reward function, from noisy and adversarially corrupted observed rewards. When the corruption attacks are subject to a suitable budget $C$ and the function lives in a Reproducing Kernel Hilbert Space (RKHS), the problem can be posed as corrupted Gaussian process (GP) bandit optimization. We propose a novel robust elimination-type algorithm that runs in epochs, combines exploration with infrequent switching to select a small subset of actions, and plays each action for multiple time instants. Our algorithm, Robust GP Phased Elimination (RGP-PE), successfully balances robustness to corruptions with exploration and exploitation such that its performance degrades minimally in the presence (or absence) of adversarial corruptions. When $T$ is the number of samples and $γ_T$ is the maximal information gain, the corruption-dependent term in our regret bound is $O(C γ_T^{3/2})$, which is significantly tighter than the existing $O(C \sqrt{T γ_T})$ for several commonly-considered kernels. We perform the first empirical study of robustness in the corrupted GP bandit setting, and show that our algorithm is robust against a variety of adversarial attacks.

stat.ML↗

arXiv2022

Gaussian Process Bandit Optimization with Few Batches

In this paper, we consider the problem of black-box optimization using Gaussian Process (GP) bandit optimization with a small number of batches. Assuming the unknown function has a low norm in the Reproducing Kernel Hilbert Space (RKHS), we introduce a batch algorithm inspired by batched finite-arm bandit algorithms, and show that it achieves the cumulative regret upper bound $O^\ast(\sqrt{Tγ_T})$ using $O(\log\log T)$ batches within time horizon $T$, where the $O^\ast(\cdot)$ notation hides dimension-independent logarithmic factors and $γ_T$ is the maximum information gain associated with the kernel. This bound is near-optimal for several kernels of interest and improves on the typical $O^\ast(\sqrt{T}γ_T)$ bound, and our approach is arguably the simplest among algorithms attaining this improvement. In addition, in the case of a constant number of batches (not depending on $T$), we propose a modified version of our algorithm, and characterize how the regret is impacted by the number of batches, focusing on the squared exponential and Matérn kernels. The algorithmic upper bounds are shown to be nearly minimax optimal via analogous algorithm-independent lower bounds.

stat.ML↗