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arXiv · 2302.01790

Understanding metric-related pitfalls in image analysis validation

Annika Reinke·Minu D. Tizabi·Michael Baumgartner·Matthias Eisenmann·Doreen Heckmann-Nötzel·A. Emre Kavur·Tim Rädsch·Carole H. Sudre·Laura Acion·Michela Antonelli·Tal Arbel·Spyridon Bakas·Arriel Benis·Matthew Blaschko·Florian Buettner·M. Jorge Cardoso·Veronika Cheplygina·Jianxu Chen·Evangelia Christodoulou·Beth A. Cimini·Gary S. Collins·Keyvan Farahani·Luciana Ferrer·Adrian Galdran·Bram van Ginneken·Ben Glocker·Patrick Godau·Robert Haase·Daniel A. Hashimoto·Michael M. Hoffman·Merel Huisman·Fabian Isensee·Pierre Jannin·Charles E. Kahn·Dagmar Kainmueller·Bernhard Kainz·Alexandros Karargyris·Alan Karthikesalingam·Hannes Kenngott·Jens Kleesiek·Florian Kofler·Thijs Kooi·Annette Kopp-Schneider·Michal Kozubek·Anna Kreshuk·Tahsin Kurc·Bennett A. Landman·Geert Litjens·Amin Madani·Klaus Maier-Hein·Anne L. Martel·Peter Mattson·Erik Meijering·Bjoern Menze·Karel G. M. Moons·Henning Müller·Brennan Nichyporuk·Felix Nickel·Jens Petersen·Susanne M. Rafelski·Nasir Rajpoot·Mauricio Reyes·Michael A. Riegler·Nicola Rieke·Julio Saez-Rodriguez·Clara I. Sánchez·Shravya Shetty·Maarten van Smeden·Ronald M. Summers·Abdel A. Taha·Aleksei Tiulpin·Sotirios A. Tsaftaris·Ben Van Calster·Gaël Varoquaux·Manuel Wiesenfarth·Ziv R. Yaniv·Paul F. Jäger·Lena Maier-Hein
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Abstract

Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately in relation to the underlying research problem. This could be attributed to a lack of accessibility of metric-related knowledge: While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. Focusing on biomedical image analysis but with the potential of transfer to other fields, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. To facilitate comprehension, illustrations and specific examples accompany each pitfall. As a structured body of information accessible to researchers of all levels of expertise, this work enhances global comprehension of a key topic in image analysis validation.

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Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein. 2023-02-03. Understanding metric-related pitfalls in image analysis validation. https://doi.org/10.1038/s41592-023-02150-0

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